View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20718_low_3 (Length: 664)

Name: NF20718_low_3
Description: NF20718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20718_low_3
NF20718_low_3
[»] chr8 (31 HSPs)
chr8 (105-326)||(41329832-41330053)
chr8 (417-646)||(41329531-41329760)
chr8 (1-112)||(40423940-40424051)
chr8 (1-103)||(5957831-5957933)
chr8 (1-104)||(12831047-12831150)
chr8 (1-104)||(15197333-15197436)
chr8 (4-106)||(37038477-37038579)
chr8 (1-105)||(4854860-4854964)
chr8 (1-105)||(14547921-14548025)
chr8 (1-104)||(504118-504221)
chr8 (1-104)||(1179937-1180040)
chr8 (1-112)||(15258926-15259037)
chr8 (1-104)||(15048179-15048281)
chr8 (1-104)||(23122594-23122697)
chr8 (1-104)||(34012293-34012396)
chr8 (1-106)||(32032723-32032827)
chr8 (1-112)||(24307790-24307901)
chr8 (1-104)||(30479471-30479574)
chr8 (1-104)||(43414578-43414681)
chr8 (34-104)||(20074964-20075034)
chr8 (1-106)||(44507084-44507189)
chr8 (1-105)||(10284628-10284732)
chr8 (1-105)||(16056398-16056502)
chr8 (1-105)||(16383376-16383480)
chr8 (1-99)||(10621084-10621182)
chr8 (1-105)||(34307215-34307319)
chr8 (1-105)||(42221514-42221618)
chr8 (1-84)||(8841429-8841512)
chr8 (23-105)||(24307628-24307710)
chr8 (1-109)||(9122190-9122288)
chr8 (22-104)||(14055610-14055692)
[»] chr4 (35 HSPs)
chr4 (1-111)||(11511459-11511569)
chr4 (1-105)||(50052425-50052529)
chr4 (1-104)||(41236347-41236450)
chr4 (1-105)||(42044364-42044468)
chr4 (1-105)||(48183046-48183150)
chr4 (1-105)||(480444-480548)
chr4 (1-105)||(29239885-29239989)
chr4 (1-104)||(6034044-6034147)
chr4 (1-106)||(47986206-47986311)
chr4 (4-104)||(50526171-50526271)
chr4 (1-105)||(55475190-55475294)
chr4 (1-107)||(29234242-29234348)
chr4 (1-110)||(8343160-8343269)
chr4 (1-105)||(24995104-24995208)
chr4 (1-104)||(3481654-3481757)
chr4 (1-104)||(54473530-54473633)
chr4 (1-104)||(31910192-31910295)
chr4 (1-105)||(19670713-19670817)
chr4 (25-105)||(29547980-29548060)
chr4 (1-105)||(29977884-29977988)
chr4 (1-105)||(32766957-32767061)
chr4 (37-104)||(40574779-40574846)
chr4 (1-106)||(50813889-50813994)
chr4 (1-105)||(23608234-23608338)
chr4 (1-84)||(17983740-17983823)
chr4 (1-64)||(56300162-56300225)
chr4 (1-99)||(53352563-53352660)
chr4 (1-70)||(41823916-41823985)
chr4 (1-105)||(48647723-48647827)
chr4 (1-108)||(44536743-44536849)
chr4 (1-105)||(47104543-47104647)
chr4 (3-106)||(28480267-28480370)
chr4 (3-106)||(28481142-28481245)
chr4 (3-106)||(28482017-28482120)
chr4 (22-104)||(55079732-55079814)
[»] chr2 (35 HSPs)
chr2 (1-105)||(9058479-9058583)
chr2 (1-101)||(19930817-19930917)
chr2 (1-104)||(13438343-13438446)
chr2 (1-106)||(5574485-5574590)
chr2 (1-106)||(28863453-28863558)
chr2 (1-106)||(33436209-33436314)
chr2 (1-105)||(30915462-30915566)
chr2 (1-105)||(33436097-33436201)
chr2 (1-105)||(42257192-42257296)
chr2 (1-108)||(7465732-7465839)
chr2 (1-104)||(40613899-40614002)
chr2 (1-104)||(40701478-40701581)
chr2 (1-105)||(10249379-10249483)
chr2 (1-104)||(17473020-17473123)
chr2 (1-104)||(27864704-27864807)
chr2 (4-106)||(32505648-32505750)
chr2 (1-105)||(20700814-20700918)
chr2 (1-108)||(41575133-41575241)
chr2 (22-105)||(38882832-38882914)
chr2 (1-112)||(28381652-28381764)
chr2 (1-105)||(45097732-45097836)
chr2 (1-108)||(2533120-2533226)
chr2 (4-104)||(4060685-4060785)
chr2 (1-104)||(38732354-38732457)
chr2 (1-106)||(36168834-36168939)
chr2 (1-105)||(38273139-38273243)
chr2 (1-105)||(26891501-26891605)
chr2 (1-84)||(2997484-2997567)
chr2 (1-104)||(17820001-17820104)
chr2 (1-104)||(43490121-43490224)
chr2 (36-110)||(17823778-17823852)
chr2 (1-84)||(13365373-13365456)
chr2 (4-61)||(3737986-3738043)
chr2 (580-630)||(30329001-30329051)
chr2 (1-98)||(3439985-3440082)
[»] chr7 (38 HSPs)
chr7 (1-112)||(36361910-36362021)
chr7 (1-105)||(8080380-8080484)
chr7 (1-112)||(7389381-7389492)
chr7 (1-106)||(3434560-3434665)
chr7 (1-106)||(36362024-36362129)
chr7 (1-105)||(35468852-35468956)
chr7 (1-104)||(19329842-19329945)
chr7 (1-106)||(26296642-26296747)
chr7 (1-101)||(3783998-3784098)
chr7 (1-109)||(38267035-38267143)
chr7 (1-104)||(35137533-35137636)
chr7 (1-105)||(19436184-19436288)
chr7 (1-105)||(38837216-38837320)
chr7 (1-104)||(4999511-4999614)
chr7 (1-103)||(32951490-32951592)
chr7 (1-105)||(36208172-36208276)
chr7 (1-99)||(35522881-35522979)
chr7 (1-105)||(38044196-38044300)
chr7 (1-105)||(40957706-40957810)
chr7 (1-104)||(40846110-40846213)
chr7 (31-106)||(46033828-46033903)
chr7 (10-104)||(46374808-46374902)
chr7 (4-105)||(7727905-7728006)
chr7 (1-106)||(22343359-22343464)
chr7 (1-106)||(41915739-41915844)
chr7 (1-101)||(3694370-3694470)
chr7 (1-104)||(8238212-8238316)
chr7 (1-109)||(32564423-32564531)
chr7 (58-105)||(11044187-11044234)
chr7 (1-104)||(21234401-21234504)
chr7 (1-106)||(12310904-12311007)
chr7 (36-105)||(45223041-45223110)
chr7 (1-105)||(18207179-18207282)
chr7 (36-103)||(32045838-32045905)
chr7 (25-74)||(16374845-16374894)
chr7 (1-105)||(10343560-10343664)
chr7 (1-104)||(39255921-39256023)
chr7 (70-104)||(31735884-31735918)
[»] chr5 (29 HSPs)
chr5 (1-108)||(2740270-2740377)
chr5 (1-104)||(28177775-28177878)
chr5 (1-104)||(40145407-40145510)
chr5 (1-105)||(13811651-13811755)
chr5 (1-101)||(18520881-18520981)
chr5 (1-110)||(6679692-6679801)
chr5 (4-104)||(14831814-14831914)
chr5 (1-105)||(36732939-36733043)
chr5 (1-104)||(35785199-35785302)
chr5 (1-104)||(42414299-42414402)
chr5 (1-112)||(2252165-2252276)
chr5 (1-104)||(33149635-33149738)
chr5 (1-104)||(33825321-33825424)
chr5 (1-105)||(15409607-15409711)
chr5 (1-104)||(26720516-26720619)
chr5 (1-104)||(26990265-26990368)
chr5 (1-104)||(35943889-35943992)
chr5 (1-103)||(16327902-16328004)
chr5 (1-105)||(3921262-3921366)
chr5 (15-107)||(41470427-41470519)
chr5 (4-105)||(31008987-31009088)
chr5 (4-104)||(20073516-20073616)
chr5 (1-110)||(39688894-39689003)
chr5 (1-105)||(9603812-9603916)
chr5 (45-103)||(36875644-36875702)
chr5 (41-99)||(10356639-10356698)
chr5 (1-60)||(39557514-39557573)
chr5 (1-55)||(25831334-25831388)
chr5 (1-50)||(21370058-21370107)
[»] chr3 (39 HSPs)
chr3 (1-106)||(8956760-8956865)
chr3 (1-110)||(24699951-24700060)
chr3 (1-105)||(11347919-11348023)
chr3 (1-104)||(53982011-53982114)
chr3 (1-106)||(35536624-35536729)
chr3 (1-105)||(27714888-27714992)
chr3 (1-105)||(54868892-54868996)
chr3 (1-104)||(14623836-14623939)
chr3 (1-104)||(33644200-33644303)
chr3 (1-103)||(31456690-31456792)
chr3 (1-105)||(41189761-41189865)
chr3 (1-105)||(49607413-49607517)
chr3 (1-104)||(26141529-26141632)
chr3 (1-103)||(13898052-13898154)
chr3 (1-99)||(52629305-52629403)
chr3 (2-106)||(9562997-9563101)
chr3 (1-104)||(8076393-8076496)
chr3 (1-112)||(17470397-17470508)
chr3 (1-105)||(11095352-11095454)
chr3 (1-104)||(47531865-47531968)
chr3 (1-100)||(48587088-48587187)
chr3 (1-104)||(51419357-51419460)
chr3 (1-99)||(26754700-26754798)
chr3 (23-96)||(39670019-39670092)
chr3 (34-105)||(35965804-35965875)
chr3 (36-105)||(36707456-36707525)
chr3 (1-105)||(33118848-33118952)
chr3 (1-104)||(20764912-20765015)
chr3 (1-104)||(41080709-41080810)
chr3 (1-104)||(45058550-45058652)
chr3 (1-101)||(25407144-25407245)
chr3 (1-110)||(30801730-30801839)
chr3 (1-105)||(11907370-11907474)
chr3 (1-97)||(35093592-35093688)
chr3 (36-107)||(21746213-21746286)
chr3 (1-82)||(36331326-36331407)
chr3 (33-108)||(36331407-36331482)
chr3 (1-106)||(48375703-48375808)
chr3 (1-109)||(25395330-25395438)
[»] chr6 (22 HSPs)
chr6 (1-104)||(17598554-17598657)
chr6 (1-106)||(31976246-31976351)
chr6 (1-104)||(32869678-32869781)
chr6 (1-106)||(11427614-11427721)
chr6 (1-101)||(22880655-22880755)
chr6 (1-104)||(31953027-31953130)
chr6 (1-110)||(31109397-31109506)
chr6 (1-100)||(28536485-28536582)
chr6 (1-105)||(31110758-31110860)
chr6 (1-105)||(6209462-6209566)
chr6 (1-105)||(15832576-15832680)
chr6 (1-105)||(15990039-15990143)
chr6 (1-105)||(30341357-30341461)
chr6 (1-104)||(15508021-15508124)
chr6 (1-110)||(4231542-4231651)
chr6 (25-105)||(12732481-12732561)
chr6 (1-110)||(29857821-29857930)
chr6 (1-101)||(23128124-23128224)
chr6 (25-99)||(9379733-9379807)
chr6 (70-106)||(22422084-22422120)
chr6 (181-213)||(32659867-32659899)
chr6 (38-103)||(946377-946442)
[»] chr1 (32 HSPs)
chr1 (1-104)||(9474873-9474976)
chr1 (4-105)||(2581914-2582015)
chr1 (1-110)||(48716279-48716388)
chr1 (1-105)||(32813246-32813350)
chr1 (4-108)||(51898683-51898787)
chr1 (1-104)||(27564732-27564835)
chr1 (1-107)||(50630455-50630561)
chr1 (1-105)||(8346385-8346489)
chr1 (1-105)||(38632318-38632422)
chr1 (1-104)||(3000319-3000422)
chr1 (1-105)||(23597088-23597192)
chr1 (1-105)||(38595153-38595257)
chr1 (1-101)||(44548373-44548473)
chr1 (1-104)||(43132-43235)
chr1 (1-104)||(47452317-47452420)
chr1 (1-106)||(41758803-41758908)
chr1 (1-101)||(26274435-26274535)
chr1 (4-103)||(11152378-11152476)
chr1 (5-104)||(37649198-37649297)
chr1 (1-105)||(49811524-49811628)
chr1 (1-104)||(50590997-50591100)
chr1 (1-106)||(37926435-37926540)
chr1 (1-110)||(41608490-41608599)
chr1 (4-104)||(3302533-3302633)
chr1 (1-105)||(5958997-5959101)
chr1 (1-97)||(26440741-26440837)
chr1 (1-110)||(45044557-45044666)
chr1 (4-104)||(6260870-6260970)
chr1 (1-104)||(47748443-47748545)
chr1 (1-99)||(44453984-44454082)
chr1 (1-74)||(44332368-44332441)
chr1 (4-61)||(48489343-48489400)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1-105)||(10106-10210)
[»] scaffold1268 (1 HSPs)
scaffold1268 (1-104)||(926-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (1-104)||(926-1029)
[»] scaffold0237 (1 HSPs)
scaffold0237 (1-110)||(4023-4132)
[»] scaffold0316 (1 HSPs)
scaffold0316 (1-81)||(17077-17157)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-84)||(152518-152601)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 105 - 326
Target Start/End: Complemental strand, 41330053 - 41329832
Alignment:
Q  105 taaaaatacatcaacccaatatttttaatcctctggtttttggaagaaatgatttttgtactgtcaaactcaacaagaagtaagtaaaatttaatcaata 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | |||||    
T  41330053 taaaaatacatcaacccaatatttttaatcctctggtttttggaagaaatgatttttgtactgtcaaattcaacaagaagtaagtaaagtttgaccaata 41329954  T
Q  205 attattttaattaagattccaattcaggttcttccatatcatttacccattttttatttattttgagaggatccatattgtataagaaaaagtgttatta 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41329953 attattttaattaagattccaattcaggttcttccatatcatttacccattttttatttattttgagaggatccatattgtataagaaaaagtgttatta 41329854  T
Q  305 aatctcttaacaagttcatatc 326  Q
    ||||||||| ||||||||||||    
T  41329853 aatctcttatcaagttcatatc 41329832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 417 - 646
Target Start/End: Complemental strand, 41329760 - 41329531
Alignment:
Q  417 gagggaaatgtcacgtgacttcttgttattttcatccggcttttattccgttgtctcttagttaatttagcttattgtccaggctattctttcattttga 516  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41329760 gagggaaatgtcacgtgatttcttgttattttcatccggcttttattccgttgtctcttagttaatttagcttattgtccaggctattctttcattttga 41329661  T
Q  517 acttaatcaaccaaatcagatgtcaaannnnnnnatagagtttattattccatcctaatttgtttctcatacgtccttcactttttccattttacccatg 616  Q
    |||||||||||||||||||||||  ||       ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41329660 acttaatcaaccaaatcagatgttgaatttttttatagaatttattattccatcctaatttgtttctcatacgtccttcactttttccattttacccatg 41329561  T
Q  617 tttgaattatataaccaaacatttttctac 646  Q
    ||||||||||||||||||||||||||||||    
T  41329560 tttgaattatataaccaaacatttttctac 41329531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 40423940 - 40424051
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| ||||||||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||||| | |||||||||||||    
T  40423940 aagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtatctatgtatcatt 40424039  T
Q  101 actctaaaaata 112  Q
    |||| |||||||    
T  40424040 actcaaaaaata 40424051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 5957933 - 5957831
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||||||||||||||| || ||||| |||| ||||||||||||||| ||||| ||||||||| | |||||||||||||| ||||||||||||||||    
T  5957933 aagagaaagtgtgattgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtatcatt 5957834  T
Q  101 act 103  Q
    |||    
T  5957833 act 5957831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 12831150 - 12831047
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| ||||||||| | ||||| ||||||||| |||||||||||||||    
T  12831150 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcatt 12831051  T
Q  101 actc 104  Q
    ||||    
T  12831050 actc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 15197436 - 15197333
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| ||||||||| | ||||||||||||||  |||||||||||||||    
T  15197436 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcatt 15197337  T
Q  101 actc 104  Q
    ||||    
T  15197336 actc 15197333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 37038579 - 37038477
Alignment:
Q  4 agaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattact 103  Q
    |||||||||| |||||| || ||||| |||| ||||||||||||||| ||||| ||||||||| | ||||||||||||| ||||||||||||||||||||    
T  37038579 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattact 37038480  T
Q  104 cta 106  Q
    |||    
T  37038479 cta 37038477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 4854860 - 4854964
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| ||||||||||||||  || |||| | |||||||||||||| | ||| ||||| | |||||||||||||||||||||||||||||||    
T  4854860 aagagaaagtgtgcttgtgcagggtccatgtggccacatatcagatttttatgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcatt 4854959  T
Q  101 actct 105  Q
    |||||    
T  4854960 actct 4854964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 14548025 - 14547921
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| ||||||| | | ||||||||||||||| |||||||||||| ||    
T  14548025 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtatcttt 14547926  T
