View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20718_low_1 (Length: 676)

Name: NF20718_low_1
Description: NF20718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20718_low_1
NF20718_low_1
[»] chr7 (3 HSPs)
chr7 (23-390)||(48520660-48521027)
chr7 (394-662)||(48521321-48521590)
chr7 (406-662)||(39440569-39440824)
[»] chr1 (2 HSPs)
chr1 (406-624)||(19192691-19192908)
chr1 (406-623)||(44199844-44200060)
[»] scaffold0683 (1 HSPs)
scaffold0683 (406-604)||(7478-7675)
[»] scaffold0557 (2 HSPs)
scaffold0557 (471-662)||(7471-7662)
scaffold0557 (441-559)||(7323-7444)
[»] chr2 (2 HSPs)
chr2 (406-559)||(29467807-29467960)
chr2 (471-662)||(29467589-29467780)
[»] chr6 (6 HSPs)
chr6 (471-662)||(14464502-14464693)
chr6 (441-559)||(18716158-18716278)
chr6 (439-559)||(15906147-15906269)
chr6 (482-623)||(18716300-18716439)
chr6 (502-559)||(14464418-14464475)
chr6 (406-479)||(14464345-14464418)
[»] chr5 (1 HSPs)
chr5 (439-559)||(42882125-42882248)
[»] chr8 (3 HSPs)
chr8 (439-559)||(7964014-7964136)
chr8 (439-559)||(8224613-8224737)
chr8 (482-662)||(7963759-7963937)
[»] chr4 (3 HSPs)
chr4 (471-624)||(19110984-19111137)
chr4 (439-559)||(19111164-19111286)
chr4 (573-611)||(8364635-8364673)
[»] scaffold0726 (2 HSPs)
scaffold0726 (471-662)||(4690-4881)
scaffold0726 (439-559)||(4908-5030)


Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 23 - 390
Target Start/End: Original strand, 48520660 - 48521027
Alignment:
Q  23 gggggttaaccaccatgacttccttcctattttcttactttatgtatccaagtccaatgccattgacttccaaaacagctcctccaagtggttccctctt 122  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48520660 ggggggtaaccaccatgacttccttcctattttcttactttatgtatccaagtccaatgccattgccttccaaaacagctcctccaagtggttccctctt 48520759  T
Q  123 cttcctccttgttctccttctccctcactttgtttctcaataggttgcacacaatatattttacttagcacacaaatgatttttgttaattctttctaca 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48520760 cttcctccttgttctccttctccctcactttgtttctcaataggttgcacacaatatattttacttagcatacaaatgatttttgttaattctttctaca 48520859  T
Q  223 tctttaactnnnnnnnnncataattaaaaagaagtaaaccccgtttaatttgtacaattgaaaacaataagaaaacctttatatctctcttggttgatgg 322  Q
    | ||||||          ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48520860 tttttaaccaaaaaaaaacataactaaaaagaagtaaaccccgtttaatttgtacaattgaaaacaataagaaaacctttatatctctcttggttgatgg 48520959  T
Q  323 aataacatctcacaaactggtgaatatgaaacgtaaaaaataattagccattgttatatattaaaata 390  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48520960 aataaaatctcacaaactggtgcatatgaaacgtaaaaaataattagccattgttatatattaaaata 48521027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 394 - 662
Target Start/End: Original strand, 48521321 - 48521590
Alignment:
Q  394 agtagatcaaaagatatgggagattttcaaactataattcatccacatatgggatgtaaataggatattcaagatccaaaagcatagcatatacttgctt 493  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48521321 agtagatcaaaagatatgggagcttttcaaactataattcatccacatatgggatgtaaataggatattcaagatccaaaagcatagcatatacttgctt 48521420  T
Q  494 ttaatatgattccaaaatatgaatgtgaatatgtaagtatcatttacaaagcataatgactttt-aattttttcttcttctaagaataagacaaacatct 592  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  48521421 ttaatatgattccaaaatatcaatgtgaatctgtaagtatcatttacaaagcataatgacttttaaatttttttttcttctaagaataagacaaacatct 48521520  T
