View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20717_low_18 (Length: 271)

Name: NF20717_low_18
Description: NF20717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20717_low_18
NF20717_low_18
[»] chr3 (11 HSPs)
chr3 (41-248)||(2442146-2442353)
chr3 (96-134)||(763341-763379)
chr3 (82-127)||(1889363-1889409)
chr3 (91-128)||(1930950-1930987)
chr3 (91-127)||(1897452-1897488)
chr3 (91-127)||(1906898-1906934)
chr3 (91-127)||(2932152-2932188)
chr3 (82-127)||(1890829-1890875)
chr3 (84-128)||(12218278-12218323)
chr3 (55-126)||(956622-956691)
chr3 (91-127)||(1936761-1936797)
[»] chr4 (2 HSPs)
chr4 (83-127)||(22671911-22671956)
chr4 (92-128)||(20019551-20019587)
[»] chr5 (2 HSPs)
chr5 (213-248)||(11081920-11081955)
chr5 (82-125)||(1427464-1427508)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 41 - 248
Target Start/End: Complemental strand, 2442353 - 2442146
Alignment:
Q  41 gaagtcatcagttaaatctcatgctcgagtggcatattgctacatctacatctagcattaagaacaaggtgatattaaactctcaacagagactcctaag 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2442353 gaagtcatcagttaaatctcatgctcgagtggcatattgctacatctacatctagcattaagaacaaggtgatattaaactctcaacagagactcctaag 2442254  T
Q  141 atgttttgaaaatcactagacttgaaagtaccactcctggaatcgtaaacaaacgaattaaacgcccctgtcaacttcaacaacacttgatcatcctcaa 240  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2442253 atgttttgaaaatcactagactttaaagtaccactcctggaatcgtaaacaaacgaattaaacgcccctgtcaacttcaacaacacttgatcatcctcaa 2442154  T
Q  241 ataaatat 248  Q
    ||||||||    
T  2442153 ataaatat 2442146  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 763341 - 763379
Alignment:
Q  96 cattaagaacaaggtgatattaaactctcaacagagact 134  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  763341 cattaagaacaaggtgatattaaactctcaacatagact 763379  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 1889363 - 1889409
Alignment:
Q  82 acatctacat-ctagcattaagaacaaggtgatattaaactctcaac 127  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||    
T  1889363 acatctacattctagcattaagaacaaggtgatatcaaactctcaac 1889409  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 1930950 - 1930987
Alignment:
Q  91 tctagcattaagaacaaggtgatattaaactctcaaca 128  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  1930950 tctagcattaagaacaaggtgatatcaaactctcaaca 1930987  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 1897452 - 1897488
Alignment:
Q  91 tctagcattaagaacaaggtgatattaaactctcaac 127  Q
    ||||||||||||||||||||||||| |||||||||||    
T  1897452 tctagcattaagaacaaggtgatatcaaactctcaac 1897488  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 1906898 - 1906934
Alignment:
Q  91 tctagcattaagaacaaggtgatattaaactctcaac 127  Q
    ||||||||||||||||||||||||| |||||||||||    
T  1906898 tctagcattaagaacaaggtgatatcaaactctcaac 1906934  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 2932188 - 2932152
Alignment:
Q  91 tctagcattaagaacaaggtgatattaaactctcaac 127  Q
    ||||||||||||||||||||||||| |||||||||||    
T  2932188 tctagcattaagaacaaggtgatatcaaactctcaac 2932152  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 1890829 - 1890875
Alignment:
Q  82 acatctacat-ctagcattaagaacaaggtgatattaaactctcaac 127  Q
    |||||||||| |||||||||||||||||| ||||| |||||||||||    
T  1890829 acatctacattctagcattaagaacaaggcgatatcaaactctcaac 1890875  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 12218323 - 12218278
Alignment:
Q  84 atctacatc-tagcattaagaacaaggtgatattaaactctcaaca 128  Q
    ||||||||| || |||||||||||||||||||| ||||||||||||    
T  12218323 atctacatcctaacattaagaacaaggtgatatcaaactctcaaca 12218278  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 956691 - 956622
Alignment:
Q  55 aatctcatgctcgagtggcatattgctacatctacatctagcattaagaacaaggtgatattaaactctcaa 126  Q
    |||||||||||| || |||||||  | |||| |||||  |||||||||||||||||||||| ||||| ||||    
T  956691 aatctcatgctcaagaggcatatcaccacatttacat--agcattaagaacaaggtgatatcaaactttcaa 956622  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 1936761 - 1936797
Alignment:
Q  91 tctagcattaagaacaaggtgatattaaactctcaac 127  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  1936761 tctagcattaaaaacaaggtgatatcaaactctcaac 1936797  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 22671911 - 22671956
Alignment:
Q  83 catctacat-ctagcattaagaacaaggtgatattaaactctcaac 127  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  22671911 catctacatactagcactaagaacaaggtgatattaaactctcaac 22671956  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 20019551 - 20019587
Alignment:
Q  92 ctagcattaagaacaaggtgatattaaactctcaaca 128  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  20019551 ctagcattaaaaacaaggtgatatcaaactctcaaca 20019587  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 248
Target Start/End: Complemental strand, 11081955 - 11081920
Alignment:
Q  213 aacttcaacaacacttgatcatcctcaaataaatat 248  Q
    ||||||||||||||||||||||||||||||| ||||    
T  11081955 aacttcaacaacacttgatcatcctcaaatatatat 11081920  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 1427464 - 1427508
Alignment:
Q  82 acatctacatct-agcattaagaacaaggtgatattaaactctca 125  Q
    |||||||||||| | || |||||||||||||||||||||||||||    
T  1427464 acatctacatcttaacaataagaacaaggtgatattaaactctca 1427508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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