View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20718_low_6 (Length: 344)

Name: NF20718_low_6
Description: NF20718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20718_low_6
NF20718_low_6
[»] chr8 (36 HSPs)
chr8 (107-300)||(41330066-41330250)
chr8 (6-103)||(5957914-5958011)
chr8 (1-101)||(40423864-40423964)
chr8 (1-105)||(8841349-8841453)
chr8 (1-100)||(12831126-12831225)
chr8 (3-107)||(32032805-32032909)
chr8 (1-104)||(10284549-10284652)
chr8 (6-100)||(34012218-34012312)
chr8 (6-104)||(43414499-43414597)
chr8 (13-106)||(32707919-32708012)
chr8 (1-105)||(4854780-4854884)
chr8 (1-100)||(504043-504142)
chr8 (1-100)||(14548001-14548100)
chr8 (1-100)||(15197412-15197511)
chr8 (13-100)||(23122519-23122606)
chr8 (13-104)||(42354506-42354597)
chr8 (6-100)||(9122269-9122363)
chr8 (14-100)||(30479396-30479482)
chr8 (1-106)||(16056317-16056422)
chr8 (6-106)||(37038563-37038663)
chr8 (1-100)||(24307715-24307814)
chr8 (6-92)||(1179870-1179956)
chr8 (16-100)||(44507010-44507093)
chr8 (1-100)||(34307295-34307394)
chr8 (1-62)||(20074902-20074963)
chr8 (15-100)||(42710216-42710301)
chr8 (6-105)||(40467784-40467883)
chr8 (1-104)||(15048099-15048203)
chr8 (8-104)||(42221601-42221697)
chr8 (1-104)||(15258847-15258950)
chr8 (6-105)||(10621014-10621103)
chr8 (8-103)||(25838275-25838370)
chr8 (1-66)||(16383456-16383521)
chr8 (14-102)||(17443917-17444005)
chr8 (15-82)||(14055532-14055599)
chr8 (13-104)||(30183794-30183884)
[»] chr3 (41 HSPs)
chr3 (3-104)||(35965700-35965801)
chr3 (1-104)||(24699873-24699975)
chr3 (7-104)||(30801651-30801748)
chr3 (1-104)||(8076472-8076575)
chr3 (8-104)||(20764833-20764929)
chr3 (1-104)||(11347840-11347943)
chr3 (1-100)||(33644279-33644378)
chr3 (1-104)||(36331247-36331350)
chr3 (13-100)||(36707350-36707437)
chr3 (1-104)||(51419278-51419381)
chr3 (1-100)||(53982090-53982189)
chr3 (1-100)||(54868817-54868916)
chr3 (7-104)||(14623757-14623854)
chr3 (7-104)||(35536711-35536808)
chr3 (7-100)||(49607499-49607592)
chr3 (16-104)||(42823205-42823293)
chr3 (3-100)||(9563080-9563177)
chr3 (8-104)||(21746106-21746202)
chr3 (16-104)||(45058471-45058559)
chr3 (1-100)||(31456768-31456867)
chr3 (8-107)||(35093671-35093770)
chr3 (1-104)||(41189682-41189785)
chr3 (7-102)||(43746424-43746519)
chr3 (7-105)||(8956847-8956945)
chr3 (7-104)||(26141448-26141547)
chr3 (13-104)||(33118768-33118860)
chr3 (1-104)||(47531944-47532047)
chr3 (7-100)||(17470490-17470583)
chr3 (8-100)||(52629386-52629478)
chr3 (1-104)||(26754774-26754877)
chr3 (13-99)||(39670102-39670188)
chr3 (7-100)||(25395256-25395348)
chr3 (1-102)||(48375626-48375727)
chr3 (7-75)||(1758404-1758471)
chr3 (33-100)||(11095289-11095356)
chr3 (7-102)||(13897975-13898070)
chr3 (33-82)||(27714843-27714892)
chr3 (36-100)||(48587023-48587087)
chr3 (7-105)||(25407064-25407162)
chr3 (7-48)||(41080792-41080833)
chr3 (66-106)||(11140959-11140999)
[»] chr7 (42 HSPs)
chr7 (1-107)||(35468770-35468876)
chr7 (1-100)||(4999436-4999535)
chr7 (1-105)||(22343440-22343544)
chr7 (1-100)||(19329921-19330020)
chr7 (1-100)||(32951415-32951514)
chr7 (6-104)||(31735961-31736059)
chr7 (1-100)||(8080305-8080404)
chr7 (1-104)||(21234480-21234583)
chr7 (1-104)||(32564344-32564447)
chr7 (18-105)||(46033718-46033805)
chr7 (6-104)||(35522960-35523058)
chr7 (1-106)||(38044276-38044381)
chr7 (1-104)||(8238292-8238395)
chr7 (1-100)||(11044257-11044356)
chr7 (1-100)||(38837296-38837395)