Q  593 tacatcatgttattgtgttgaccaattgaaacgatgctaggaacaaacttcaatttaacagaagaataat 662  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48521521 tacatcatgttattgtgttgaccaattgaaacgatgctaggaacaaacttcaatttaacagaagaataat 48521590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 406 - 662
Target Start/End: Original strand, 39440569 - 39440824
Alignment:
Q  406 gatatgggagattttcaaactataattcatccacatatgggatgtaaataggatattcaagatccaaaagcatagcatat--acttgcttttaatatgat 503  Q
    ||||| |||||| |||||  ||||| |||||||||||||||||| ||||||||||||||||||  |||||||||| ||||  ||||||| |||| |||||    
T  39440569 gatataggagatattcaacatataaatcatccacatatgggatggaaataggatattcaagataaaaaagcatagtatatatacttgctcttaagatgat 39440668  T
Q  504 tccaaaatatgaatgtgaatatgtaagtatcatttacaaagcataatgacttttaattttttcttcttctaagaataagacaaacatcttacatcatgtt 603  Q
    |||||||| ||||||||||  |||||||||||||||||||||||| |||||||||| | |   |  |||||||||||| ||||||||||| |||| ||||    
T  39440669 tccaaaatttgaatgtgaacttgtaagtatcatttacaaagcatagtgacttttaaatat---tatttctaagaataatacaaacatcttgcatcgtgtt 39440765  T
Q  604 attgtgttgaccaattgaaacgatgctaggaacaaacttcaatttaacagaagaataat 662  Q
    ||||||||||||| |||||||  ||  || |||| ||||  |||||||| |||||||||    
T  39440766 attgtgttgaccacttgaaaccgtgtaagaaacatacttagatttaacaaaagaataat 39440824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 406 - 624
Target Start/End: Complemental strand, 19192908 - 19192691
Alignment:
Q  406 gatatgggagattttcaaactataattcatccacatatgggatgtaaataggatattcaagatccaaaagcatagcatata--cttgcttttaatatgat 503  Q
    ||||| |||||| |||||  ||||| |||||||||||||||| | ||||||||||||||||||  ||||| |||| |||||  |||||| || | |||||    
T  19192908 gatataggagatattcaacatataaatcatccacatatgggaagaaaataggatattcaagataaaaaagtatagtatatatacttgctctttagatgat 19192809  T
Q  504 tccaaaatatgaatgtgaatatgtaagtatcatttacaaagcataatgacttttaattttttcttcttctaagaataagacaaacatcttacatcatgtt 603  Q
    |||| ||| ||||||||||  |||||||||||||||||||||||| |||||||||| | |   |  |||||||||||| |||||||||||||||| ||||    
T  19192808 tccataatttgaatgtgaacttgtaagtatcatttacaaagcatagtgacttttaaatat---tatttctaagaataatacaaacatcttacatcgtgtt 19192712  T
Q  604 attgtgttgaccaattgaaac 624  Q
    ||||||||||||| |||||||    
T  19192711 attgtgttgaccacttgaaac 19192691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 406 - 623
Target Start/End: Complemental strand, 44200060 - 44199844
Alignment:
Q  406 gatatgggagattttcaaactataattcatccacatatgggatgtaaataggatattcaagatccaaaagcatagcatata--cttgcttttaatatgat 503  Q
    ||||| |||||| |||||  ||||| |||||||||||||||||| |||||||||||| |||||  |||||||||  |||||  |||||| |||| |||||    
T  44200060 gatataggagatattcaacatataaatcatccacatatgggatggaaataggatattaaagataaaaaagcataatatatatacttgctcttaagatgat 44199961  T
Q  504 tccaaaatatgaatgtgaatatgtaagtatcatttacaaagcataatgacttttaattttttcttcttctaagaataagacaaacatcttacatcatgtt 603  Q
    |||| ||| ||||||| ||  |||||||||||||||||||||||| |||||||||| | |   |  |||||||||||| |||||||||||  ||| ||||    
T  44199960 tccataatttgaatgtaaacttgtaagtatcatttacaaagcatagtgacttttaaatat---tatttctaagaataatacaaacatcttgtatcgtgtt 44199864  T
Q  604 attgtgttgaccaattgaaa 623  Q
    ||||||||||||| ||||||    
T  44199863 attgtgttgaccacttgaaa 44199844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0683 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 406 - 604
