View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20717_low_19 (Length: 270)

Name: NF20717_low_19
Description: NF20717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20717_low_19
NF20717_low_19
[»] chr3 (2 HSPs)
chr3 (1-256)||(54454887-54455142)
chr3 (1-160)||(27991253-27991411)
[»] chr2 (2 HSPs)
chr2 (14-206)||(15343311-15343502)
chr2 (9-222)||(32466812-32467024)
[»] chr4 (4 HSPs)
chr4 (1-132)||(33318974-33319104)
chr4 (126-192)||(39812390-39812456)
chr4 (135-192)||(7033354-7033411)
chr4 (63-193)||(42458778-42458907)
[»] chr5 (1 HSPs)
chr5 (95-193)||(43452828-43452926)
[»] chr7 (2 HSPs)
chr7 (14-191)||(13881245-13881421)
chr7 (5-189)||(28769246-28769429)
[»] chr8 (3 HSPs)
chr8 (30-192)||(1347471-1347632)
chr8 (138-209)||(34661971-34662042)
chr8 (28-192)||(8269443-8269606)
[»] chr1 (1 HSPs)
chr1 (14-189)||(17999166-17999340)
[»] chr6 (1 HSPs)
chr6 (95-209)||(25062136-25062250)
[»] scaffold0766 (1 HSPs)
scaffold0766 (126-170)||(3963-4007)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 54454887 - 54455142
Alignment:
Q  1 atgcttggtattgtaatgggaggcattgttaagttccatgtacaagtgtgcaagttcatcagctccccatgcataaccagccacaagctcccaagtctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  54454887 atgcttggtattgtaatgggaggcattgttaagttccatgtacaagtgtgcaagttcatcagctccccatgcataaccagccacaagctcccaggtctct 54454986  T
Q  101 aaagtacttcagataagcaacattcacatagtatgcactcttgtcagtgaagagtgtgatatccaccaagaagagtaaatatatgcggagagcctactcc 200  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||    
T  54454987 aaagtacttcagataagcaacatccacatagtaggcactcttgtcagtgaagagtgtgatacccaccaagaagaataaatatatgcggagagcctgctcc 54455086  T
Q  201 cgcaacctccgtgccagaaccacatcaccctcattgtctgcctctaattgctctaa 256  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  54455087 cgcaacctccgcgccagaaccacatcaccctcattgtccgcctctaattgctctaa 54455142  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 27991253 - 27991411
Alignment:
Q  1 atgcttggtattgtaatgggaggcattgttaagttccatgtacaagtgtgcaagttcatcagctccccatgcataaccagccacaagctcccaagtctct 100  Q
    ||||||||  ||||||||||| ||||||||||| ||  | ||||||| || |||| || || ||||||||| ||||||| | ||||||| |||  |||||    
T  27991253 atgcttggcgttgtaatgggaagcattgttaagctctctatacaagtttgaaagtgcagcaactccccatgaataaccaacaacaagct-ccagatctct 27991351  T
Q  101 aaagtacttcagataagcaacattcacatagtatgcactcttgtcagtgaagagtgtgat 160  Q
    ||||||| | ||||| ||||||| ||||||  | || ||||||||||||||||| |||||    
T  27991352 aaagtacctgagatatgcaacatccacataagaggcgctcttgtcagtgaagagcgtgat 27991411  T

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Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 15343502 - 15343311
Alignment:
Q  14 taatgggaggcattgttaagttccatgtacaagtgtgcaagttcatcagctccccatgcataaccagccacaagctcccaagtctctaaagtacttcaga 113  Q
    |||||||||||||||||||  ||||||||||  |||| || |  | |||||||| || |||||||||| ||||||||| |||||||| |||||||||| |    
T  15343502 taatgggaggcattgttaatctccatgtacatatgtgaaactgaagcagctcccgattcataaccagcgacaagctcc-aagtctctgaagtacttcaaa 15343404  T
Q  114 taagcaacattcacatagtatgcactcttgtcagtgaagagtgtgatatccaccaagaagagtaaatatatgcggagagcctactcccgcaac 206  Q
    |||||||||| ||||||||| || ||||||| ||||||||| |||||| |||||||| |||| ||||||||  |||| |||| ||||||||||    
T  15343403 taagcaacatccacatagtaggcgctcttgttagtgaagagcgtgatacccaccaagtagagcaaatatatatggagggcctgctcccgcaac 15343311  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 32466812 - 32467024
Alignment:
Q  9 tattgtaatgggaggcattgttaagttccatgtacaagtgtgcaagttcatcagctccccatgcataaccagccacaagctcccaagtctctaaagtact 108  Q
    ||||||| |||||||| |||||||| ||| |||||||||||| ||||  | ||||||||| || || || |||||||  |||| | || ||| ||||||     
T  32466812 tattgtagtgggaggcgttgttaagctccttgtacaagtgtgaaagtgtagcagctccccgtgaattactagccacatcctcc-aggtttctgaagtacc 32466910  T
Q  109 tcagataagcaacattcacatagtatgcactcttgtcagtgaagagtgtgatatccaccaagaagagtaaatatatgcggagagcctactcccgcaacct 208  Q