chr7 (13-95)||(19436114-19436196)
chr7 (18-104)||(41423778-41423864)
chr7 (1-78)||(35137612-35137689)
chr7 (1-102)||(41915820-41915921)
chr7 (8-100)||(40957793-40957885)
chr7 (1-100)||(7389468-7389566)
chr7 (1-106)||(26296723-26296828)
chr7 (6-82)||(3784079-3784155)
chr7 (7-103)||(16374743-16374839)
chr7 (1-100)||(38267119-38267218)
chr7 (1-104)||(40846031-40846134)
chr7 (8-101)||(1766702-1766795)
chr7 (1-102)||(7727985-7728086)
chr7 (6-74)||(3694451-3694519)
chr7 (7-102)||(18207264-18207359)
chr7 (39-104)||(46374742-46374807)
chr7 (3-106)||(12310985-12311088)
chr7 (13-104)||(27744227-27744318)
chr7 (16-103)||(32045931-32046018)
chr7 (1-48)||(36208252-36208299)
chr7 (33-100)||(36362125-36362192)
chr7 (36-100)||(3434666-3434730)
chr7 (14-102)||(39255844-39255932)
chr7 (13-48)||(10343537-10343572)
chr7 (33-100)||(36361847-36361914)
chr7 (18-102)||(45223138-45223222)
chr7 (16-103)||(2318160-2318249)
[»] chr6 (22 HSPs)
chr6 (1-105)||(31976327-31976431)
chr6 (1-111)||(4231627-4231737)
chr6 (6-100)||(11427702-11427796)
chr6 (1-100)||(17598633-17598732)
chr6 (1-104)||(31110679-31110782)
chr6 (1-100)||(22880580-22880679)
chr6 (1-100)||(32869757-32869856)
chr6 (1-106)||(15989958-15990063)
chr6 (7-104)||(31952948-31953045)
chr6 (13-100)||(29857918-29858005)
chr6 (1-104)||(30341278-30341381)
chr6 (1-104)||(15507942-15508045)
chr6 (7-102)||(28536408-28536503)
chr6 (13-100)||(946467-946554)
chr6 (7-84)||(23128065-23128142)
chr6 (3-100)||(15832658-15832755)
chr6 (1-102)||(30870093-30870193)
chr6 (58-105)||(22421996-22422043)
chr6 (14-71)||(31109351-31109408)
chr6 (13-65)||(6209422-6209474)
chr6 (13-104)||(12732573-12732663)
chr6 (7-75)||(9379659-9379727)
[»] chr5 (29 HSPs)
chr5 (1-109)||(20073429-20073537)
chr5 (1-100)||(18520806-18520905)
chr5 (1-92)||(36732872-36732963)
chr5 (1-100)||(40145486-40145585)
chr5 (1-103)||(6679777-6679879)
chr5 (6-104)||(26720600-26720698)
chr5 (6-104)||(26990349-26990447)
chr5 (6-104)||(31009072-31009170)
chr5 (6-100)||(33149560-33149654)
chr5 (6-100)||(35785283-35785377)
chr5 (1-104)||(15409528-15409631)
chr5 (7-102)||(35943812-35943907)
chr5 (7-104)||(2177449-2177546)
chr5 (1-109)||(2252081-2252189)
chr5 (1-104)||(3921183-3921286)
chr5 (6-100)||(2740358-2740452)
chr5 (8-84)||(39557455-39557531)
chr5 (14-113)||(39688806-39688905)
chr5 (1-95)||(13811731-13811825)
chr5 (6-100)||(14831898-14831992)
chr5 (7-103)||(33825243-33825339)
chr5 (6-101)||(36875537-36875628)
chr5 (13-104)||(6259919-6260010)
chr5 (1-104)||(21370083-21370186)
chr5 (8-102)||(9603899-9603993)
chr5 (36-100)||(31132448-31132512)
chr5 (1-50)||(28177854-28177903)
chr5 (7-113)||(16327986-16328092)
chr5 (1-49)||(42414275-42414323)
[»] chr4 (38 HSPs)
chr4 (1-105)||(41823961-41824065)
chr4 (6-100)||(6034128-6034222)
chr4 (8-107)||(40574865-40574964)
chr4 (1-104)||(50052346-50052449)
chr4 (7-104)||(29239971-29240068)
chr4 (1-100)||(41236426-41236525)
chr4 (1-100)||(48182971-48183070)
chr4 (1-105)||(50813809-50813913)
chr4 (1-105)||(55475270-55475374)
chr4 (1-104)||(19670634-19670737)
chr4 (14-104)||(18924413-18924503)
chr4 (3-101)||(56300086-56300184)
chr4 (7-100)||(23608320-23608413)
chr4 (1-101)||(17983664-17983764)
chr4 (1-104)||(31910271-31910374)
chr4 (1-100)||(42044289-42044388)
chr4 (14-104)||(29547877-29547967)
chr4 (14-104)||(29589658-29589748)
chr4 (1-100)||(11511385-11511483)
chr4 (1-100)||(24995029-24995128)