Target Start/End: Complemental strand, 7675 - 7478
Alignment:
Q  406 gatatgggagattttcaaactataattcatccacatatgggatgtaaataggatattcaagatccaaaagcatag--catatacttgcttttaatatgat 503  Q
    ||||| |||||| |||||  ||||| |||||||||||||||||| ||||||||||||||||||  ||||||||||   ||||||||||| |||| |||||    
T  7675 gatataggagatattcaacatataaatcatccacatatgggatggaaataggatattcaagataaaaaagcatagtctatatacttgctcttaagatgat 7576  T
Q  504 tccaaaatatgaatgtgaatatgtaagtatcatttacaaagcataatgacttttaattttttcttcttctaagaataagacaaacatcttacatcatgtt 603  Q
    || | ||| |||| |||||  |||||||||||||||||||||||| ||| |||||| | |   |  |||||||||||| ||||||||||| |||| ||||    
T  7575 tctagaatttgaacgtgaacttgtaagtatcatttacaaagcatagtgatttttaaatat---tatttctaagaataatacaaacatcttgcatcgtgtt 7479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 471 - 662
Target Start/End: Original strand, 7471 - 7662
Alignment:
Q  471 aaaagcatagcatata--cttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatcattt-acaaagcataatgacttttaattttttct 567  Q
    ||||||||||||||||  |||||| |||| ||||||||||||| | ||||||||  |||||||||||||| |||||||||| |||||||||| | ||  |    
T  7471 aaaagcatagcatatatacttgctattaaaatgattccaaaattttaatgtgaacttgtaagtatcattttacaaagcatattgacttttaaatattatt 7570  T
Q  568 tcttctaagaataagacaaacatcttacatcatgttattgtgttgaccaattgaaacgatgctaggaacaaacttcaatttaacagaagaataat 662  Q
    | |   |||||||| ||||||||||| |||||||||||||||||||||| |||||||  ||  ||||||| ||||  ||||||||||||| ||||    
T  7571 ttt---aagaataatacaaacatcttgcatcatgttattgtgttgaccacttgaaaccgtgtaaggaacatacttagatttaacagaagattaat 7662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 441 - 559
Target Start/End: Original strand, 7323 - 7444
Alignment:
Q  441 tatgggatgtaaataggatattcaagatccaaaa-gcatagcatat--acttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatcatt 537  Q
    ||||||||  ||||||||||||||||||  |||| |||||| ||||  ||||||| |||| ||||||||||||| ||||||||||| |||||||||||||    
T  7323 tatgggatagaaataggatattcaagatgaaaaaagcatagtatatatacttgctcttaagatgattccaaaatttgaatgtgaatttgtaagtatcatt 7422  T
Q  538 tacaaagcataatgacttttaa 559  Q
    ||||||||||| ||||||||||    
T  7423 tacaaagcatattgacttttaa 7444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 406 - 559
Target Start/End: Complemental strand, 29467960 - 29467807
Alignment:
Q  406 gatatgggagattttcaaactataattcatccacatatgggatgtaaataggatattcaagatccaaaagcatagcatata--cttgcttttaatatgat 503  Q
    ||||| |||||| || || ||||||||  ||| ||||||||||  ||||||||||||||||||  |||||||||| |||||  |||||| |||  |||||    
T  29467960 gatataggagatattgaacctataatt--tcctcatatgggatagaaataggatattcaagataaaaaagcatagtatatatacttgctcttatgatgat 29467863  T
Q  504 tccaaaatatgaatgtgaatatgtaagtatcatttacaaagcataatgacttttaa 559  Q
    |||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  29467862 tccaaaatttgaatgtgaatttgtaagtatcatttacaaagcatattgacttttaa 29467807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 471 - 662
Target Start/End: Complemental strand, 29467780 - 29467589
Alignment:
Q  471 aaaagcatagcatata--cttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatca-tttacaaagcataatgacttttaattttttct 567  Q
    ||||||||||||||||  ||||||  ||| ||||||||||||| | ||||||||  ||||||||||| ||||||||||||| |||||||||| | |   |    
