View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20717_low_11 (Length: 359)
Name: NF20717_low_11
Description: NF20717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20717_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 52182400 - 52182175
Alignment:
| Q |
19 |
gaaaatatacaagatagaaatataattgagaaagattagtggtagtagagcacgtaattaaaggcactagtgcactaagcattgagggggcgtttaattt |
118 |
Q |
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| T |
52182400 |
gaaaatatacaagatagaaatataattgagaaagattagtggtagtagagcacgtaattaaaggcactagtgcactaagcattgagggggcgtttaattt |
52182301 |
T |
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| Q |
119 |
ttcaggaactttacttgaaccacgttcttgcaattttaacccgtgatat----attccatcttttgcatgctcattcttgcattcatcttgctccatcaa |
214 |
Q |
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| T |
52182300 |
ttcaggaactttacttgacccacgttcttgcaattttaacccgtgatatattaattccatcctttgcatgctcattcttgcattcatcttgctccatcaa |
52182201 |
T |
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| Q |
215 |
ctctgatgaaaattctccaaggtttg |
240 |
Q |
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| T |
52182200 |
ctctgatgaaaattctccaaggtttg |
52182175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 343
Target Start/End: Complemental strand, 52182102 - 52182073
Alignment:
| Q |
314 |
gaagattttggttctaattcaagatcttat |
343 |
Q |
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| T |
52182102 |
gaagattttggttctaattcaagatcttat |
52182073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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