View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20718_high_4 (Length: 492)
Name: NF20718_high_4
Description: NF20718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20718_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Complemental strand, 6232902 - 6232433
Alignment:
| Q |
18 |
aacggaaacattaagatttcagatttcggccttgcgaaagagataggtgtagaacaaggtgaaaagtggcaaccgagaggaactccgatgattatgtcac |
117 |
Q |
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| T |
6232902 |
aacggaaacattaagatttcagatttcgggcttgcgaaagagacaggtgtagaacaaggtgaaaagtggcaaccgagaggaactccgatgattatgtcac |
6232803 |
T |
|
| Q |
118 |
cagaagcagtgaatgatagtgtttatgaatcgccagccgatatatgggctcttggttgcgccgtcgtggagatgattaccggagaacccgc---atggaa |
214 |
Q |
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| T |
6232802 |
cagaagcagtgaatgatagtgtgtatgaatcgtcagccgatatatgggctcttggttgcgccgtcgtggagatgattaccggagaacccgccgcatggaa |
6232703 |
T |
|
| Q |
215 |
tgagtcagatatgttaatgttgacgattcgaattggggttggagaagaattgccaaagattccagacgaattatcacaagaaggaaaagattttctagaa |
314 |
Q |
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| T |
6232702 |
tgaatcagatatgttgatgttgacgattcgaattggtgttggagaagaattgccaaaaattccagaggaattatcacaagaaggaaaagattttttagaa |
6232603 |
T |
|
| Q |
315 |
aagtgtttcattaaggatcctttgagaagatggacagcagatatgctcttcaaacatccgtttatctccgatgttgaaactgtttcagttgtaaatgagt |
414 |
Q |
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| T |
6232602 |
aagtgtttcattaaggatcctttgagaagatggacagcagatatgctcttcaaacatccgtttatctccgatgttgaaactgtttcagttgtaaatgagt |
6232503 |
T |
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| Q |
415 |
tagttgatgagttgccattgtcttcaccttctccaaaaacttacttcaatatgctcattgtgtttcttct |
484 |
Q |
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| T |
6232502 |
tagttgatgagttgccattgtcttcaccttctccaaaaacttacttcaatatgctcattgtgtttcttct |
6232433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 28 - 436
Target Start/End: Complemental strand, 6222116 - 6221699
Alignment:
| Q |
28 |
ttaagatttcagatttcggccttgcgaaagagataggtgtagaacaaggtgaaaagtggcaaccgagaggaactccgatgattatgtcaccagaagcagt |
127 |
Q |
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|||||||||| ||||| |||||||| || |||| |||| || |||| |||| ||| | | || || |||||||| || ||||||||||||||| || |
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| T |
6222116 |
ttaagatttcggattttggccttgctaaggagaaaggtctaaaacatggtggaaaattggaatgtaggggaactccattgtatatgtcaccagaagcggt |
6222017 |
T |
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| Q |
128 |
gaatgatagtgtttatgaatcgccagccgatatatgggctcttggttgcgccgtcgtggagatgattaccggagaacccgcatggaatg-----ag---- |
218 |
Q |
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| T |
6222016 |
gaacgagagtgtttatgaatcaccggcagatatatgggctcttggttgcgctattgtggagatggctacgggtaaacatgcatggaatgtaagcagcggt |
6221917 |
T |
|
| Q |
219 |
tcagatatgttaatgttgacgattcgaattggggttggagaagaattgccaaagattccagacgaattatcacaagaaggaaaagattttctagaaaagt |
318 |
Q |
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| T |
6221916 |
tcaaatatgtggtcgttgttaattcgaattggggcagaagacgaatcaccgttgattccagatgaattatcacaagtcggaaaagattttctcgaaaagt |
6221817 |
T |
|
| Q |
319 |
gtttcattaaggatcctttgagaagatggacagcagatatgctcttcaaacatccgtttatctccgatgttgaaactgtttcagttgtaaatgagttagt |
418 |
Q |
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||||||| |||||||||| | ||||||||| ||||| ||||| || |||||| ||||||||| | || ||||||||||||| | || || ||||| | |
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| T |
6221816 |
gtttcatcaaggatccttcaaaaagatggacggcagagatgcttttgaaacatgagtttatctcaggtgatgaaactgtttcattggtgaaagagttgat |
6221717 |
T |
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| Q |
419 |
tgatgagttgccattgtc |
436 |
Q |
| |
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|||||||||||||||| |
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| T |
6221716 |
caatgagttgccattgtc |
6221699 |
T |
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