Q  101 actct 105  Q
    |||||    
T  14547925 actct 14547921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 504118 - 504221
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||| ||||| |||||| |||||||| |||| ||||||||||||||| ||||| ||||||| | | ||||||||||||||| |||||||||||||||    
T  504118 aagagaatgtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatt 504217  T
Q  101 actc 104  Q
    ||||    
T  504218 actc 504221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 1179937 - 1180040
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |  |||||||||| ||||||||||||||| ||||| ||||||||| | |||| |||||||||| |||||||||||||||    
T  1179937 aagagaaagtgtgcttgtgcggaatccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatt 1180036  T
Q  101 actc 104  Q
    ||||    
T  1180037 actc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 15258926 - 15259037
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||||| | |||| |||||||| |||||  | ||||||||||||     
T  15258926 aagagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagatttttatgtggatgtccagggatgtattgccatctaagagtatctatgtatcata 15259025  T
Q  101 actctaaaaata 112  Q
    ||||| ||||||    
T  15259026 actcttaaaata 15259037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 15048179 - 15048281
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||  || | ||||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||||||||||     
T  15048179 aagagaaagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgg-tgtcaaagggtgtattgccacctaaggatgtctatgtatcata 15048277  T
Q  101 actc 104  Q
    ||||    
T  15048278 actc 15048281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 23122594 - 23122697
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| || ||| |||||||| |||| ||||||||||||||| ||||| ||||||| | | ||||||||| ||||| |||||||||||||||    
T  23122594 aagagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcatt 23122693  T
Q  101 actc 104  Q
    ||||    
T  23122694 actc 23122697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 34012293 - 34012396
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| || ||||| |||| |||||||| |||||| ||||| ||||||||| | |||| |||||||||| |||||||||||||||    
T  34012293 aagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatt 34012392  T
Q  101 actc 104  Q
    ||||    
T  34012393 actc 34012396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 32032827 - 32032723
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  ||||||||| |||| ||| |||| |||||||||||| |||||||||| |||||| ||||||||||||||| ||| ||||||||||     
T  32032827 aagagaaagtgtacttgtgcaggatccatatggccacatgtcagatttttgtgtggatgtc-aaggatgtattgccacctaagggtgtttatgtatcata 32032729  T
Q  101 actcta 106  Q
    ||||||    
T  32032728 actcta 32032723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 24307790 - 24307901
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| ||||||| ||| |||| | |||||||||| ||||| |||||| |||| ||||||||||||||| ||| ||||||||||     
T  24307790 aagagaaagtgtacttgtgcggggtccatatggccacatatcagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgtttatgtatcata 24307889  T
Q  101 actctaaaaata 112  Q
    ||||| ||||||    
T  24307890 actcttaaaata 24307901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 30479471 - 30479574
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  ||||||  |||||| ||  |||| |||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||||||||     
T  30479471 aagagaaagtgtacttgtgcgaggtccatatagccacatgtcagatttttatgtggatgtcaaagggtgtattgccacctaagggtgtttatgtatcata 30479570  T
Q  101 actc 104  Q
    ||||    
T  30479571 actc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 43414578 - 43414681
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| || ||||  ||||||||||| |||||||| ||||| ||||||||| | | |||||| |||||||||||||||||||||     
T  43414578 aagagaaagtgtgcttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcata 43414677  T
Q  101 actc 104  Q
    ||||    
T  43414678 actc 43414681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 20074964 - 20075034
Alignment:
Q  34 ccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattactc 104  Q
    |||||||||| |||||||||||| ||||||||  | |||||||||||||||||||||||||||||||||||    
T  20074964 ccacgtgtcacatttttatgtgggtgtcaaagagtgtattgccacctaaggatgtctatgtatcattactc 20075034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 44507084 - 44507189
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||||| || |||| | |||||||| |||| ||||||||||||||| ||||| ||| ||||  | |||| |||||||||| |||||||||||||||    
T  44507084 aagagaaagtatgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaagggtgtctatgtatcatt 44507183  T
Q  101 actcta 106  Q
    ||||||    
T  44507184 actcta 44507189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 10284628 - 10284732
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| |||||||| |||||| ||||| ||||||||  | ||||| ||| ||||| ||||||||||||||     
T  10284628 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagagtgtattgtcacttaagggtgtctatgtatcata 10284727  T
Q  101 actct 105  Q
    |||||    
T  10284728 actct 10284732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 16056398 - 16056502
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| ||||||| ||| |||| |||||||||||| ||||| |||||| |||| ||||| ||| ||||||||| ||||||||||     
T  16056398 aagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataaggatgtttatgtatcata 16056497  T
Q  101 actct 105  Q
    |||||    
T  16056498 actct 16056502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 16383480 - 16383376
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| ||||||| ||| |||| |||||||||||| ||||| |||||| || | ||||||||||||||| ||| ||||||||||     
T  16383480 aagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcata 16383381  T
Q  101 actct 105  Q
    |||||    
T  16383380 actct 16383376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 10621084 - 10621182
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcat 99  Q
    ||||||||||||| |||||| || || |  || | ||||||||||||||| ||||| ||||||||| | |||| |||||||||||||||||||||||||    
T  10621084 aagagaaagtgtgcttgtgcgggatcgatgtggctacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcat 10621182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 34307319 - 34307215
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| |||| || ||| |||| |||||||||||| ||||| |||||| || | ||||||||||||||| ||| ||||||||||     
T  34307319 aagagaaagtgtacttgtgcggggttcatatgtccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcata 34307220  T
Q  101 actct 105  Q
    |||||    
T  34307219 actct 34307215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 42221618 - 42221514
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| ||||   ||||||| ||||  ||||||||||||||| ||||| |||| | | || ||||| ||||||||||||| |||||||||||    
T  42221618 aagagaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggtgtccaggaatgtattgtcacctaaggatgtatatgtatcatt 42221519  T
Q  101 actct 105  Q
    |||||    
T  42221518 actct 42221514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 8841429 - 8841512
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaagg 84  Q
    ||||||||||||| |||||| |||||||| |||| |||||| |||||||| ||||| ||||||||| | || ||||||||||||    
T  8841429 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagg 8841512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 24307710 - 24307628
Alignment:
Q  23 ggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattactct 105  Q
    |||||| ||| |||| | |||||||||| ||||| |||||| |||| ||||||||||||||| ||| |||||||||| |||||    
T  24307710 ggtccatatggccacatatcagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactct 24307628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 9122288 - 9122190
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| || ||||| |||| || |||||||||||| ||||| |||          |||||||||||||| |||||||||||||||    
T  9122288 aagagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgt----------attgccacctaagggtgtctatgtatcatt 9122199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 14055610 - 14055692
Alignment:
Q  22 gggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattactc 104  Q
    |||||||| |||| || ||| |||||||| |||||||||||| |  | ||||| ||||||||| |||| ||||||||| ||||    
T  14055610 gggtccacgtgactacatgtaagatttttgtgtggatgtcaaggagtgtattgtcacctaagggtgtcaatgtatcataactc 14055692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 11511459 - 11511569
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||||    
T  11511459 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatt 11511558  T
Q  101 actctaaaaat 111  Q
    |||| ||||||    
T  11511559 actcaaaaaat 11511569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 50052425 - 50052529
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| ||||||||| | |||||||||||||||||||||||||||||||    
T  50052425 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcatt 50052524  T
Q  101 actct 105  Q
    |||||    
T  50052525 actct 50052529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 41236450 - 41236347
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||||||||||| | | ||||||||||||||| |||||||||||||||    
T  41236450 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcatt 41236351  T
Q  101 actc 104  Q
    ||||    
T  41236350 actc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 42044364 - 42044468
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| |||  |||||| ||||||||||||||| |||||||||||||||    
T  42044364 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcatt 42044463  T
Q  101 actct 105  Q
    |||||    
T  42044464 actct 42044468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 48183046 - 48183150
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| ||||||||| | ||||||||| ||||| |||||||||||||||    
T  48183046 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcatt 48183145  T
Q  101 actct 105  Q
    |||||    
T  48183146 actct 48183150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 480444 - 480548
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||| | |||||||| |||| ||||||||||||||| ||||| ||||||||| | ||||| ||||||||| |||||||||||||||    
T  480444 aagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcatt 480543  T
Q  101 actct 105  Q
    |||||    
T  480544 actct 480548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 29239989 - 29239885
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||  |||||||| |||| |||||| |||||||| ||||||||||||| | | ||||||||||||||| |||||||||||||||    
T  29239989 aagagaaagtgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcatt 29239890  T
Q  101 actct 105  Q
    |||||    
T  29239889 actct 29239885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 6034147 - 6034044
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| || ||||| |||| || |||||||||||| ||||| ||||||||| | ||||||||||||||| |||||||||||||||    
T  6034147 aagagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatt 6034048  T
Q  101 actc 104  Q
    ||||    
T  6034047 actc 6034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 47986311 - 47986206
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| ||||||| ||| |||| |||||||||||| |||||||||||| |||| ||||||||||||||| ||| ||||||||||     
T  47986311 aagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtatcata 47986212  T
Q  101 actcta 106  Q
    ||||||    
T  47986211 actcta 47986206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 50526171 - 50526271
Alignment:
Q  4 agaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattact 103  Q
    |||||| ||| |||||| |  ||||| |||||||||||||||||||| ||||| ||||||||| | ||||||||||||| ||||||||||||||||||||    
T  50526171 agaaagcgtgcttgtgcggaatccacgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattact 50526270  T
Q  104 c 104  Q
    |    
T  50526271 c 50526271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 55475294 - 55475190
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  || ||||||||||| ||| |||| |||||||||||| ||||| ||||||||| | ||||||||||||||||||| ||||||||||     
T  55475294 aagagaaagtgtacttatgcagggtccatatggccacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcata 55475195  T
Q  101 actct 105  Q
    |||||    
T  55475194 actct 55475190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 29234242 - 29234348
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||  | | ||||||| | |||||||| |||||| |||||||||||||||    
T  29234242 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgaaggtatcaaagggtgtattgccatctaagggtgtctatgtatcatt 29234341  T
Q  101 actctaa 107  Q
    |||||||    
T  29234342 actctaa 29234348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 8343160 - 8343269
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||||| |  || ||| ||||||| ||| |||| |||||||||||||||| | ||||||||||| ||||||||||||||||||| ||||||||||     
T  8343160 aagagaaagtatacttatgcggggtccatatggccacatgtcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgtttatgtatcata 8343259  T
Q  101 actctaaaaa 110  Q
    |||| |||||    
T  8343260 actcgaaaaa 8343269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 24995104 - 24995208
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||| |||| |||||| |||||||| |||| |||||||| |||||||||||| ||||||||| | |||||||| |||||| |||| || |||||||    
T  24995104 aagagaaaatgtgcttgtgcggggtccacgtgactacgtgtcaaatttttatgtgggtgtcaaagggtgtattgccatctaagggtgtccatatatcatt 24995203  T
Q  101 actct 105  Q
    |||||    
T  24995204 actct 24995208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 3481757 - 3481654
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||  |||||||| |||| | ||||||||||||| ||||| ||||||||  | ||||||||||||| | |||||||||||||||    
T  3481757 aagagaaagtgtgcttgtgtggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatcatt 3481658  T
Q  101 actc 104  Q
    ||||    
T  3481657 actc 3481654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 54473530 - 54473633
