View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20717_low_22 (Length: 242)
Name: NF20717_low_22
Description: NF20717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20717_low_22 |
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| [»] scaffold0340 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 39 - 227
Target Start/End: Original strand, 6440936 - 6441125
Alignment:
| Q |
39 |
gacagggaagcatgaacaaatcatattaaataagttattagattatattatccattcttatatgcttgtgcaattatgcttttgacacgtactattatta |
138 |
Q |
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| T |
6440936 |
gacagggaagcatgaacaaatcatattaaataagttattagattatattatccattcttatatgcttgtgcaattatgcttttgacacgtactattatta |
6441035 |
T |
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| Q |
139 |
ttc-tttgattaatagtacaaattttggcttttgcattattgtactatacttccccatttaattatcgatcgatcttcacaagagaaaat |
227 |
Q |
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| T |
6441036 |
ttcttttcattaatagtacaatttttggcttttgcattattgtactatactttcccatttaattatcgatcgatcttcacaagagaaaat |
6441125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 23766347 - 23766240
Alignment:
| Q |
46 |
aagcatgaacaaatcatattaaataagttattagattatatt---------atccattcttatatgcttgtgcaattatgcttttgacacgtactattat |
136 |
Q |
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| T |
23766347 |
aagcatgaacaaatcatattaaataagttattagattatatttcttttttaaggaattcttatctgcttgtgcaattatgcttttgacacgtactatcat |
23766248 |
T |
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| Q |
137 |
tattcttt |
144 |
Q |
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|||||||| |
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| T |
23766247 |
tattcttt |
23766240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 23766201 - 23766143
Alignment:
| Q |
160 |
ttttggcttttgcattattgtactatac-ttccccatttaa-ttatcgatcgatcttca |
216 |
Q |
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| T |
23766201 |
ttttggcttttgcattattgtactatacttttcccatttaatttattgatcgatcttca |
23766143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 12964 - 13022
Alignment:
| Q |
160 |
ttttggcttttgcattattgtactata-cttccccatttaa-ttatcgatcgatcttca |
216 |
Q |
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| T |
12964 |
ttttggcttttgcattattgtactatattttccccatttaatttatcgatcgatcttca |
13022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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