chr4 (7-101)||(47104629-47104723)
chr4 (6-104)||(50526089-50526187)
chr4 (1-82)||(54473473-54473554)
chr4 (1-104)||(47986287-47986389)
chr4 (8-74)||(480395-480461)
chr4 (7-104)||(28480186-28480283)
chr4 (7-104)||(28481061-28481158)
chr4 (7-104)||(28481936-28482033)
chr4 (6-103)||(48647645-48647742)
chr4 (7-102)||(29977970-29978065)
chr4 (1-104)||(32767037-32767140)
chr4 (14-104)||(44536664-44536754)
chr4 (1-62)||(29234205-29234266)
chr4 (1-100)||(53352496-53352587)
chr4 (7-98)||(18768972-18769062)
chr4 (65-104)||(3481787-3481826)
chr4 (8-45)||(32939639-32939676)
chr4 (14-55)||(55079680-55079721)
[»] chr2 (40 HSPs)
chr2 (1-93)||(33436029-33436121)
chr2 (1-100)||(19930742-19930841)
chr2 (13-105)||(20700906-20700998)
chr2 (6-100)||(17473104-17473198)
chr2 (7-103)||(44152012-44152108)
chr2 (1-100)||(10249304-10249403)
chr2 (1-100)||(28863534-28863633)
chr2 (8-113)||(17823874-17823979)
chr2 (1-100)||(13438422-13438521)
chr2 (1-100)||(40701557-40701656)
chr2 (7-100)||(7465657-7465750)
chr2 (1-101)||(2997408-2997508)
chr2 (1-105)||(36168915-36169019)
chr2 (1-104)||(13365432-13365535)
chr2 (1-100)||(32505570-32505669)
chr2 (1-104)||(38732433-38732536)
chr2 (1-104)||(40613820-40613923)
chr2 (16-106)||(3034899-3034989)
chr2 (1-82)||(9058559-9058640)
chr2 (13-102)||(41758678-41758767)
chr2 (1-106)||(43490200-43490305)
chr2 (8-100)||(30915549-30915641)
chr2 (13-100)||(4060776-4060863)
chr2 (6-100)||(28381577-28381671)
chr2 (5-104)||(33436294-33436383)
chr2 (1-104)||(2533202-2533305)
chr2 (1-104)||(42257272-42257375)
chr2 (1-104)||(45097653-45097756)
chr2 (7-103)||(17819923-17820019)
chr2 (13-106)||(38273059-38273151)
chr2 (1-104)||(3440058-3440161)
chr2 (13-100)||(15428663-15428749)
chr2 (6-100)||(38882733-38882827)
chr2 (1-105)||(3738022-3738126)
chr2 (2-62)||(41575218-41575278)
chr2 (33-100)||(5574422-5574489)
chr2 (7-102)||(21301420-21301515)
chr2 (8-105)||(26891421-26891518)
chr2 (39-100)||(27864808-27864869)
chr2 (18-46)||(2329354-2329382)
[»] chr1 (35 HSPs)
chr1 (1-105)||(32813326-32813430)
chr1 (1-100)||(41758884-41758983)
chr1 (1-113)||(45044469-45044581)
chr1 (6-102)||(49811447-49811543)
chr1 (1-100)||(27564657-27564756)
chr1 (5-102)||(23597011-23597108)
chr1 (1-93)||(50630537-50630629)
chr1 (1-100)||(2581994-2582093)
chr1 (1-100)||(9474798-9474897)
chr1 (6-100)||(37649282-37649376)
chr1 (1-105)||(50590917-50591021)
chr1 (6-106)||(51898599-51898699)
chr1 (1-104)||(5958918-5959021)
chr1 (1-100)||(48716204-48716303)
chr1 (1-82)||(38632261-38632342)
chr1 (14-111)||(41608404-41608501)
chr1 (16-104)||(47748536-47748624)
chr1 (1-104)||(11152296-11152399)
chr1 (6-100)||(47452242-47452336)
chr1 (8-100)||(3000405-3000497)
chr1 (14-110)||(37926350-37926446)
chr1 (8-100)||(38595240-38595332)
chr1 (7-108)||(44454064-44454169)
chr1 (6-100)||(43216-43310)
chr1 (1-82)||(8346327-8346409)
chr1 (16-105)||(44332288-44332377)
chr1 (8-104)||(3302451-3302547)
chr1 (33-100)||(26274540-26274607)
chr1 (13-106)||(6260961-6261054)
chr1 (13-112)||(34339958-34340056)
chr1 (1-56)||(44548342-44548397)
chr1 (42-102)||(11322298-11322358)
chr1 (42-102)||(11480319-11480379)
chr1 (59-104)||(26440861-26440906)
chr1 (7-71)||(13414846-13414910)
[»] scaffold1268 (1 HSPs)
scaffold1268 (6-103)||(848-945)
[»] scaffold1267 (1 HSPs)
scaffold1267 (6-103)||(848-945)
[»] scaffold0110 (1 HSPs)
scaffold0110 (18-104)||(8781-8867)