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||| |||||||| |||||| |||||||| |||| |||||| |||||||| ||||| ||||||| | | ||||| ||||||||| |||||||||||||||    
T  54473530 aagataaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcatt 54473629  T
Q  101 actc 104  Q
    ||||    
T  54473630 actc 54473633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 31910295 - 31910192
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||  || | | ||||||||||||| ||||| ||||||||  | ||||| ||||||||||||||||||||||||     
T  31910295 aagagaaagtgtgcttgtgcggggtccatgtggctatgtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcata 31910196  T
Q  101 actc 104  Q
    ||||    
T  31910195 actc 31910192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 19670713 - 19670817
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| ||||||| ||| |||| |||||||||||| ||||  |||||| || | ||||||||||||||| ||| ||||||||||     
T  19670713 aagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcata 19670812  T
Q  101 actct 105  Q
    |||||    
T  19670813 actct 19670817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 29547980 - 29548060
Alignment:
Q  25 tccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattactct 105  Q
    |||| ||| |||| |||||||||||| ||||| |||||| |||| ||||||||||||||||||| |||||||||| |||||    
T  29547980 tccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactct 29548060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 29977988 - 29977884
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||  ||||||| ||||| ||||||||||||||| ||||| ||| || || | |||||||||||| || | | |||||||||||    
T  29977988 aagagaaagtgtgcttgtgtggggtccatatgactacgtgtcagatttttgtgtgggtgttaaggggtgtattgccacctatggttctgtatgtatcatt 29977889  T
Q  101 actct 105  Q
    |||||    
T  29977888 actct 29977884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 32767061 - 32766957
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||||||||||| ||| |||| |||||||||||| | ||| |||||| || | ||||||||||||||  ||| ||||||||||     
T  32767061 aagagaaagtgtacttgtgcagggtccatatggccacatgtcagatttttgtatgggtgtcaaggggtgtattgccacctaagagtgtttatgtatcata 32766962  T
Q  101 actct 105  Q
    |||||    
T  32766961 actct 32766957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 40574846 - 40574779
Alignment:
Q  37 cgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattactc 104  Q
    |||||||||||||| ||||| ||||||||| | |||| ||||||||||||||||||||||||| ||||    
T  40574846 cgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataactc 40574779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 50813889 - 50813994
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| |||| || |||||||| |||||||||||| ||||| |||||| || | |||| |||||||||  ||| ||||||||||     
T  50813889 aagagaaagtgtacttgtgcggggttcatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgtttatgtatcata 50813988  T
Q  101 actcta 106  Q
    ||||||    
T  50813989 actcta 50813994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 23608338 - 23608234
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||  | || ||| |||| ||||||||||||||| ||||| ||||||| | | ||||| || |||||| ||||||| |||||||    
T  23608338 aagagaaagtgtgcttgtgtggagttcacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgtcatctaagggtgtctatatatcatt 23608239  T
Q  101 actct 105  Q
    |||||    
T  23608238 actct 23608234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 17983740 - 17983823
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaagg 84  Q
    ||||||||||||  |||||| ||||||| ||| |||| |||||||||||| ||||| |||||| || | |||||||||||||||    
T  17983740 aagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagg 17983823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 56300162 - 56300225
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaa 64  Q
    ||||||||||||| ||||||||| | || |||||||| |||||||||||| |||||||||||||    
T  56300162 aagagaaagtgtgtttgtgcaggattcatatgaccacatgtcagatttttgtgtggatgtcaaa 56300225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 53352563 - 53352660
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcat 99  Q
    |||||||||| || |||||| |||||||| | || ||||||||||||||| ||| | ||| |||| || ||||| ||||||||| ||||||||||||||    
T  53352563 aagagaaagtatgcttgtgcggggtccacttaactacgtgtcagatttttgtgtaggtgttaaagaatgtattg-cacctaagggtgtctatgtatcat 53352660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 41823985 - 41823916
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatat 70  Q
    ||||||||||||| |||||| |||||||  |||| ||||||||||||||| ||||| ||| |||||||||    
T  41823985 aagagaaagtgtgcttgtgcggggtccatgtgactacgtgtcagatttttgtgtgggtgttaaaggatat 41823916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 48647723 - 48647827
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||| |||| |||||| | |||||| ||||||||||| |||||||||||||| ||| ||  | | |||||  |||||||||||| ||||| ||||     
T  48647723 aagagaaattgtgcttgtgcggagtccacgtgaccacgtgttagatttttatgtgggtgttaagaggtgtattgttacctaaggatgtttatgtgtcata 48647822  T
Q  101 actct 105  Q
    |||||    
T  48647823 actct 48647827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 44536743 - 44536849
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  || ||  ||||| | |||||||| |||||||||||| |||||||||| |||| | |||||||||||||   ||| ||||||||||     
T  44536743 aagagaaagtgtacttatgtggggtctatatgaccacatgtcagatttttgtgtggatgtc-aagggtgtattgccacctaaaagtgtttatgtatcata 44536841  T
Q  101 actctaaa 108  Q
    ||||||||    
T  44536842 actctaaa 44536849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 47104647 - 47104543
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||  ||||| | |  ||||||||||| |||||| ||||| ||||| ||  | ||||| || ||||| |||||||| |||||||    
T  47104647 aagagaaagtgtgtttgtgtggggtcaataaaaccacgtgtcaaatttttgtgtgggtgtcagagagtgtattgtcatctaagaatgtctatatatcatt 47104548  T
Q  101 actct 105  Q
    |||||    
T  47104547 actct 47104543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 28480267 - 28480370
Alignment:
Q  3 gagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattac 102  Q
    ||||||||||| |||||  ||||||||||||| || |||||||||||| ||||  ||| ||    | ||||| ||||||||| ||||||||||| || ||    
T  28480267 gagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtattataac 28480366  T
Q  103 tcta 106  Q
    ||||    
T  28480367 tcta 28480370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 28481142 - 28481245
Alignment:
Q  3 gagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattac 102  Q
    ||||||||||| |||||  ||||||||||||| || |||||||||||| ||||  ||| ||    | ||||| ||||||||| ||||||||||| || ||    
T  28481142 gagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtattataac 28481241  T
Q  103 tcta 106  Q
    ||||    
T  28481242 tcta 28481245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 28482017 - 28482120
Alignment:
Q  3 gagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattac 102  Q
    ||||||||||| |||||  ||||||||||||| || |||||||||||| ||||  ||| ||    | ||||| ||||||||| ||||||||||| || ||    
T  28482017 gagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtattataac 28482116  T
Q  103 tcta 106  Q
    ||||    
T  28482117 tcta 28482120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 55079732 - 55079814
Alignment:
Q  22 gggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattactc 104  Q
    ||||||| ||| |||| |||||||||||| | ||| ||||||  | | ||||||||||||||| ||| |||||||||| ||||    
T  55079732 gggtccatatggccacatgtcagatttttgtatgggtgtcaagaggtgtattgccacctaagggtgtttatgtatcataactc 55079814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 9058583 - 9058479
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| ||||||||||||| ||||||||||||||| ||||| ||||||||| | ||||||||||||||| |||||||||||||||    
T  9058583 aagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatt 9058484  T
Q  101 actct 105  Q
    |||||    
T  9058483 actct 9058479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 19930817 - 19930917
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| ||||||||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||||| |||||||||||||||    
T  19930817 aagagaaagtgtgtttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcatt 19930916  T
Q  101 a 101  Q
    |    
T  19930917 a 19930917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 13438446 - 13438343
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| ||||||||||| ||||| ||||||||| |||||||||||||||    
T  13438446 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcatt 13438347  T
Q  101 actc 104  Q
    ||||    
T  13438346 actc 13438343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 5574485 - 5574590
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| || ||||| |||| ||||||||||||||||||||| ||||||||| | ||||||||||||||  |||||||||||||||    
T  5574485 aagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcatt 5574584  T
Q  101 actcta 106  Q
    ||||||    
T  5574585 actcta 5574590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 28863558 - 28863453
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| ||||||||| | ||||||||||||||| |||||||||||||||    
T  28863558 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatt 28863459  T
Q  101 actcta 106  Q
    | ||||    
T  28863458 attcta 28863453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 33436314 - 33436209
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||||  |||||||||  |||||||||||||||||||||| ||||||| | | |||||||| ||||||||||||||||||||||    
T  33436314 aagagaaagtgtgcttgtgcaaagtccacatggtcacgtgtcagatttttatgtgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcatt 33436215  T
Q  101 actcta 106  Q
    ||||||    
T  33436214 actcta 33436209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 30915566 - 30915462
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||| | |||||||| |||| |||||||||||||||||||||  |||||||| | ||||||||||||||| |||||||||||||||    
T  30915566 aagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcatt 30915467  T
Q  101 actct 105  Q
    |||||    
T  30915466 actct 30915462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 33436097 - 33436201
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| |||||| |||||||| ||||| ||||||||| | ||||||||||||||| |||||||||||||||    
T  33436097 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatt 33436196  T
Q  101 actct 105  Q
    |||||    
T  33436197 actct 33436201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 42257296 - 42257192
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||  || ||||||||||||||||||||||| ||||||| ||| ||||||||||||| ||||||||||||||||     
T  42257296 aagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaaagatgtctatgtatcata 42257197  T
Q  101 actct 105  Q
    |||||    
T  42257196 actct 42257192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 7465732 - 7465839
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||  |||||||| |||| ||||||||||||||| ||||| ||||||||| | |||||||| |||||| |||||||||||||||    
T  7465732 aagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcatt 7465831  T
Q  101 actctaaa 108  Q
    ||||||||    
T  7465832 actctaaa 7465839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 40613899 - 40614002
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||  || ||||||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||||||||||     
T  40613899 aagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcata 40613998  T
Q  101 actc 104  Q
    ||||    
T  40613999 actc 40614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 40701581 - 40701478
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||||||||||||||| |||||||| | || ||||||||||||||| ||||| ||||||| | | ||||||||||||||| |||||||||||||||    
T  40701581 aagagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatt 40701482  T
Q  101 actc 104  Q
    ||||    
T  40701481 actc 40701478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 10249379 - 10249483
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| ||||||| | | ||||| ||||||||| |||||||||||||||    
T  10249379 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcatt 10249478  T
Q  101 actct 105  Q
    |||||    
T  10249479 actct 10249483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 17473123 - 17473020
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| || ||||| |||| ||||||||||||||| ||||| ||||||||| | |||||||| |||||| |||||||||||||||    
T  17473123 aagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcatt 17473024  T
Q  101 actc 104  Q
    ||||    
T  17473023 actc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 27864807 - 27864704
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| || ||| |||||||| |||  ||||||||||||||| ||||||||||||||| | ||||||||| ||||| |||||||||||||||    
T  27864807 aagagaaagtgtgcttttgcggggtccacgtgattacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatcatt 27864708  T
Q  101 actc 104  Q
    ||||    
T  27864707 actc 27864704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 32505648 - 32505750
Alignment:
Q  4 agaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattact 103  Q
    |||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| ||||||| | | ||||| ||||||||| ||||||||||||||||||    
T  32505648 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattact 32505747  T
Q  104 cta 106  Q
    |||    
T  32505748 cta 32505750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 20700918 - 20700814
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| || ||| |||||||| |||| ||||||||||||||| ||| |  |||||||| | ||||||||| |||||||||||||||||||||    
T  20700918 aagagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatgtatcatt 20700819  T
Q  101 actct 105  Q
    |||||    
T  20700818 actct 20700814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 41575241 - 41575133
Alignment:
Q  1 aagagaaagtgtgattgtgcaggg-tccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcat 99  Q
