View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20718_low_10 (Length: 219)
Name: NF20718_low_10
Description: NF20718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20718_low_10 |
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| [»] scaffold0148 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 6954667 - 6954566
Alignment:
| Q |
91 |
aataaataaaagtttagaaagtgaaaatcaaaaaaggataggtgcagagactcaatggaagctgttctaacaaatggagttgacaacatttactctttca |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6954667 |
aataaataaaagtttagaaagtgaaaatcaaaaaaggataggtgcagagactcaatggaagctgttctaacaaatggagttgacaacatttactctttca |
6954568 |
T |
|
| Q |
191 |
at |
192 |
Q |
| |
|
|| |
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|
| T |
6954567 |
at |
6954566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 9940366 - 9940291
Alignment:
| Q |
17 |
attaattactcgtttctcaactatattggatgtgtatttaggaggctttagagatattgaagaggtctaaagagaa |
92 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
9940366 |
attaattactcgtttctcaactatattggatgtgtatttaggagattttagagatattggagaggtctaaagagaa |
9940291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 18183422 - 18183523
Alignment:
| Q |
91 |
aataaataaaagtttagaaagtgaaaatcaaaaaaggataggtgcagagactcaatggaagctgttctaacaaatggagttgacaacatttactctttca |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18183422 |
aataaataaaagtttagaaagtgaaaatcaaaaaaggataggtgcagagactcaatggaagctgttctaacaaatggagttgacaacatttactctttca |
18183521 |
T |
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| Q |
191 |
at |
192 |
Q |
| |
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|| |
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| T |
18183522 |
at |
18183523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 35160125 - 35160226
Alignment:
| Q |
91 |
aataaataaaagtttagaaagtgaaaatcaaaaaaggataggtgcagagactcaatggaagctgttctaacaaatggagttgacaacatttactctttca |
190 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35160125 |
aataaataaaagtttagaaagtgaaaattaaaaaaggataggtgcagagactcaatggaagctgttctaacaattggagttgacaacatttactctttca |
35160224 |
T |
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| Q |
191 |
at |
192 |
Q |
| |
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|| |
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|
| T |
35160225 |
at |
35160226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 28712725 - 28712624
Alignment:
| Q |
91 |
aataaataaaagtttagaaagtgaaaatcaaaaaaggataggtgcagagactcaatggaagctgttctaacaaatggagttgacaacatttactctttca |
190 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28712725 |
aataaataaaagtttagaaagtgaaaataaaaaaaggataggtgcagagactcaatggaagctgttctaacaaatggagttgacaatatttactctttca |
28712626 |
T |
|
| Q |
191 |
at |
192 |
Q |
| |
|
|| |
|
|
| T |
28712625 |
at |
28712624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 13622242 - 13622190
Alignment:
| Q |
140 |
actcaatggaagctgttctaacaaatggagttgacaacatttactctttcaat |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13622242 |
actcaatggaagctgttctaacaaatggagttgacaacatttactctttcaat |
13622190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0148 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 14194 - 14256
Alignment:
| Q |
91 |
aataaataaaagtttagaaagtgaaaatcaaaaaaggataggtgcagagactcaatggaagct |
153 |
Q |
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|
|||||||||||||| ||||||||||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
14194 |
aataaataaaagttcagaaagtgaaaatagaaaaaagataggtgcagagactcgatggaagct |
14256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 246993 - 247042
Alignment:
| Q |
122 |
aaaaggataggtgcagagactcaatggaagctgttctaacaaatggagtt |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
246993 |
aaaaggataggtgcagagactcaatggaagctgttctaacgaatcgagtt |
247042 |
T |
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