View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20717_low_17 (Length: 283)
Name: NF20717_low_17
Description: NF20717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20717_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 30 - 235
Target Start/End: Complemental strand, 18171896 - 18171691
Alignment:
| Q |
30 |
gataattctagtgctttactctgcatggatatgcccctttcaatttgcttttctgcctcaaaaacatgacacactattcatcatagataacattgtgaat |
129 |
Q |
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| T |
18171896 |
gataattctagtgctttactctgcatggatatgcccctttcaatttgcttttctgcctcaaaaacatgacacactattcatcatagataacattgtgaat |
18171797 |
T |
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| Q |
130 |
ggtttctttgcaattgacatagtgatgacattctttgttgcatatcttgataaccattcttaccttcttattgatgatcataagaaaattgcaaaaaggt |
229 |
Q |
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| T |
18171796 |
ggtttctttgcaattgacatagtgatgacattctttgttgcatatcttgataaccattcttaccttcttattgatgatcataagaaaattgcaaaaaggt |
18171697 |
T |
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| Q |
230 |
acatat |
235 |
Q |
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|||||| |
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| T |
18171696 |
acatat |
18171691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 6388275 - 6388154
Alignment:
| Q |
102 |
actattcatcatagataacattgtgaatggtttctttgcaattgacatagtgatgacattctttgttgcatatcttgataaccattcttaccttcttatt |
201 |
Q |
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| T |
6388275 |
actattcatcatagacaacattgtcaatggcttcttcgccatcgacatcgtgcttacattcttcgttgcataccacgatagtcattcttctcttctcatt |
6388176 |
T |
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| Q |
202 |
gatgatcataagaaaattgcaa |
223 |
Q |
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| T |
6388175 |
gatgatccaaagaaaattgcaa |
6388154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 42966371 - 42966407
Alignment:
| Q |
200 |
ttgatgatcataagaaaattgcaaaaaggtacatatt |
236 |
Q |
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|||||||| |||||||||||||||||||||||||||| |
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| T |
42966371 |
ttgatgatgataagaaaattgcaaaaaggtacatatt |
42966407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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