    ||||||||||||| ||||| |||| ||||||||||||| ||||| |||||| |||| |||||||||| | |||| ||| |||||||||||||||||||||    
T  41575241 aagagaaagtgtgcttgtgtaggggtccacatgaccacatgtcaaatttttgtgtgaatgtcaaagggtgtattaccatctaaggatgtctatgtatcat 41575142  T
Q  100 tactctaaa 108  Q
    |||| ||||    
T  41575141 tactttaaa 41575133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 38882832 - 38882914
Alignment:
Q  22 gggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattactct 105  Q
    |||||||| |||| ||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||    
T  38882832 gggtccacgtgactacgtgtcagatttttgtgtggatgtcaaagggt-tattgccacctaagggtgtctatgtatcattactct 38882914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 28381652 - 28381764
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| | |||||  |||| ||||||||||||||| ||||| |||| || | | ||||||||||||||| |||||||||||||||    
T  28381652 aagagaaagtgtgcttgtgcggagtccatgtgactacgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcatt 28381751  T
Q  101 actc-taaaaata 112  Q
    |||| ||||||||    
T  28381752 actcataaaaata 28381764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 45097732 - 45097836
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| ||||||| ||| |||| |||||||||||| | ||| |||||| |||| ||||||||||||||||||| ||||||||||     
T  45097732 aagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcata 45097831  T
Q  101 actct 105  Q
    |||||    
T  45097832 actct 45097836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 2533226 - 2533120
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||| |||||||| |||||| ||||| |  || | ||||||||||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||||||     
T  2533226 aagaaaaagtgtgcttgtgcggggtctatgtggctacgtgtcagatttttgtgtgg-tgtcaaaggatgtattgccacttaaggatgtctatgtatcata 2533128  T
Q  101 actctaaa 108  Q
    ||||||||    
T  2533127 actctaaa 2533120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 4060785 - 4060685
Alignment:
Q  4 agaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattact 103  Q
    |||||||||| || ||| || ||||| | || ||||||||||||||| ||||||||||||| | | ||||| ||||||||| ||||||||||||||||||    
T  4060785 agaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattact 4060686  T
Q  104 c 104  Q
    |    
T  4060685 c 4060685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 38732457 - 38732354
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| ||||||| |||||||| |||||||||||| ||||| |||||| |||| ||||| ||| ||||| ||| ||||||||||     
T  38732457 aagagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataagggtgtttatgtatcata 38732358  T
Q  101 actc 104  Q
    ||||    
T  38732357 actc 38732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 36168939 - 36168834
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||||| || |||||| |||||||  || |||||||||| |||||| |||||  || ||||||| ||||| || |||||||||||||||||||||     
T  36168939 aagagaaagtatgcttgtgcggggtccatgtggccacgtgtcaaatttttgtgtgggagttaaaggatgtattgtcatctaaggatgtctatgtatcata 36168840  T
Q  101 actcta 106  Q
    ||||||    
T  36168839 actcta 36168834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 38273139 - 38273243
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| | |||| |||||||  || | ||||||||||||||| ||||| ||| ||||| | |||||||| ||||| |||||||||||||||     
T  38273139 aagagaaagtgtgctagtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcata 38273238  T
Q  101 actct 105  Q
    |||||    
T  38273239 actct 38273243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 26891501 - 26891605
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||| |||| |||| |  ||||||| ||||||| |||||||||||| ||||| |||| | || | ||||||||||||||| || |||||||||||     
T  26891501 aagagaaaatgtgcttgttcgaggtccacgtgaccacatgtcagatttttgtgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcata 26891600  T
Q  101 actct 105  Q
    |||||    
T  26891601 actct 26891605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 2997484 - 2997567
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaagg 84  Q
    ||||||||||||  |||||| ||||||| ||| |||| |||||||||||| ||||| |||||| || | |||||||||||||||    
T  2997484 aagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagg 2997567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 17820001 - 17820104
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||| |||| |||||  |||||||| | ||||| |||||||||||| ||||| |||||| || | ||||||||||||  | ||||||||||||||     
T  17820001 aagagaaaatgtgtttgtgtggggtccacgtaaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctatagttgtctatgtatcata 17820100  T
Q  101 actc 104  Q
    ||||    
T  17820101 actc 17820104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 43490224 - 43490121
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||| |||||||  |||||| ||||||| ||| |||| |||||||||||| ||||| |||||| || | ||||| ||||||||| ||| ||||||||||     
T  43490224 aagataaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcata 43490125  T
Q  101 actc 104  Q
    ||||    
T  43490124 actc 43490121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 17823852 - 17823778
Alignment:
Q  36 acgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattactctaaaaa 110  Q
    ||||||||||||||| ||||| |||  | | || ||||||||||||||||||| |||||||||||||||| ||||    
T  17823852 acgtgtcagatttttgtgtgggtgttcaggaatgtattgccacctaaggatgtatatgtatcattactcttaaaa 17823778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 13365456 - 13365373
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaagg 84  Q
    ||||||||||||  |||||| ||||||| |||  ||| |||||||||||| ||||| |||||| || |||||||||| ||||||    
T  13365456 aagagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtatattgccatctaagg 13365373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 3738043 - 3737986
Alignment:
Q  4 agaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtc 61  Q
    ||||| |||| |||||| |||||||||||||||| |||||||||||| ||||| ||||    
T  3738043 agaaaatgtgcttgtgcggggtccacatgaccacatgtcagatttttgtgtgggtgtc 3737986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 580 - 630
Target Start/End: Original strand, 30329001 - 30329051
Alignment:
Q  580 ttctcatacgtccttcactttttccattttacccatgtttgaattatataa 630  Q
    ||||| |||||||| || |||||| |||||| |||||||||||||||||||    
T  30329001 ttctcgtacgtcctccattttttcaattttatccatgtttgaattatataa 30329051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 3440082 - 3439985
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatca 98  Q
    |||||||| |||| |||||| |||||||| | | ||| ||| |||||||| ||||| |||| | |  | ||||||||||||||| |||||| ||||||    
T  3440082 aagagaaaatgtgcttgtgcggggtccacgtaatcacatgttagatttttgtgtgggtgtccaggagtgtattgccacctaagggtgtctacgtatca 3439985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 36361910 - 36362021
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||  |||||||| |||| ||||||||||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||    
T  36361910 aagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcatt 36362009  T
Q  101 actctaaaaata 112  Q
    |||||| |||||    
T  36362010 actctataaata 36362021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 8080380 - 8080484
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||||||| | ||||||||| | ||||||||||||||| |||||||||||||||    
T  8080380 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatt 8080479  T
Q  101 actct 105  Q
    |||||    
T  8080480 actct 8080484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 7389492 - 7389381
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| ||||||||  | ||||||||||||||| |||||||||||||||    
T  7389492 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcatt 7389393  T
Q  101 actctaaaaata 112  Q
    ||||| ||||||    
T  7389392 actcttaaaata 7389381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 3434665 - 3434560
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| || ||||| |||| ||||||||| ||||| ||||| ||||||||| | |||||||||||||||||||||||||||||||    
T  3434665 aagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcatt 3434566  T
Q  101 actcta 106  Q
    ||||||    
T  3434565 actcta 3434560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 36362129 - 36362024
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||  |||||||| |||| ||||||||||||||| ||||| ||||||||||| |||| |||||||||| |||||||||||||||    
T  36362129 aagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcatt 36362030  T
Q  101 actcta 106  Q
    ||||||    
T  36362029 actcta 36362024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 35468852 - 35468956
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| ||||||||||||||||||  ||| | | |||||||||||||| ||||||| ||| |||||||| ||||||||||||||||||||||    
T  35468852 aagagaaagtgtgtttgtgcagggtccacatggtcacatattagatttttatgtgggtgtcaaatgatgtattgccatctaaggatgtctatgtatcatt 35468951  T
Q  101 actct 105  Q
    |||||    
T  35468952 actct 35468956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 19329945 - 19329842
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||  ||||||||||||||| ||||| ||||||| | | |||||||||||||||||||||||||||||||    
T  19329945 aagagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcatt 19329846  T
Q  101 actc 104  Q
    ||||    
T  19329845 actc 19329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 26296747 - 26296642
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||| || | |||||| ||||||| ||| |||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||     
T  26296747 aagagaaaatgcgcttgtgcggggtccatatggccacgtatcagatttttatgtggatgttaaagggtatattgtcacctaaggatgtctatgtatcata 26296648  T
Q  101 actcta 106  Q
    ||||||    
T  26296647 actcta 26296642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 3784098 - 3783998
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| || ||||| |||| ||||||||||||||| ||||| ||||||| ||| ||||||||||||||| |||||||||||||||    
T  3784098 aagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcatt 3783999  T
Q  101 a 101  Q
    |    
T  3783998 a 3783998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 38267143 - 38267035
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| ||||||||| | ||||| ||| ||||| |||||||||||||||    
T  38267143 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcatt 38267044  T
Q  101 actctaaaa 109  Q
    |||| ||||    
T  38267043 actcaaaaa 38267035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 35137636 - 35137533
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| |||||| |||||||| ||||| ||||||||| | ||||||||||||||| ||||||| |||||||    
T  35137636 aagagaaagtgtgtttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcatt 35137537  T
Q  101 actc 104  Q
    ||||    
T  35137536 actc 35137533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 19436184 - 19436288
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| || ||| || ||||| |||| ||||||||||||||| ||||| ||||||| | | ||||| |||||||||||||||||||||||||    
T  19436184 aagagaaagtgtgcttatgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcatt 19436283  T
Q  101 actct 105  Q
    |||||    
T  19436284 actct 19436288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 38837320 - 38837216
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||| | |||  |||| | ||||||||||||||| |||||||||||||||    
T  38837320 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcatt 38837221  T
Q  101 actct 105  Q
    |||||    
T  38837220 actct 38837216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 4999511 - 4999614
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| |||| |||||||||| ||||| ||||||| | | |||||||| |||||| |||||||||||||||    
T  4999511 aagagaaagtgtgtttgtgcggggtccacgtgactacgtatcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcatt 4999610  T
Q  101 actc 104  Q
    ||||    
T  4999611 actc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 32951490 - 32951592
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| |||||| |||||||| ||||||||| ||||||| ||||| || |||||  |||||||||||||||    
T  32951490 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtggatgttaaaggatgtattgtcatctaagagtgtctatgtatcatt 32951589  T
Q  101 act 103  Q
    |||    
T  32951590 act 32951592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 36208276 - 36208172
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||| |||| ||||||||||||||| ||||||| |||||| ||||| ||||| |||||| | || |||| |||||||||| ||||||||||||||     
T  36208276 aagagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagctttttgtgtgggtgtcaatgaatgtattaccacctaagggtgtctatgtatcata 36208177  T
Q  101 actct 105  Q
    |||||    
T  36208176 actct 36208172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 35522979 - 35522881
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcat 99  Q
    ||||||||||||| |||||| || |||| ||| ||||||||||||||||| ||||| ||| ||| | | ||||||||| ||||||||||||||||||||    
T  35522979 aagagaaagtgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcat 35522881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 38044300 - 38044196
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| ||||||| ||| | || |||||||||||| |||||||||||| || | ||||||||||||||| ||| ||||||||||     
T  38044300 aagagaaagtgtacttgtgcggggtccatatggctacatgtcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgtttatgtatcata 38044201  T
Q  101 actct 105  Q
    |||||    
T  38044200 actct 38044196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 40957810 - 40957706
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||| | || ||||| |||| ||||||||||||||| ||||| | ||||||  | ||||||||||||||  |||||||||||||||    
T  40957810 aagagaaagtgtgcttgtacgggatccacgtgactacgtgtcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtatcatt 40957711  T
Q  101 actct 105  Q
    |||||    
T  40957710 actct 40957706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 40846110 - 40846213
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| ||||||| || || || ||| |||||||| |||||||||||| || | ||||||||||||||||||| ||||||||||     
