View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20717_low_16 (Length: 293)
Name: NF20717_low_16
Description: NF20717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20717_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 42577352 - 42577095
Alignment:
| Q |
19 |
ctgatcagaaattcaatttcaataaatttaaataacagtattattattattgcgaaaccacattaaggataataaatttaactaacttggagatatgatc |
118 |
Q |
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| T |
42577352 |
ctgatcagaaattcaatttcaataaatttaaataacagtattattattattgcgaaaccacattaaggataataaatttaactaacttggagatatgatc |
42577253 |
T |
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| Q |
119 |
atagtaacggcgacgaaagtgaacataacgaacggaggagaatcgatatgaggtgtggttagtagttgaagttaacgcagacgctaaggagtggctgaaa |
218 |
Q |
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| T |
42577252 |
atagtaacggcgacgaaagtgaacataacgaacggaggagaatcgatatgaggtgtggttagtagttgaagttaacgcagacgctaaggagtggctgaaa |
42577153 |
T |
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| Q |
219 |
cagagcaatgtaattatagcag-ctaataactgttaaataatggtttaatggaagaga |
275 |
Q |
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| T |
42577152 |
cagagcaatgtaattatagcagaataataactgttaaataatggtttaatggaagaga |
42577095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 42593996 - 42593952
Alignment:
| Q |
60 |
tattattattgcgaaaccacattaaggataataaatttaactaac |
104 |
Q |
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| T |
42593996 |
tattattattgcaaaacctctttaaggagaataaatttaactaac |
42593952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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