[»] scaffold0237 (1 HSPs)
scaffold0237 (13-100)||(4120-4207)
[»] scaffold0018 (1 HSPs)
scaffold0018 (14-103)||(152590-152679)
[»] scaffold0321 (1 HSPs)
scaffold0321 (8-100)||(10031-10123)
[»] scaffold0316 (1 HSPs)
scaffold0316 (18-104)||(17199-17285)


Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 107 - 300
Target Start/End: Original strand, 41330066 - 41330250
Alignment:
Q  107 tttttaacacttgacaaggtaacttatttattattggcaaaataagttgagctcaacatgttaacccgtttaacatgttattttaggtgggggtgttgag 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41330066 tttttaacacttgacaaggtaacttatttattattggcaaaataagttgagctcaacaggttaacccgtttaacatgttattttaggtgggggtgttgag 41330165  T
Q  207 atattagatagacattatcattcaaattggtgcgtctagcttgtcctgttaacttaaaaaatctatttttccaattatttatatcacttattca 300  Q
    |||||||||||||||| ||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41330166 atattagatagacattctcattcaaattggtgc---------gtcctgttaacttaaaaaatctatttttccaattatttatatcacttattca 41330250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 5957914 - 5958011
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | ||| ||||||||||||||    
T  5957914 gcacaatcacactttctctttcctctcctcttctctcttcctagtgcatgaggtgtacaagggtgtatgagaataaagggtgtttatgtaacattttc 5958011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 40423964 - 40423864
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| ||||    
T  40423964 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatacatgaggtgtacaagggtgtatgggaataaaaggtgtctatgtatcatt 40423865  T
Q  101 t 101  Q
    |    
T  40423864 t 40423864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 8841453 - 8841349
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| ||||||||||||||||||||||||||||| |||||| | |||| |||||||||| ||||||||||||||| | |||||||||||||||    
T  8841453 accccgcacaagcacactttctctttcctctcctcttctcttttcctagtgcatggggtgtacaagagtgtatgagaataaatggtgtctatgtaacatt 8841354  T
Q  101 ttcca 105  Q
    |||||    
T  8841353 ttcca 8841349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 12831126 - 12831225
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||| | |||||||||| ||||    
T  12831126 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaatggtgtctatgtatcatt 12831225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 32032805 - 32032909
Alignment:
Q  3 cctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatttt 102  Q
    |||||||||  ||||||||||||||  || |||||||||||||||||| |||||||||||||||||||||||  | |||||| |||||||||||||||||    
T  32032805 cctgcacaagtacactttctctttctccttctcttctctcttcctaatacatgaggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatttt 32032904  T
Q  103 ccaat 107  Q
    |||||    
T  32032905 ccaat 32032909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 10284652 - 10284549
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| ||||||||||||||||| || ||||||||||||||| | |||| ||||||||||| ||||| |||||||||| |||||||||||||||    
T  10284652 accccgcacaagcacactttctctttcctttcatcttctctcttcctagtgcatggggtgtacaaggttgtataagaataaaaggtgtctatgtaacatt 10284553  T
Q  101 ttcc 104  Q
    ||||    
T  10284552 ttcc 10284549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 34012312 - 34012218
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| ||||||||| | |||||||||| ||||    
T  34012312 gcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtacgagaataaagggtgtctatgtatcatt 34012218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 43414597 - 43414499