    ||||||||||||||| ||||| ||| ||  |||| ||||||||||| |||||| | || ||| | ||||||||||||||| |||||| ||| |||||| |    
T  32466911 tcagataagcaacatgcacatggtaggcgttcttatcagtgaagagcgtgatacctactaagtatagtaaatatatgcggggagcctgctcacgcaactt 32467010  T
Q  209 ccgtgccagaacca 222  Q
    ||  ||||||||||    
T  32467011 ccacgccagaacca 32467024  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 33318974 - 33319104
Alignment:
Q  1 atgcttggtattgtaatgggaggcattgttaagttccatgtacaagtgtgcaagttcatcagctccccatgcataaccagccacaagctcccaagtctct 100  Q
    ||||||||| ||||||||  || |||||||||| |||||||||| |||||||||  || || |||||||||||||| |||  ||||||| |||||| | |    
T  33318974 atgcttggtcttgtaatgaaagacattgttaagctccatgtacaggtgtgcaagggcagcaactccccatgcataatcagagacaagct-ccaagttttt 33319072  T
Q  101 aaagtacttcagataagcaacattcacatagt 132  Q
     |||||| ||| ||||||||||| ||||||||    
T  33319073 gaagtacctcaaataagcaacatccacatagt 33319104  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 39812390 - 39812456
Alignment:
Q  126 acatagtatgcactcttgtcagtgaagagtgtgatatccaccaagaagagtaaatatatgcggagag 192  Q
    ||||||| ||| | ||||||| |||||||||||||| |||||||| |||||||||| |||| |||||    
T  39812390 acatagtttgcgcacttgtcaatgaagagtgtgatacccaccaagtagagtaaatagatgcagagag 39812456  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 7033411 - 7033354
Alignment:
Q  135 gcactcttgtcagtgaagagtgtgatatccaccaagaagagtaaatatatgcggagag 192  Q
    |||||||||| |||||| ||||||||| | |||||| |||| ||||||||||||||||    
T  7033411 gcactcttgttagtgaatagtgtgatacctaccaagtagagcaaatatatgcggagag 7033354  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 193
Target Start/End: Original strand, 42458778 - 42458907
Alignment:
Q  63 ctccccatgcataaccagccacaagctcccaagtctctaaagtacttcagataagcaacattcacatagtatgcactcttgtcagtgaagagtgtgatat 162  Q
    ||||||||| ||||||||| |||| |||| | |||||| |||||| |||||||  ||| || |||||||   ||| |||||||| ||||||  |||||      
T  42458778 ctccccatgaataaccagcaacaacctcc-aggtctctgaagtacctcagatagacaatatccacataggtagcattcttgtcaatgaagatagtgatcc 42458876  T
Q  163 ccaccaagaagagtaaatatatgcggagagc 193  Q
    |||||||| | |  |||||||||||||||||    
T  42458877 ccaccaagtacaacaaatatatgcggagagc 42458907  T

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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 95 - 193
Target Start/End: Original strand, 43452828 - 43452926
Alignment:
Q  95 gtctctaaagtacttcagataagcaacattcacatagtatgcactcttgtcagtgaagagtgtgatatccaccaagaagagtaaatatatgcggagagc 193  Q
    ||||||||||||| |||||||  ||||||||||||||    |||||||||||||||||||||||||  |||||||| | |  |||||||||||||||||    
T  43452828 gtctctaaagtacctcagatagacaacattcacataggtgacactcttgtcagtgaagagtgtgatccccaccaagtacatcaaatatatgcggagagc 43452926  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 13881421 - 13881245
Alignment:
Q  14 taatgggaggcattgttaagttccatgtacaagtgtgcaagttcatcagctccccatgcataaccagccacaagctcccaagtctctaaagtacttcaga 113  Q
    |||| ||||||||||||||| | | ||||||||||||| ||  || | ||||||||||||||| |||  ||||| ||| | ||||||||||||| ||| |    
T  13881421 taataggaggcattgttaagctacttgtacaagtgtgctagggcaactgctccccatgcataatcagatacaagatcc-aggtctctaaagtacctcaaa 13881323  T
Q  114 taagcaacattcacatagtatgcactcttgtcagtgaagagtgtgatatccaccaagaagagtaaatatatgcggaga 191  Q
     |    |||| || ||||| ||| |||||||| ||||| |||||||||||||||||| |||| ||||| |||| ||||    
T  13881322 catatcacatccatatagtttgcgctcttgtcggtgaatagtgtgatatccaccaagtagagcaaatagatgcagaga 13881245  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 28769429 - 28769246
Alignment:
Q  5 ttggtattgtaatgggaggcattgttaagttccatgtacaagtgtgcaagttcatcagctccccatgcataaccagccacaagctcccaagtctctaaag 104  Q
    ||||| || ||||||||||||| |||||| |||||||| | |||||||||   | ||||||||||||||||| |||  ||   ||   || ||||| |||    