T  40846110 aagagaaagtgtatttgtgcggggtccatataactacatgttagatttttgtgtggatgtcaaggggtgtattgccacctaaggatgtttatgtatcata 40846209  T
Q  101 actc 104  Q
    ||||    
T  40846210 actc 40846213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 46033828 - 46033903
Alignment:
Q  31 tgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattactcta 106  Q
    |||||||||||||||||||||||||| ||| ||||| | |||||||||||||| || |||||||||||| ||||||    
T  46033828 tgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataactcta 46033903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 46374808 - 46374902
Alignment:
Q  10 tgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattactc 104  Q
    |||| |||||| |||||||  || ||||||||||||||||| ||||| ||| ||||| | | |||||||||||||||||||||||||||| ||||    
T  46374808 tgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 7728006 - 7727905
Alignment:
Q  4 agaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattact 103  Q
    |||||||||  |||||| ||||||| |||||||| ||||||||||||||||| |||||||  | | |||| |||||||||| ||| |||||||||| |||    
T  7728006 agaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttatgtgaatgtcaagaggtgtattaccacctaagggtgtttatgtatcataact 7727907  T
Q  104 ct 105  Q
    ||    
T  7727906 ct 7727905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 22343464 - 22343359
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| ||||||| |||  ||| |||||||||||| ||||| |||||| || | ||||||||||||||| ||| ||||||||||     
T  22343464 aagagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcata 22343365  T
Q  101 actcta 106  Q
    ||||||    
T  22343364 actcta 22343359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 41915844 - 41915739
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| ||||||| ||| |||| |||||||||||| ||| | |||||| || | ||||||||||||||| ||| ||||||||||     
T  41915844 aagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcata 41915745  T
Q  101 actcta 106  Q
    ||||||    
T  41915744 actcta 41915739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 3694470 - 3694370
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| || |||||||||| ||||||||||||||| ||||| ||| ||| | | ||||| ||||||||| ||| ||| |||||||    
T  3694470 aagagaaagtgtgcttgtgcgggatccacatgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgtcacctaagggtgtgtatatatcatt 3694371  T
Q  101 a 101  Q
    |    
T  3694370 a 3694370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 8238316 - 8238212
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccaccta-aggatgtctatgtatcat 99  Q
    ||||||||||||  |||||| ||||||| ||||| || |||||||||||| ||||| ||||||||| | |||||||||||| ||| ||| ||||||||||    
T  8238316 aagagaaagtgtacttgtgcggggtccatatgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctacagggtgtttatgtatcat 8238217  T
Q  100 tactc 104  Q
     ||||    
T  8238216 aactc 8238212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 32564423 - 32564531
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| ||||||| ||  |||| |||||||||||| ||||| |||||| || | |||||||||||||| |||| ||||||||||     
T  32564423 aagagaaagtgtatttgtgcggggtccatatagccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgtttatgtatcata 32564522  T
Q  101 actctaaaa 109  Q
    |||| ||||    
T  32564523 actcaaaaa 32564531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 11044234 - 11044187
Alignment:
Q  58 tgtcaaaggatatattgccacctaaggatgtctatgtatcattactct 105  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  11044234 tgtcaaaggatgtattgccacctaagggtgtctatgtatcattactct 11044187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 21234504 - 21234401
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||| |||| |||||| |||| ||  || | |||||||| |||||| ||||  ||||||||| | ||||| ||||||||||||||||||||||||     
T  21234504 aagagaaaatgtgcttgtgcggggtacatgtggctacgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcata 21234405  T
Q  101 actc 104  Q
    ||||    
T  21234404 actc 21234401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 12311007 - 12310904
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||| ||| |||| |||| |||| ||||| ||||||| |||||||||||| | ||||| || |  |||||||| |||||||||| ||||||||||||||     
T  12311007 aagataaaatgtgcttgttcaggatccacgtgaccacatgtcagatttttgtatggatatcca--gatatatttccacctaagggtgtctatgtatcata 12310910  T
Q  101 actcta 106  Q
    ||||||    
T  12310909 actcta 12310904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 45223110 - 45223041
Alignment:
Q  36 acgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattactct 105  Q
    ||||||||||||||| ||| |||||  ||| || ||||||||||||||||||| ||| ||||||||||||    
T  45223110 acgtgtcagatttttgtgtagatgttcaagaatgtattgccacctaaggatgtatatatatcattactct 45223041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 18207282 - 18207179
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||  |||| ||| || |||||||| |||||||| | ||| ||||||  | | ||||||||||||||| ||||||||||||||     
T  18207282 aagagaaagtgtgcttgtgtggggttcacgtg-ccacgtgttagatttttgtatgggtgtcaagaggtgtattgccacctaaggttgtctatgtatcata 18207184  T
Q  101 actct 105  Q
    |||||    
T  18207183 actct 18207179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 32045905 - 32045838
Alignment:
Q  36 acgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattact 103  Q
    ||||||||||||||||||||| |||| |   ||||||||||||||||| || | ||||||||||||||    
T  32045905 acgtgtcagatttttatgtgggtgtccagtaatatattgccacctaagaatatatatgtatcattact 32045838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 16374845 - 16374894
Alignment:
Q  25 tccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattg 74  Q
    ||||| |||||||||||||||||||| |||||||||||| |||| |||||    
T  16374845 tccacgtgaccacgtgtcagatttttgtgtggatgtcaagggatgtattg 16374894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 10343560 - 10343664
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||||||||  | ||||| ||||||   | || ||||||||||||| ||||| ||||||    | |||| |||||||||| |||||||||||||||    
T  10343560 aagagaaagtgtgcgtctgcagagtccacggaaacatgtgtcagatttttgtgtgggtgtcaagatgtgtatttccacctaagggtgtctatgtatcatt 10343659  T
Q  101 actct 105  Q
    |||||    
T  10343660 actct 10343664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 39255921 - 39256023
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||  | |||||| || ||||||||||||||||| | ||| | ||||  | | ||||||||||||||| ||||||||||||||     
T  39255921 aagagaaagtgttcttgtgtggagtccacgtg-ccacgtgtcagatttttgtatgggtatcaagtggtgtattgccacctaaggttgtctatgtatcata 39256019  T
Q  101 actc 104  Q
    ||||    
T  39256020 actc 39256023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 104
Target Start/End: Complemental strand, 31735918 - 31735884
Alignment:
Q  70 tattgccacctaaggatgtctatgtatcattactc 104  Q
    |||||||||||||||||||||||||||||| ||||    
T  31735918 tattgccacctaaggatgtctatgtatcataactc 31735884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 2740377 - 2740270
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| || ||||| |||| ||||||||||||||| ||||| ||||||||| | |||||||||||||||||||||||||||||||    
T  2740377 aagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcatt 2740278  T
Q  101 actctaaa 108  Q
    ||||||||    
T  2740277 actctaaa 2740270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 28177878 - 28177775
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||  |||||||||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||||||||||     
T  28177878 aagagaaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcata 28177779  T
Q  101 actc 104  Q
    ||||    
T  28177778 actc 28177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 40145510 - 40145407
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||||||| ||||| | ||||||||||||||| |||||||||||||||    
T  40145510 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcatt 40145411  T
Q  101 actc 104  Q
    ||||    
T  40145410 actc 40145407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 13811755 - 13811651
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| ||||||| ||| ||||||||||||||| |||||||||||| ||    
T  13811755 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcttt 13811656  T
Q  101 actct 105  Q
    |||||    
T  13811655 actct 13811651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 18520881 - 18520981
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| ||||||||| | ||||||||||||||| |||||||||||||||    
T  18520881 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatt 18520980  T
Q  101 a 101  Q
    |    
T  18520981 a 18520981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 6679801 - 6679692
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||| |||| |||||| |||||||  |||||||||||||||||||| ||||| ||||||| | | ||||||||||||| ||||||||||||||||     
T  6679801 aagagaaaatgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcata 6679702  T
Q  101 actctaaaaa 110  Q
    ||||||||||    
T  6679701 actctaaaaa 6679692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 14831914 - 14831814
Alignment:
Q  4 agaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattact 103  Q
    |||||||||| |||||| || ||||| |||| ||||||||||||||||||||| ||||||||| | ||||||||||||||  ||||||||||||||||||    
T  14831914 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattact 14831815  T
Q  104 c 104  Q
    |    
T  14831814 c 14831814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 36732939 - 36733043
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| | ||||||||||||| ||||| ||||||||| | |||||| |||||||| |||||||||||||||    
T  36732939 aagagaaagtgtgcttgtgcggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcatt 36733038  T
Q  101 actct 105  Q
    |||||    
T  36733039 actct 36733043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 35785302 - 35785199
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||||||||||||||| || ||||| | || ||||||||||||||| ||||| ||||||| | | ||||||||||||||| |||||||||||||||    
T  35785302 aagagaaagtgtgattgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatt 35785203  T
Q  101 actc 104  Q
    ||||    
T  35785202 actc 35785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 42414299 - 42414402
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||| |||||||| |||||| ||||||||||||| ||||||||||||||| ||||| ||||||||| | ||||||||||||  | |||||||||||||||    
T  42414299 aagataaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctactggtgtctatgtatcatt 42414398  T
Q  101 actc 104  Q
    ||||    
T  42414399 actc 42414402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 2252165 - 2252276
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| ||||||| ||| |||| |||||||||||| ||||| |||||| || | ||||||||||||||||||| ||||||||||     
T  2252165 aagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcata 2252264  T
Q  101 actctaaaaata 112  Q
    |||||| |||||    
T  2252265 actctataaata 2252276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 33149635 - 33149738
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| || ||||| |||| |||||||| |||||| ||||| ||||||||| | |||| |||||||||| |||||||||||||||    
T  33149635 aagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatt 33149734  T
Q  101 actc 104  Q
    ||||    
T  33149735 actc 33149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 33825321 - 33825424
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| ||||| | ||| ||||||| |||||||||||||||||||||| |||||| |  | |||||||||||||| ||||||||| ||||||    
T  33825321 aagagaaagtgtgcttgtgtaaggttcacatgaacacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagaatgtctatgcatcatt 33825420  T
Q  101 actc 104  Q
    ||||    
T  33825421 actc 33825424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 15409607 - 15409711
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||| |||||| |||||| |||||||  || | ||||||||||||||| ||||| |||||||| || ||||| ||||||||||||||||||||||||     
T  15409607 aagagagagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcata 15409706  T
Q  101 actct 105  Q
    |||||    
T  15409707 actct 15409711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 26720619 - 26720516
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| || ||||  || ||||||||||||||||| ||| | ||| ||||| | ||||||||||||||||||||||||||||||     
T  26720619 aagagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcata 26720520  T
Q  101 actc 104  Q
    ||||    
T  26720519 actc 26720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 26990368 - 26990265
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| || ||||  || ||||||||||||||||| ||| | ||| ||||| | ||||||||||||||||||||||||||||||     
T  26990368 aagagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcata 26990269  T
Q  101 actc 104  Q
    ||||    
T  26990268 actc 26990265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 35943889 - 35943992
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||  || ||||| | || ||||||||||||||| ||||| ||||||| ||| ||||||||||||||| ||||||||||||||     
T  35943889 aagagaaagtgtgcttgtgtgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcata 35943988  T
Q  101 actc 104  Q
    ||||    
T  35943989 actc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 16328004 - 16327902
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||| |||||||| |||||   ||| ||||||| |||||||||||||||||||||| |||||| |||| ||||||||||||||||| | ||| |||||||    
T  16328004 aagaaaaagtgtgcttgtgtgaggtgcacatgaacacgtgtcagatttttatgtgggtgtcaatggatgtattgccacctaaggatatttatctatcatt 16327905  T
Q  101 act 103  Q
    |||    
T  16327904 act 16327902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 3921262 - 3921366
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| ||||||| ||| |||| |||||||||||| ||||| |||||| || | ||||||||||||||| ||| ||||||||||     
T  3921262 aagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcata 3921361  T
Q  101 actct 105  Q
    |||||    