T  29467780 aaaagcatagcatatatacttgctcataaaatgattccaaaattttaatgtgaacttgtaagtatcattttacaaagcatattgacttttaaatat---t 29467684  T
Q  568 tcttctaagaataagacaaacatcttacatcatgttattgtgttgaccaattgaaacgatgctaggaacaaacttcaatttaacagaagaataat 662  Q
      || ||||||||| ||||  ||||| ||| |||||||||||||||||| |||||||  ||  || |||| ||||  ||||||||||||| ||||    
T  29467683 atttttaagaataatacaacaatcttgcattatgttattgtgttgaccacttgaaaccgtgtaagaaacatacttagatttaacagaagattaat 29467589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 8e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 471 - 662
Target Start/End: Original strand, 14464502 - 14464693
Alignment:
Q  471 aaaagcatagcatat--acttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatca-tttacaaagcataatgacttttaattttttct 567  Q
    |||||||||||||||  ||||||| |||| ||||||||||||| | ||||||||  ||||||||||| ||||||||||||| |||||||||| | |   |    
T  14464502 aaaagcatagcatatatacttgctcttaaaatgattccaaaattttaatgtgaacttgtaagtatcattttacaaagcatattgacttttaaatat---t 14464598  T
Q  568 tcttctaagaataagacaaacatcttacatcatgttattgtgttgaccaattgaaacgatgctaggaacaaacttcaatttaacagaagaataat 662  Q
      || ||||||||| ||||||||||| |||||||||| ||||||||||| |||||||  ||  ||||||| ||||  ||||||||||||| ||||    
T  14464599 atttttaagaataatacaaacatcttgcatcatgttactgtgttgaccacttgaaaccgtgtaaggaacatacttagatttaacagaagattaat 14464693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 441 - 559
Target Start/End: Original strand, 18716158 - 18716278
Alignment:
Q  441 tatgggatgtaaataggatattcaagatccaaaagcatagcatat--acttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatcattt 538  Q
    ||||||||  ||||||||||||||||||  |||||||||| ||||  ||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||    
T  18716158 tatgggatagaaataggatattcaagataaaaaagcatagtatatatacttgctcttaagatgattccaaaatttgaatgtgaatttgtaagtatcattt 18716257  T
Q  539 acaaagcataatgacttttaa 559  Q
    |||||||||| |||| |||||    
T  18716258 acaaagcatattgacatttaa 18716278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 439 - 559
Target Start/End: Complemental strand, 15906269 - 15906147
Alignment:
Q  439 catatgggatgtaaataggatattcaagatccaaaagcatag--catatacttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatcat 536  Q
    ||||||||||  ||||||||||||||||||  |||| || ||   ||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||    
T  15906269 catatgggatagaaataggatattcaagataaaaaaacaaagtatatatacttgctcttaagatgattccaaaatttgaatgtgaatttgtaagtatcat 15906170  T
Q  537 ttacaaagcataatgacttttaa 559  Q
    |||||||||||| ||||||||||    
T  15906169 ttacaaagcatattgacttttaa 15906147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 482 - 623
Target Start/End: Original strand, 18716300 - 18716439
Alignment:
Q  482 atatacttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatca-tttacaaagcataatgacttttaattttttcttcttctaagaata 580  Q
    ||||||||||| |||| ||||||||||||| | ||||| ||  ||||||||||| ||||||||||||| |||||||||| | |   |  || ||||||||    
T  18716300 atatacttgctcttaaaatgattccaaaattttaatgtaaacttgtaagtatcattttacaaagcatattgacttttaaatat---tatttttaagaata 18716396  T
Q  581 agacaaacatcttacatcatgttattgtgttgaccaattgaaa 623  Q
    | |||||||| || |||||||||| ||||||||||| ||||||    
