View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20718_high_6 (Length: 330)
Name: NF20718_high_6
Description: NF20718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20718_high_6 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 126 - 330
Target Start/End: Complemental strand, 6136335 - 6136131
Alignment:
| Q |
126 |
agagagatgagtcgtctggtgatgatgaattgcactcttctatttctccaacaagattaaattcagcaaacaagtcgaatacagatgaggtttttcttta |
225 |
Q |
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| T |
6136335 |
agagagatgagtcgtctggtgatgatgaattgcacccttctatttctccaacaagattaaattcagcaaacaagtcgaagacagatgaggtttttcttta |
6136236 |
T |
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| Q |
226 |
ttccttaatgacatgaaacatccttcattcttaatgcaaactactttattccttaatgatacttatggttgattgtatcattaccaggaaactaagcatc |
325 |
Q |
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| T |
6136235 |
ttccttaatgacatgaaaaatccttcattcttaatgcaaactactttattccttaatgatacttatggttgattgtatcattaccaggaaactaagcatc |
6136136 |
T |
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| Q |
326 |
ttcaa |
330 |
Q |
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||||| |
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| T |
6136135 |
ttcaa |
6136131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 144 - 330
Target Start/End: Complemental strand, 6174372 - 6174186
Alignment:
| Q |
144 |
gtgatgatgaattgcactcttctatttctccaacaagattaaattcagcaaacaagtcgaatacagatgaggtttttctttattccttaatgacatgaaa |
243 |
Q |
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|||||||||| || ||||||||||||||||| ||||||||||||||| || ||| |||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
6174372 |
gtgatgatgatttacactcttctatttctccgacaagattaaattcaacagacaggtcgaagacagatgaggtttttctttattccttagtgacatgaaa |
6174273 |
T |
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| Q |
244 |
catccttcattcttaatgcaaactactttattccttaatgatacttatggttgattgtatcattaccaggaaactaagcatcttcaa |
330 |
Q |
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| T |
6174272 |
caactttcattcttaatgcaaactactttattccttaataatacttatggttgattgtttcattaccaggaaactaagaatcttcaa |
6174186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 6119136 - 6119248
Alignment:
| Q |
126 |
agagagatgagtcgtctggtgatgatgaattgcactcttctatttctccaacaagattaaattcagcaaacaagtcgaatacagatgaggtttttcttta |
225 |
Q |
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||||||| ||||| || | |||| ||||||| |||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| |||||||| |
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| T |
6119136 |
agagagacgagtcttccgttgattatgaattacactcttctatttctccaacaagattaaattcagcagacaattcgaagacagatgaggtgtttcttta |
6119235 |
T |
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| Q |
226 |
ttccttaatgaca |
238 |
Q |
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|||||||||||| |
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| T |
6119236 |
ctccttaatgaca |
6119248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 6119231 - 6119292
Alignment:
| Q |
269 |
ctttattccttaatgatacttatggttgattgtatcattaccaggaaactaagcatcttcaa |
330 |
Q |
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| T |
6119231 |
ctttactccttaatgacacttatggttgattgtttcattacctggaaactaagaatcttcaa |
6119292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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