T  3921362 actct 3921366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 41470427 - 41470519
Alignment:
Q  15 ttgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattactctaa 107  Q
    |||||| |||||||| |||| ||||||||||||||||| || || | ||||||| ||||||||||||| | ||||||||||| ||||||||||    
T  41470427 ttgtgcggggtccacgtgactacgtgtcagatttttatatgaattttaaaggatgtattgccacctaaaggtgtctatgtattattactctaa 41470519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 31009088 - 31008987
Alignment:
Q  4 agaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattact 103  Q
    |||||||||| |||||| || ||||| |||| ||||||||||||||| ||||| |||  ||| || ||||| ||||||||||||| |||||||||| |||    
T  31009088 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtggaagaatgtattgtcacctaaggatgtttatgtatcataact 31008989  T
Q  104 ct 105  Q
    ||    
T  31008988 ct 31008987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 20073516 - 20073616
Alignment:
Q  4 agaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattact 103  Q
    |||||||||| ||||||||||||||| ||  ||||||  |||||||||||||  ||||||||| | ||||| || |||| ||||||||| ||||||||||    
T  20073516 agaaagtgtgcttgtgcagggtccacgtggtcacgtgcaagatttttatgtgagtgtcaaagggtgtattgtcatctaatgatgtctatatatcattact 20073615  T
Q  104 c 104  Q
    |    
T  20073616 c 20073616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 39688894 - 39689003
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  || ||| |||| || |||||||| | |||||||||| ||||| |||||| |||| ||||||||| ||||| ||| ||||||||||     
T  39688894 aagagaaagtgtacttatgcggggttcatatgaccacatatcagatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtttatgtatcata 39688993  T
Q  101 actctaaaaa 110  Q
    ||||| ||||    
T  39688994 actcttaaaa 39689003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 9603916 - 9603812
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||||||||   ||||||| ||||||| ||||||||||||| ||| | ||| || |  | ||||  ||||||||||||| |||||||||||    
T  9603916 aagagaaagtgtgattgtatggggtccatatgaccatgtgtcagatttttgtgtaggtgtgaatgagtgtattatcacctaaggatgtatatgtatcatt 9603817  T
Q  101 actct 105  Q
    |||||    
T  9603816 actct 9603812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 36875644 - 36875702
Alignment:
Q  45 atttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattact 103  Q
    |||||| ||||| ||||||||| | ||||||||||||||| ||||||||||||||||||    
T  36875644 atttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattact 36875702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 10356698 - 10356639
Alignment:
Q  41 tcagatttttatgtggatgtcaaagg-atatattgccacctaaggatgtctatgtatcat 99  Q
    |||||||||| ||||| |||||| || || ||||||||||||||||||||||||||||||    
T  10356698 tcagatttttgtgtgggtgtcaatgggatgtattgccacctaaggatgtctatgtatcat 10356639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 39557514 - 39557573
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgt 60  Q
    ||||||||||||||||||   |||||||  ||| |||||||||||||||| |||||||||    
T  39557514 aagagaaagtgtgattgtatggggtccatgtgatcacgtgtcagatttttgtgtggatgt 39557573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 25831388 - 25831334
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtg 55  Q
    |||||||| |||| |||||  |||||||||||||||||||| |||||||| ||||    
T  25831388 aagagaaaatgtgtttgtgtggggtccacatgaccacgtgttagatttttttgtg 25831334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 21370107 - 21370058
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagattttt 50  Q
    |||||||| |||| |||||| |||||||| ||||||| ||||||||||||    
T  21370107 aagagaaaatgtgtttgtgcggggtccacgtgaccacatgtcagattttt 21370058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 8956865 - 8956760
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||| ||||||| ||||| | ||||||||||| ||||||||| |||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||    
T  8956865 aagaggaagtgtgcttgtgtaaggtccacatgaacacgtgtcacatttttatgtgggtgtcaaaggatgtattgccacataaggatgtctatgtatcatt 8956766  T
Q  101 actcta 106  Q
    ||||||    
T  8956765 actcta 8956760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 24699951 - 24700060
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||| |||||||||| || ||||||| ||||||||||||||| ||||||| | | |||||||| ||||||||||||||||||||||    
T  24699951 aagagaaagtgtgtttgtacagggtccacgtggccacgtgccagatttttatgtgggtgtcaaaaggtgtattgccaactaaggatgtctatgtatcatt 24700050  T
Q  101 actctaaaaa 110  Q
    ||||||||||    
T  24700051 actctaaaaa 24700060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 11347919 - 11348023
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| || |||||||||||  || ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||     
T  11347919 aagagaaagtgtgcttatgcagggtccatgtggccacgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcata 11348018  T
Q  101 actct 105  Q
    |||||    
T  11348019 actct 11348023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 53982114 - 53982011
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| ||||||||| | ||||||||||||||| |||||||||||||||    
T  53982114 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatt 53982015  T
Q  101 actc 104  Q
    ||||    
T  53982014 actc 53982011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 35536729 - 35536624
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||| ||||||| ||||| | ||||||||||||||||||||| |||||||||||| ||||||| | | ||||||||| |||||||||||||||||||||    
T  35536729 aagaggaagtgtgcttgtgtaaggtccacatgaccacgtgtcacatttttatgtgggtgtcaaatggtgtattgccacataaggatgtctatgtatcatt 35536630  T
Q  101 actcta 106  Q
    ||||||    
T  35536629 actcta 35536624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 27714888 - 27714992
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| ||||||||||||| ||||||||||||||| ||||| ||||||||| | |||| |||||||| | |||||||||||||||    
T  27714888 aagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcatt 27714987  T
Q  101 actct 105  Q
    |||||    
T  27714988 actct 27714992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 54868892 - 54868996
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||||||||||||||| |||||||| | || ||||||||||||||| ||||| ||||||| | | ||||||||||||||| |||||||||||||||    
T  54868892 aagagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatt 54868991  T
Q  101 actct 105  Q
    |||||    
T  54868992 actct 54868996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 14623836 - 14623939
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||   ||||||||||| ||| |||||||||||||||||| |||||| || | |||||||||||||||||||||||||||||||    
T  14623836 aagagaaagtgtgcttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtatcatt 14623935  T
Q  101 actc 104  Q
    ||||    
T  14623936 actc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 33644303 - 33644200
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| ||||||||| | |||||||||| |||| |||||||||||||||    
T  33644303 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcatt 33644204  T
Q  101 actc 104  Q
    ||||    
T  33644203 actc 33644200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 31456792 - 31456690
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| ||||||||||||| ||||||||||||||| ||||| ||||||||| | ||||||| |||| || |||||||||||||||    
T  31456792 aagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccgcctatgggtgtctatgtatcatt 31456693  T
Q  101 act 103  Q
    |||    
T  31456692 act 31456690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 41189761 - 41189865
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||  || |||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||| ||||||||||     
T  41189761 aagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggtgtcaaatgatgtattgccacctaaggatgtatatgtatcata 41189860  T
Q  101 actct 105  Q
    |||||    
T  41189861 actct 41189865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 49607517 - 49607413
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||  || ||||| |||| ||||||||||||||| ||||| ||||||||| | ||||||||||||||| |||||||||||||||    
T  49607517 aagagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatt 49607418  T
Q  101 actct 105  Q
    |||||    
T  49607417 actct 49607413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 26141529 - 26141632
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||  |||||||  |||||||||||||||||||| ||||| ||| ||||| | ||||||||||||||||||||||||||||||     
T  26141529 aagagaaagtgtgcttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcata 26141628  T
Q  101 actc 104  Q
    ||||    
T  26141629 actc 26141632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 13898052 - 13898154
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||   ||||||||||| |||||||||||||||||||||| |||||| || | ||||||||||||||||||| ||| |||||||    
T  13898052 aagagaaagtgtgcttgtgtgaggtccacatgaacacgtgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtttatctatcatt 13898151  T
Q  101 act 103  Q
    |||    
T  13898152 act 13898154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 52629403 - 52629305
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcat 99  Q
    ||||||||||||| |||| | |||||||| |||| ||||||||||||||| ||||| ||||||||| | ||||||||||||||| ||||||||||||||    
T  52629403 aagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 52629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 9563101 - 9562997
Alignment:
Q  2 agagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatta 101  Q
    |||||||||||| ||||||||| ||||| |||| ||||||||||||||||| ||||||||||||| | ||||| || |||| | ||| ||||||||||||    
T  9563101 agagaaagtgtgtttgtgcaggatccacgtgactacgtgtcagatttttatatggatgtcaaaggttgtattgtcatctaatggtgtttatgtatcatta 9563002  T
Q  102 ctcta 106  Q
    |||||    
T  9563001 ctcta 9562997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 8076496 - 8076393
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| |||||| |||||||| ||||| ||||||||| | || |||||||||||| ||| |||||||||||    
T  8076496 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtatcatt 8076397  T
Q  101 actc 104  Q
    ||||    
T  8076396 actc 8076393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 17470508 - 17470397
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||  |||||||| |||| ||||||||||||||| ||||| ||| ||| | | ||||||||||||| | |||||||||||||||    
T  17470508 aagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccacctaaaggtgtctatgtatcatt 17470409  T
Q  101 actctaaaaata 112  Q
    |||||| |||||    
T  17470408 actctagaaata 17470397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 11095352 - 11095454
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| || ||| ||||  || |||| ||||||||||||||| ||||| ||||||||| | ||||||||||||||| |||||||||||||||    
T  11095352 aagagaaagtgtgtttatgcggggt--acgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatt 11095449  T
Q  101 actct 105  Q
    |||||    
T  11095450 actct 11095454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 47531968 - 47531865
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||| || ||| |||||||||||||| || ||||||||| ||| | | |||||||| |||||||||||||||||||||     
T  47531968 aagagaaagtgtgcttgtgcggggttcatatggccacgtgtcagattcttgtgtggatgttaaaaggtgtattgccatctaaggatgtctatgtatcata 47531869  T
Q  101 actc 104  Q
    ||||    
T  47531868 actc 47531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 48587088 - 48587187
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| || ||||| |||| ||||||||||||||||||| | ||||||||| | ||||||||||||||| | |||||||||||||    
T  48587088 aagagaaagtgtacttgtgcgggatccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtatctatgtatcatt 48587187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 51419357 - 51419460
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| ||||| |  || ||||||||||||||||| ||||| ||| ||||||| ||||| || |||||||||||||||||||||     
T  51419357 aagagaaagtgtgcttgtgcggggtctatgtggccacgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcata 51419456  T
Q  101 actc 104  Q
    ||||    
T  51419457 actc 51419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 26754798 - 26754700
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcat 99  Q
    |||||||| |||| |||||| |||||||  ||||||| |||||||||||| |||||||||| |||| | ||||||||||||||| |||||||| |||||    
T  26754798 aagagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtccaagggtgtattgccacctaagggtgtctatgaatcat 26754700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 39670092 - 39670019
Alignment:
Q  23 ggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtat 96  Q
    ||||||||||| ||||||||| |||||||| | |||||||| |||||||||||||| |||||||||||||||||    
T  39670092 ggtccacatgatcacgtgtcaaatttttatatagatgtcaagggatatattgccacataaggatgtctatgtat 39670019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 35965804 - 35965875
Alignment:
Q  34 ccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattactct 105  Q
    ||||||||||||||||||||||| ||||||||||| ||||  ||| ||||||||| ||||||||||||||||    
T  35965804 ccacgtgtcagatttttatgtgggtgtcaaaggatgtattatcacttaaggatgtatatgtatcattactct 35965875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 36707456 - 36707525
Alignment:
Q  36 acgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattactct 105  Q
    ||||||||||||||| ||||||||||||||| | ||||| ||||||||| | ||||||||||||||||||    
T  36707456 acgtgtcagatttttgtgtggatgtcaaagggtgtattgtcacctaagggtatctatgtatcattactct 36707525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 33118848 - 33118952
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| || ||  || ||||| |||| |||||||| |||||| ||||| ||||||||| | ||||| ||||||||| ||||||||||||||     
T  33118848 aagagaaagtgtgtttctgagggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcata 33118947  T
Q  101 actct 105  Q
    |||||    
T  33118948 actct 33118952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 20764912 - 20765015