T  18716397 atacaaacatattgcatcatgttaatgtgttgaccacttgaaa 18716439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 502 - 559
Target Start/End: Original strand, 14464418 - 14464475
Alignment:
Q  502 attccaaaatatgaatgtgaatatgtaagtatcatttacaaagcataatgacttttaa 559  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  14464418 attccaaaatttgaatgtgaatttgtaagtatcatttacaaagcatattgacttttaa 14464475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 406 - 479
Target Start/End: Original strand, 14464345 - 14464418
Alignment:
Q  406 gatatgggagattttcaaactataattcatccacatatgggatgtaaataggatattcaagatccaaaagcata 479  Q
    ||||| |||||| || || |||||| |||||| ||||||||||  ||||||||||||||||||  |||||||||    
T  14464345 gatataggagatcttgaacctataaatcatcctcatatgggatagaaataggatattcaagataaaaaagcata 14464418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 439 - 559
Target Start/End: Complemental strand, 42882248 - 42882125
Alignment:
Q  439 catatgggatgtaaataggatattcaagatccaaaa-gcatagcatata--cttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatca 535  Q
    ||||||||||  ||||||||||||||||||  |||| ||||||||||||  |||||| |||| |||||| |||||| ||||||||||| |||||||||||    
T  42882248 catatgggatagaaataggatattcaagataaaaaaagcatagcatatatacttgctcttaagatgatttcaaaatttgaatgtgaatttgtaagtatca 42882149  T
Q  536 tttacaaagcataatgacttttaa 559  Q
    ||||||||||||| ||||||||||    
T  42882148 tttacaaagcatattgacttttaa 42882125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 439 - 559
Target Start/End: Complemental strand, 7964136 - 7964014
Alignment:
Q  439 catatgggatgtaaataggatattcaagatccaaaagcatagcatata--cttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatcat 536  Q
    ||||||||||  |||||||||| |||||||  |||||||||| |||||  |||||| |||| ||||||||||||| ||||||||||| ||||||||||||    
T  7964136 catatgggatagaaataggatagtcaagataaaaaagcatagtatatatacttgctcttaagatgattccaaaatttgaatgtgaatttgtaagtatcat 7964037  T
Q  537 ttacaaagcataatgacttttaa 559  Q
    |||||||| ||| ||||||||||    
T  7964036 ttacaaagaatattgacttttaa 7964014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 439 - 559
Target Start/End: Original strand, 8224613 - 8224737
Alignment:
Q  439 catatgggatgtaaataggatattcaagat--ccaaaagcatag--catatacttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatc 534  Q
    ||||||||||  ||||||||||||||||||    ||||||||||   |||||||| || |||| |||||| |||||| ||||||||||| ||||||||||    
T  8224613 catatgggatagaaataggatattcaagataaaaaaaagcatagtatatatacttactcttaagatgatttcaaaatttgaatgtgaatttgtaagtatc 8224712  T
Q  535 atttacaaagcataatgacttttaa 559  Q
    |||||||||||||| ||||||||||    
T  8224713 atttacaaagcatattgacttttaa 8224737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 482 - 662
Target Start/End: Complemental strand, 7963937 - 7963759
Alignment:
Q  482 atatacttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatca-tttacaaagcataatgacttttaattttttcttcttctaagaata 580  Q
    ||||||||||| |||| ||||||| ||||| | ||||||||    ||||||||| ||||||||||||| |||||||||| | |   |  || ||||||||    
T  7963937 atatacttgctcttaaaatgattctaaaattttaatgtgaactgttaagtatcattttacaaagcatattgacttttaaatat---tatttttaagaata 7963841  T
Q  581 agacaaacatcttacatcatgttattgtgttgaccaattgaaacgatgctaggaacaaacttcaatttaacagaagaataat 662  Q
      ||||||||||| |||| ||||||||||||||||| |||| ||  ||  ||||| | ||||  ||||||||||||| ||||    