T  28769429 ttggtcttataatgggaggcatagttaagctccatgtataggtgtgcaagggaagcagctccccatgcataatcagagacggact-taaaatctctgaag 28769331  T
Q  105 tacttcagataagcaacattcacatagtatgcactcttgtcagtgaagagtgtgatatccaccaagaagagtaaatatatgcgga 189  Q
    ||| ||| |||||  |||| |||||||   || |||||||||||||||||  ||||| ||| |||| | || |||||||||||||    
T  28769330 tacctcaaataagtgacatccacataggtggcgctcttgtcagtgaagagcatgatacccatcaagtatagcaaatatatgcgga 28769246  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 1347471 - 1347632
Alignment:
Q  30 taagttccatgtacaagtgtgcaagttcatcagctccccatgcataaccagccacaagctcccaagtctctaaagtacttcagataagcaacattcacat 129  Q
    |||| ||| |||||| |||||||||| || || ||||||||    || |||  ||||||||| |||||||| |||||| | |  ||||| |||| |||||    
T  1347471 taagctccttgtacaggtgtgcaagtgcagcatctccccatatgcaatcagagacaagctcc-aagtctctgaagtacctaaactaagcgacatccacat 1347569  T
Q  130 agtatgcactcttgtcagtgaagagtgtgatatccaccaagaagagtaaatatatgcggagag 192  Q
    ||   |||||||||||||||||||| |||||| |||||||| |||| |||| |||||| ||||    
T  1347570 aggtggcactcttgtcagtgaagagcgtgatacccaccaagtagagaaaatttatgcgaagag 1347632  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 34661971 - 34662042
Alignment:
Q  138 ctcttgtcagtgaagagtgtgatatccaccaagaagagtaaatatatgcggagagcctactcccgcaacctc 209  Q
    |||||||||||||||| ||||||  |||||||| | |  ||||||||||||| |||||  ||||||||||||    
T  34661971 ctcttgtcagtgaagattgtgattcccaccaagtacaacaaatatatgcggacagcctggtcccgcaacctc 34662042  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 192
Target Start/End: Complemental strand, 8269606 - 8269443
Alignment:
Q  28 gttaagttccatgtacaagtgtgcaagttcatcagctccccatgcataaccagccacaagctcccaagtctctaaagtacttcagataagcaacattcac 127  Q
    |||||| ||| | ||||||||||  ||| || |||||||| | | ||||||| | |||| |||| || |||||||||||| |||||||  |||||| |||    
T  8269606 gttaagctccctatacaagtgtgatagtgcagcagctcccgacgaataaccaacaacaacctcc-aattctctaaagtacctcagatagacaacatccac 8269508  T
Q  128 atagtatgcactcttgtcagtgaagagtgtgatatccaccaagaagagtaaatatatgcggagag 192  Q
    ||||   |  |||||||||||||| |  |||||  |||||||| | |  ||||||||||||||||    
T  8269507 ataggtggtgctcttgtcagtgaataacgtgatccccaccaagtacatcaaatatatgcggagag 8269443  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 17999166 - 17999340
Alignment:
Q  14 taatgggaggcattgttaagttccatgtacaagtgtgcaagttcatcagctccccatgcataaccagccacaagctcccaagtctctaaagtacttcaga 113  Q
    |||||||||||||||||||| | |||||| | |||||||||  || | | ||||||||||||| ||   |||  ||   || ||||| |||||| ||| |    
T  17999166 taatgggaggcattgttaagctacatgtataggtgtgcaagggcagcgggtccccatgcataatcaaagacagacttaaaa-tctctgaagtacctcaaa 17999264  T
Q  114 taagcaacattcacatagtatgcactcttgtcagtgaagagtgtgatatccaccaagaagagtaaatatatgcgga 189  Q
    ||||  |||| |||||||   ||||||||||||||||||||  ||||| ||| |||| | || |||||||||||||    
T  17999265 taagtgacatccacataggtggcactcttgtcagtgaagagcatgatacccatcaagtatagcaaatatatgcgga 17999340  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 209
Target Start/End: Original strand, 25062136 - 25062250
Alignment:
Q  95 gtctctaaagtacttcagataagcaacattcacatagtatgcactcttgtcagtgaagagtgtgatatccaccaagaagagtaaatatatgcggagagcc 194  Q
    |||||| |||||| | |||||  |||||| ||||||||  || ||||||||||||||||| |||||  |||||||| | |  | |||||||  |||||||    
T  25062136 gtctctgaagtaccttagatatacaacatccacatagttagcgctcttgtcagtgaagagcgtgatccccaccaagtacatcagatatatgtagagagcc 25062235  T
Q  195 tactcccgcaacctc 209  Q
    |  ||||||||||||    
T  25062236 tggtcccgcaacctc 25062250  T

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Target: scaffold0766 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 4007 - 3963
Alignment:
Q  126 acatagtatgcactcttgtcagtgaagagtgtgatatccaccaag 170  Q
    ||||||| ||| ||||||| ||||||||| |||||||||||||||    
T  4007 acatagtttgcgctcttgttagtgaagagcgtgatatccaccaag 3963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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