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||| | |||||||  || ||||||||||||||||| ||||| ||| ||||  | |||| |||||||||||||||||||| ||||     
T  20764912 aagagaaagtgtgcttgtacggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaaggatgtctatgtctcata 20765011  T
Q  101 actc 104  Q
    ||||    
T  20765012 actc 20765015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 41080810 - 41080709
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||| |||| |||||  |||||||||||||||| | ||||||||||  |||| ||||||||| | | |||| || |||||||||||||||||||||    
T  41080810 aagagaaaatgtgcttgtgt-gggtccacatgaccacatatcagatttttgcgtgggtgtcaaagggtgttttgctac-taaggatgtctatgtatcatt 41080713  T
Q  101 actc 104  Q
    ||||    
T  41080712 actc 41080709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 45058550 - 45058652
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||||| |  |||||| ||||||| |||  ||| |||||||||||||||||| |||| |||| | ||||||||||||||| ||| ||||||||||     
T  45058550 aagagaaagtatacttgtgcggggtccatatggtcacatgtcagatttttatgtgggtgtc-aagggtgtattgccacctaagggtgtttatgtatcata 45058648  T
Q  101 actc 104  Q
    ||||    
T  45058649 actc 45058652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 25407144 - 25407245
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcaga-tttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcat 99  Q
    ||||||||||||| |||||  || |||| |||| ||||||||||| ||||| ||||  |||||| || |||||||||||||| || ||| ||||||||||    
T  25407144 aagagaaagtgtgtttgtgtgggatccatatgatcacgtgtcagattttttgtgtgtgtgtcaaggggtatattgccacctatggttgtgtatgtatcat 25407243  T
Q  100 ta 101  Q
    ||    
T  25407244 ta 25407245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 30801730 - 30801839
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||| |||| |||||  ||||||| ||||| || ||||| |||||| ||||| | ||||||| | ||||  ||||||||| |||||||||||||||    
T  30801730 aagagaaaatgtgcttgtgtggggtccatatgactacatgtcatatttttgtgtgggtatcaaagggtgtattatcacctaagggtgtctatgtatcatt 30801829  T
Q  101 actctaaaaa 110  Q
     ||| |||||    
T  30801830 gctcaaaaaa 30801839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 11907474 - 11907370
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||| |||| |||||| ||||||| |||||||| |||||||||||| ||||  |||  | |  | ||||| ||||||||| ||||||||||||||     
T  11907474 aagagaaaatgtgcttgtgcggggtccatatgaccacatgtcagatttttgtgtgagtgttcaggtgtgtattgtcacctaagggtgtctatgtatcata 11907375  T
Q  101 actct 105  Q
    |||||    
T  11907374 actct 11907370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 35093688 - 35093592
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatc 97  Q
    ||||||||||||| ||||   | || ||||||||||| ||||||||||||  |||||||||||| | | ||||| ||||||| | ||||||||||||    
T  35093688 aagagaaagtgtgcttgtatggagttcacatgaccacatgtcagatttttgcgtggatgtcaaatgttgtattgtcacctaaagttgtctatgtatc 35093592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 21746213 - 21746286
Alignment:
Q  36 acgtgtcagatttttatgtgga--tgtcaaaggatatattgccacctaaggatgtctatgtatcattactctaa 107  Q
    ||||||||||||||| |||||   |||| | | || ||||||||||||||||||| ||||||||||||||||||    
T  21746213 acgtgtcagatttttgtgtgggggtgtccaggaatgtattgccacctaaggatgtatatgtatcattactctaa 21746286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 36331326 - 36331407
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaa 82  Q
    ||||||||||||  |||||| ||||||| ||| |||| |||||||||||| ||||| |||||| || |  ||||||||||||    
T  36331326 aagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgcattgccacctaa 36331407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 36331407 - 36331482
Alignment:
Q  33 accacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattactctaaa 108  Q
    ||||| || ||||||||| |||||||||||| || |  ||||||| |||||| ||| |||||||||| ||||||||    
T  36331407 accacatgccagatttttgtgtggatgtcaaggggtgcattgccatctaagggtgtttatgtatcataactctaaa 36331482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 48375703 - 48375808
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||| |||| |||||| |||||||  |||||||  ||||||||||| | ||||| |  | || | ||||| ||||||||| |||||||| |||||     
T  48375703 aagagaaaatgtgcttgtgcggggtccatgtgaccacacgtcagatttttgtatggattttcaggggtgtattgtcacctaagggtgtctatgaatcata 48375802  T
Q  101 actcta 106  Q
    ||||||    
T  48375803 actcta 48375808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 25395330 - 25395438
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||| |||| |||||  ||||| | ||  |||| |||||||||||| ||||| | | || |||| ||| ||||| ||||||||| ||||||||||     
T  25395330 aagagaaaatgtgtttgtgtggggtctatatagccacatgtcagatttttgtgtgggtattaagggatgtatggccacataaggatgtttatgtatcata 25395429  T
Q  101 actctaaaa 109  Q
     ||||||||    
T  25395430 gctctaaaa 25395438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 5e-30; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 17598657 - 17598554
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| ||||||| ||| ||||||||||||||| |||||||||||||||    
T  17598657 aagagaaagtgtgcttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcatt 17598558  T
Q  101 actc 104  Q
    ||||    
T  17598557 actc 17598554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 31976351 - 31976246
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||| ||  |||||||||||||||||||| ||||| ||| ||||| ||||||||||||||||||||||||||||||||     
T  31976351 aagagaaagtgtgcttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcata 31976252  T
Q  101 actcta 106  Q
    ||||||    
T  31976251 actcta 31976246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 32869781 - 32869678
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| ||||||||| | ||||||||||||||| |||||||||||| ||    
T  32869781 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcttt 32869682  T
Q  101 actc 104  Q
    ||||    
T  32869681 actc 32869678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 11427721 - 11427614
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccaccta--aggatgtctatgtatca 98  Q
    ||||||||||||| |||||| || ||||| |||| ||||||||||||||| ||||| ||||||||||| ||||||||||||  ||| |||||||||||||    
T  11427721 aagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagagggtgtctatgtatca 11427622  T
Q  99 ttactcta 106  Q
    ||||||||    
T  11427621 ttactcta 11427614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 22880655 - 22880755
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| |||||||||| |||| ||||| ||||||||| | ||||||||||||||| |||||||||||||||    
T  22880655 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatt 22880754  T
Q  101 a 101  Q
    |    
T  22880755 a 22880755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 31953027 - 31953130
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||   ||||||||||| ||| |||||||||||||||||| |||||| || | ||||||||||||||||||||||| |||||||    
T  31953027 aagagaaagtgtgtttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatctatcatt 31953126  T
Q  101 actc 104  Q
    ||||    
T  31953127 actc 31953130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 31109397 - 31109506
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  || ||| ||||| || |||| ||||||||||||||| ||||||||||||||| | ||||||||||||||| |||||||  ||||||    
T  31109397 aagagaaagtgtacttttgcggggtctacgtgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctattaatcatt 31109496  T
Q  101 actctaaaaa 110  Q
    |||| |||||    
T  31109497 actcaaaaaa 31109506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 28536485 - 28536582
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||  ||||||||||||||  ||||||||||||| ||||| |||||| || | ||||||||||||||||||| |||||||||||    
T  28536485 aagagaaagtgtgcttgtgtggggtccacatgacc--gtgtcagatttttgtgtgggtgtcaagggttgtattgccacctaaggatgtttatgtatcatt 28536582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 31110758 - 31110860
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| ||||||||||||||  ||   ||||||||||||||| || |  ||||||||| | ||||||||||||||||||||||||||||||     
T  31110758 aagagaaagtgtgcttgtgcagggtccatgtggttacgtgtcagatttttgtgag--tgtcaaagggtgtattgccacctaaggatgtctatgtatcata 31110855  T
Q  101 actct 105  Q
    |||||    
T  31110856 actct 31110860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 6209462 - 6209566
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| | |||| |||||||| |||| ||||| ||||||||| ||||  |||||||   | ||||||||||||||| |||||||||||||||    
T  6209462 aagagaaagtgtgctagtgcggggtccacgtgactacgtgacagatttttgtgtgagtgtcaaatagtgtattgccacctaagggtgtctatgtatcatt 6209561  T
Q  101 actct 105  Q
    |||||    
T  6209562 actct 6209566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 15832680 - 15832576
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||| |||  ||||||||| ||||| |||| |||||||| |||||| ||||| ||||||| ||| ||||| ||||||| | |||||||||||||||    
T  15832680 aagagaaaatgtatttgtgcaggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaatgatttattgtcacctaaaggtgtctatgtatcatt 15832581  T
Q  101 actct 105  Q
    |||||    
T  15832580 actct 15832576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 15990039 - 15990143
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| ||||||| ||| |||| |||||||||||| ||||| |||||| || | ||||||||||||||| ||| ||||||||||     
T  15990039 aagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcata 15990138  T
Q  101 actct 105  Q
    |||||    
T  15990139 actct 15990143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 30341357 - 30341461
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| ||||||| ||| |||| |||||||||||| ||||| |||||| || | ||||||||||||||| ||| ||||||||||     
T  30341357 aagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcata 30341456  T
Q  101 actct 105  Q
    |||||    
T  30341457 actct 30341461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 15508021 - 15508124
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| ||||||| ||| |||| |||||||||||| ||||| |||||| || | ||||||||||||||| ||| ||||||||||     
T  15508021 aagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcata 15508120  T
Q  101 actc 104  Q
    ||||    
T  15508121 actc 15508124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 4231651 - 4231542
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| ||||||| ||| ||||||||||||||||| ||||| || ||| || | ||||||||||||| ||||| |||| |||||     
T  4231651 aagagaaagtgtacttgtgcggggtccatatggccacgtgtcagatttttgtgtgggtggcaaggggtgtattgccacctaatgatgtttatgaatcata 4231552  T
Q  101 actctaaaaa 110  Q
    |||| |||||    
T  4231551 actcaaaaaa 4231542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 12732561 - 12732481
Alignment:
Q  25 tccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattactct 105  Q
    |||||||  ||||||||||||||||| ||||| |||||| |  ||||||||||| |||| |||||||||||||||||||||    
T  12732561 tccacatagccacgtgtcagatttttgtgtgggtgtcaatgattatattgccacttaagaatgtctatgtatcattactct 12732481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 29857930 - 29857821
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| || ||| || ||||| | || ||||||||||||||| ||||| ||| ||| | | |||||||| |||| | |||||||||||||||    
T  29857930 aagagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcatt 29857831  T
Q  101 actctaaaaa 110  Q
    |||| |||||    
T  29857830 actccaaaaa 29857821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 23128124 - 23128224
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||  || ||||| |||| ||||||||||||||| ||||| ||||||||||| ||||  ||| ||| | ||||||| |||||||    
T  23128124 aagagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattatcacataaaggtgtctatatatcatt 23128223  T
Q  101 a 101  Q
    |    
T  23128224 a 23128224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 9379733 - 9379807
Alignment:
Q  25 tccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcat 99  Q
    |||||||| |||||||||| |||||| | ||| |||||| |||| ||||| || |||||||||||||||||||||    
T  9379733 tccacatggccacgtgtcaaatttttgtatgggtgtcaagggatgtattgtcatctaaggatgtctatgtatcat 9379807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 22422084 - 22422120
Alignment:
Q  70 tattgccacctaaggatgtctatgtatcattactcta 106  Q
    |||||||||||||||||||||||||||||||||||||    
T  22422084 tattgccacctaaggatgtctatgtatcattactcta 22422120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 32659867 - 32659899
Alignment:
Q  181 gaagtaagtaaaatttaatcaataattatttta 213  Q
    |||||||||||||||||||||||||||||||||    
T  32659867 gaagtaagtaaaatttaatcaataattatttta 32659899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 946442 - 946377
Alignment:
Q  38 gtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattact 103  Q
    |||||||||||||  || | ||||||||| | ||||  |||||||||||||||||||||| |||||    
T  946442 gtgtcagatttttgggtaggtgtcaaagggtgtattatcacctaaggatgtctatgtatcgttact 946377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 9474873 - 9474976
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| ||||||||| | ||||||||||||||| |||||||||||||||    
T  9474873 aagagaaagtgtgtttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatt 9474972  T
Q  101 actc 104  Q
    ||||    
T  9474973 actc 9474976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 2582015 - 2581914
Alignment:
Q  4 agaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattact 103  Q
    |||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| ||||||||| | ||||||||||||||| ||||||||||||||||||    
T  2582015 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattact 2581916  T
Q  104 ct 105  Q
    ||    
T  2581915 ct 2581914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 48716279 - 48716388
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||| |||||||| |||||| |||||||| |||| ||||||||||||||| ||||||||||||| | | ||||||||||||||| |||||||||||||||    
T  48716279 aagataaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcatt 48716378  T
Q  101 actctaaaaa 110  Q
    |||| |||||    
T  48716379 actcaaaaaa 48716388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 32813350 - 32813246