T  7963840 gtacaaacatcttgcatcgtgttattgtgttgaccacttgacaccgtgtaaggaaaatacttagatttaacagaagattaat 7963759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 471 - 624
Target Start/End: Complemental strand, 19111137 - 19110984
Alignment:
Q  471 aaaagcatagcatata--cttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatca-tttacaaagcataatgacttttaattttttct 567  Q
    ||||||||||||||||  |||||| |||| ||||||||||||| | ||||||||  ||||||||||| ||||||||||||| |||||||||| | |   |    
T  19111137 aaaagcatagcatatatacttgctcttaaaatgattccaaaattttaatgtgaacttgtaagtatcattttacaaagcatattgacttttaaatat---t 19111041  T
Q  568 tcttctaagaataagacaaacatcttacatcatgttattgtgttgaccaattgaaac 624  Q
      || ||||||||| ||||||||||| |||||||||||||||||||||| |||||||    
T  19111040 atttttaagaataatacaaacatcttgcatcatgttattgtgttgaccacttgaaac 19110984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 439 - 559
Target Start/End: Complemental strand, 19111286 - 19111164
Alignment:
Q  439 catatgggatgtaaataggatattcaagatccaaaagcatagcatata--cttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatcat 536  Q
    ||||||||||  ||||||||||||||||||  |||||||||  |||||  |||||| |||| |||||| |||||| ||||||||||| ||||||||||||    
T  19111286 catatgggatagaaataggatattcaagataaaaaagcatattatatatacttgctcttaagatgatttcaaaatttgaatgtgaatttgtaagtatcat 19111187  T
Q  537 ttacaaagcataatgacttttaa 559  Q
    |||||||||||| ||||||||||    
T  19111186 ttacaaagcatattgacttttaa 19111164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 573 - 611
Target Start/End: Complemental strand, 8364673 - 8364635
Alignment:
Q  573 taagaataagacaaacatcttacatcatgttattgtgtt 611  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  8364673 taagaataatacaaacatcttacattatgttattgtgtt 8364635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 471 - 662
Target Start/End: Complemental strand, 4881 - 4690
Alignment:
Q  471 aaaagcatagcatata--cttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatcattt-acaaagcataatgacttttaattttttct 567  Q
    ||||||||||||||||  |||| | |||| ||||||||||||| | ||||||||  |||||||||||||| |||||||||| |||||||||| | ||  |    
T  4881 aaaagcatagcatatatacttggtcttaaaatgattccaaaattttaatgtgaacttgtaagtatcattttacaaagcatattgacttttaaatattatt 4782  T
Q  568 tcttctaagaataagacaaacatcttacatcatgttattgtgttgaccaattgaaacgatgctaggaacaaacttcaatttaacagaagaataat 662  Q
    | |   |||||||| ||||||||||| |||||||||| ||||||||||| |||||||  ||  ||||||| ||||  ||||||||||||| ||||    
T  4781 ttt---aagaataatacaaacatcttgcatcatgttaatgtgttgaccacttgaaaccgtgtaaggaacatacttagatttaacagaagattaat 4690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 439 - 559
Target Start/End: Complemental strand, 5030 - 4908
Alignment:
Q  439 catatgggatgtaaataggatattcaagatccaaaagcatag--catatacttgcttttaatatgattccaaaatatgaatgtgaatatgtaagtatcat 536  Q
    ||||||||||  ||||||||||||||||||  |||| || ||   ||||||||||| |||| ||||||||||||| ||||||||||| | ||||||||||    
T  5030 catatgggatagaaataggatattcaagataaaaaaacaaagtatatatacttgctcttaagatgattccaaaatttgaatgtgaatttataagtatcat 4931  T
Q  537 ttacaaagcataatgacttttaa 559  Q
    |||||||||||| ||||||||||    
T  4930 ttacaaagcatattgacttttaa 4908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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