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||  |||||||||||||||||||| ||||| ||| ||||| | ||||||||||||||||||||||||||||||     
T  32813350 aagagaaagtgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcata 32813251  T
Q  101 actct 105  Q
    |||||    
T  32813250 actct 32813246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 51898683 - 51898787
Alignment:
Q  4 agaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattact 103  Q
    |||||||||| |||||| || ||||| |||| ||||||||||||||| ||||| ||||||||| | ||||||||||||| ||||||||||||||||||||    
T  51898683 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattact 51898782  T
Q  104 ctaaa 108  Q
    |||||    
T  51898783 ctaaa 51898787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 27564732 - 27564835
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||  ||||||||||||||| ||||| ||||||| | | |||||||||||||||||||||||||||||||    
T  27564732 aagagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcatt 27564831  T
Q  101 actc 104  Q
    ||||    
T  27564832 actc 27564835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 50630561 - 50630455
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| |  |||||||| ||||||||||||||| | |||||||||||||    
T  50630561 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtaacaaaggatgtattgccacctaagggtatctatgtatcatt 50630462  T
Q  101 actctaa 107  Q
    |||||||    
T  50630461 actctaa 50630455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 8346385 - 8346489
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| ||||||||||||||| |||| ||||||||||||||| ||||| ||||||| | | ||||||||||||| | || ||||||||||||    
T  8346385 aagagaaagtgtgcttgtgcagggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaaggtgactatgtatcatt 8346484  T
Q  101 actct 105  Q
    |||||    
T  8346485 actct 8346489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 38632318 - 38632422
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||| |||||||| |||||| |||||||| |||| ||||||||||||||| ||||||||| ||| | | ||||||||||||||| |||||||||||||||    
T  38632318 aagaaaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcatt 38632417  T
Q  101 actct 105  Q
    |||||    
T  38632418 actct 38632422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 3000422 - 3000319
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||| | |||||||| |||| ||||||||||||||| ||||| ||||||||| | ||||||||||||||| ||| |||||||||||    
T  3000422 aagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtatcatt 3000323  T
Q  101 actc 104  Q
    ||||    
T  3000322 actc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 23597088 - 23597192
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||| |||||||| ||||||| |||| || || ||||||||||||||||||||||| | ||||||  | ||||||||||||| |||||||||||||||||    
T  23597088 aagataaagtgtgtttgtgcaaggtcaacgtggccacgtgtcagatttttatgtgggtatcaaagagtgtattgccacctaatgatgtctatgtatcatt 23597187  T
Q  101 actct 105  Q
    |||||    
T  23597188 actct 23597192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 38595257 - 38595153
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||| | |||||||| |||| ||||||||||||||| ||||| ||||||||| | ||||||||||||| | ||| |||||||||||    
T  38595257 aagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcatt 38595158  T
Q  101 actct 105  Q
    |||||    
T  38595157 actct 38595153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 44548373 - 44548473
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||| |||| ||||||||||||||| ||||| | ||||| | | ||||||||||||| |||||||||||||||||    
T  44548373 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtatcaaatggtgtattgccacctaaagatgtctatgtatcatt 44548472  T
Q  101 a 101  Q
    |    
T  44548473 a 44548473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 43235 - 43132
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| | |||||| |||| ||||||||||||||| ||||| ||||||||||| ||||| | ||||||  |||||||||||||||    
T  43235 aagagaaagtgtgcttgtgcggagtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtctcctaagactgtctatgtatcatt 43136  T
Q  101 actc 104  Q
    ||||    
T  43135 actc 43132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 47452317 - 47452420
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| || ||||| |||| |||||| |||||||| ||||| ||||||||| | |||| |||||||||| |||||||||||||||    
T  47452317 aagagaaagtgtgcttgtgcgggatccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatt 47452416  T
Q  101 actc 104  Q
    ||||    
T  47452417 actc 47452420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 41758908 - 41758803
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| |||||||  |||| ||||||||||||||| ||||| ||||||||| | ||||||||  ||| | |||||||||||||||    
T  41758908 aagagaaagtgtgtttgtgcggggtccatgtgactacgtgtcagatttttgtgtggttgtcaaagggtgtattgccatttaatggtgtctatgtatcatt 41758809  T
Q  101 actcta 106  Q
    ||||||    
T  41758808 actcta 41758803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 26274535 - 26274435
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||| |||||||  ||||||||| ||||| |||| | ||||||||||||| ||||||||||||| ||| ||||||||| ||||| |||||||||||||||    
T  26274535 aagaaaaagtgtacttgtgcaggatccacgtgactatgtgtcagatttttctgtggatgtcaaatgatgtattgccacataagggtgtctatgtatcatt 26274436  T
Q  101 a 101  Q
    |    
T  26274435 a 26274435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 11152378 - 11152476
Alignment:
Q  4 agaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattact 103  Q
    |||||| ||| |||||| ||||| ||||||| ||||||||||||||| |||||||||| |||| | ||||||||||||||| ||||||||| ||||||||    
T  11152378 agaaagcgtgcttgtgcggggtctacatgactacgtgtcagatttttgtgtggatgtcgaagggtgtattgccacctaagg-tgtctatgtttcattact 11152476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 37649297 - 37649198
Alignment:
Q  5 gaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattactc 104  Q
    ||||||||| |||||| |  | ||| |||||||||||||||||||| ||||| ||||||||  | ||||||||||||| |||||||||||||||||||||    
T  37649297 gaaagtgtgcttgtgcggaattcacgtgaccacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaagatgtctatgtatcattactc 37649198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 49811524 - 49811628
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| | ||| | ||| | ||||||||||||||| ||||||||||||| | | ||||| ||||||||||||||||| ||||||     
T  49811524 aagagaaagtgtgcttgtgcggagtctatatggctacgtgtcagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctatctatcata 49811623  T
Q  101 actct 105  Q
    |||||    
T  49811624 actct 49811628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 50590997 - 50591100
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| ||||||| ||| |||| |||||||||||| ||||| |||||| || | ||||||||||||||| ||| ||||||||||     
T  50590997 aagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcata 50591096  T
Q  101 actc 104  Q
    ||||    
T  50591097 actc 50591100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 37926435 - 37926540
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||| | || ||||  || ||||||||||||||||||||||| ||| ||| ||| ||||||||||||| ||| ||||||||||||     
T  37926435 aagagaaagtgtacttgtacgggatccatgtggccacgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcata 37926534  T
Q  101 actcta 106  Q
    ||||||    
T  37926535 actcta 37926540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 41608490 - 41608599
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||| | ||||||| ||| |||| |||||||||||| ||||  |||||| || | ||||||||||||||||||| ||||||||||     
T  41608490 aagagaaagtgtacttgtacggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtttatgtatcata 41608589  T
Q  101 actctaaaaa 110  Q
    |||| |||||    
T  41608590 actcaaaaaa 41608599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 3302533 - 3302633
Alignment:
Q  4 agaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattact 103  Q
    |||||||||| ||||   ||||||| ||||  ||||||||||||||| ||||| |||| | | |||||||| ||||||||||||| ||||||||||||||    
T  3302533 agaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggtgtccaggaatatattgtcacctaaggatgtatatgtatcattact 3302632  T
Q  104 c 104  Q
    |    
T  3302633 c 3302633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 5958997 - 5959101
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||  |||||| ||||||| |||||||| |||||||||||| ||||| ||||||  | | ||||||||| ||||| ||| ||||||||||     
T  5958997 aagagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgtttatgtatcata 5959096  T
Q  101 actct 105  Q
    |||||    
T  5959097 actct 5959101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 26440837 - 26440741
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatc 97  Q
    ||||||||||||| || ||| || ||||  || ||||||||||||||||| ||||| ||| ||||| | ||||| || |||||||||||||| ||||    
T  26440837 aagagaaagtgtgcttatgcgggatccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtattgtcatctaaggatgtctatctatc 26440741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 45044557 - 45044666
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||| |||| |||||| |||||||  || | || |||||||||||| | ||| ||||||| | | ||||||||||||||||  | ||||||||||     
T  45044557 aagagaaaatgtgtttgtgcggggtccatgtggctacatgtcagatttttgtatgggtgtcaaatggtgtattgccacctaaggaaatgtatgtatcata 45044656  T
Q  101 actctaaaaa 110  Q
    ||||| ||||    
T  45044657 actcttaaaa 45044666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 6260970 - 6260870
Alignment:
Q  4 agaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcattact 103  Q
    ||||| |||| || ||| |||||||| ||||||| ||| |||||||||||||| |||  | || | |||| |||||||||||| ||||| |||||| |||    
T  6260970 agaaaatgtgcttatgcggggtccacgtgaccacatgttagatttttatgtgggtgttcaggggtgtattaccacctaaggatatctatctatcataact 6260871  T
Q  104 c 104  Q
    |    
T  6260870 c 6260870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 47748545 - 47748443
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    |||||||||| |  |||||| || |||| ||| |||| |||||||||||||| ||| |||| |||| | ||||||||||||||| | | ||||||||||     
T  47748545 aagagaaagtatacttgtgcgggatccatatggccacatgtcagatttttatatgggtgtc-aagggtgtattgccacctaagggtatttatgtatcata 47748447  T
Q  101 actc 104  Q
    ||||    
T  47748446 actc 47748443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 44454082 - 44453984
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcat 99  Q
    |||| |||||||| |||||  || ||||| | ||||| |||||||||||| ||||| | ||||  ||| ||||||||| ||| | ||||||||||||||    
T  44454082 aagaaaaagtgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtgtgggtatcaagagatgtattgccacttaaaggtgtctatgtatcat 44453984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 44332368 - 44332441
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattg 74  Q
    |||||||||| |  |||||| ||||||| | | |||| |||||||||||||||||| ||||||  |||||||||    
T  44332368 aagagaaagtatacttgtgcggggtccatagggccacatgtcagatttttatgtgggtgtcaagagatatattg 44332441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 48489400 - 48489343
Alignment:
Q  4 agaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtc 61  Q
    ||||| |||| |||||| || ||||| ||||||| |||||||||||| ||||||||||    
T  48489400 agaaaatgtgcttgtgcgggatccacgtgaccacatgtcagatttttgtgtggatgtc 48489343  T

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Target: scaffold0321 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 10106 - 10210
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||| |  ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||     
T  10106 aagagaaagtgtgcttgtacgcggtccacgtgactacgtgtcagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtatcata 10205  T
Q  101 actct 105  Q
    |||||    
T  10206 actct 10210  T

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Target: scaffold1268 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 926 - 1029
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| || | ||| |||| ||||||||| ||||| ||||||||| ||||| | ||||||||||||| |||||||||||||||||    
T  926 aagagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcatt 1025  T
Q  101 actc 104  Q
    ||||    
T  1026 actc 1029  T

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Target: scaffold1267 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 926 - 1029
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| |||||| || | ||| |||| ||||||||| ||||| ||||||||| ||||| | ||||||||||||| |||||||||||||||||    
T  926 aagagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcatt 1025  T
Q  101 actc 104  Q
    ||||    
T  1026 actc 1029  T

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Target: scaffold0237 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 4132 - 4023
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaaggatgtctatgtatcatt 100  Q
    ||||||||||||| || ||| || ||||| | || ||||||||||||||| ||||| ||| ||| | | |||||||| |||| | |||||||||||||||    
T  4132 aagagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcatt 4033  T
Q  101 actctaaaaa 110  Q
    |||| |||||    
T  4032 actccaaaaa 4023  T

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Target: scaffold0316 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 17157 - 17077
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccaccta 81  Q
    |||||||| |||| |||||| |||||||  ||||||| |||||||||||| |||||||||| | |||| |||||| |||||    
T  17157 aagagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtcgagggatgtattgcaaccta 17077  T

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Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 152601 - 152518
Alignment:
Q  1 aagagaaagtgtgattgtgcagggtccacatgaccacgtgtcagatttttatgtggatgtcaaaggatatattgccacctaagg 84  Q
    ||||||||||||  |||||| || |||| |||||||| |||||||||||| ||||| |||||| || | |||||||||| ||||    
T  152601 aagagaaagtgtatttgtgcgggatccatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacccaagg 152518  T

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