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||||| |||||||||||||| |||||||||||||||||||||||  ||| ||||||||||||||||||  |||||| | |||||||||||||||||||    
T  43414597 gcacaagcacactttctcttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatggcaataaagggtgtctatgtaacattttcc 43414499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 32708012 - 32707919
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttccaa 106  Q
    ||||||||||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||  | |||||| |||||||||||||||||||||    
T  32708012 cacactttctctttcttcttctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttccaa 32707919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 4854884 - 4854780
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    ||||||||||| |||||||||||||| ||||||||||||||||| |||||  ||| | ||||||||||| ||||||||||||   |||||||||||||||    
T  4854884 accctgcacaagcacactttctcttttctctcctcttctctcttactaatgtatgggatgtacaagggtatatgagaataaagagtgtctatgtaacatt 4854785  T
Q  101 ttcca 105  Q
    |||||    
T  4854784 ttcca 4854780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 504142 - 504043
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| ||||| |||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| | |||||||||| ||||    
T  504142 accccgcacaagcacacattctcttttctctcatcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcatt 504043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 14548001 - 14548100
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||| ||||||| | |||||||||| ||||    
T  14548001 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcatt 14548100  T

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Target: chr8; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 15197412 - 15197511
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| |||||||||| |||||||| ||| ||||||||||||||||||||||| ||||||||  |||||||||| ||||    
T  15197412 accccgcacaagcacactttctcttttctctcctcttttctcttccaaatgcatgaggtgtacaagggtgtatgggaataaaaagtgtctatgtatcatt 15197511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 23122606 - 23122519
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||||||||||| ||||||| ||||||||||||||| |||| |||||||||||||||||||||||||| | |||||||||| ||||    
T  23122606 cacactttctcttttctctcctgttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcatt 23122519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 42354597 - 42354506
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    ||||||||||||||| ||| |||||||||||||||| | |||| |||||| ||||||||||||||||||| | |||||||||||||||||||    
T  42354597 cacactttctctttcatcttctcttctctcttcctagtgcatggggtgtagaagggtgtatgagaataaatggtgtctatgtaacattttcc 42354506  T

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Target: chr8; HSP #17
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 9122269 - 9122363
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||| ||||||| |||||||  ||||||||||| ||||    
T  9122269 gcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagagtgtatgggaataaagaatgtctatgtatcatt 9122363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 30479482 - 30479396
Alignment:
Q  14 acactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||  | |||||| |||||||||||||||    
T  30479482 acactttctctttcttcttctcttctctcttcctaatacatgaggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 30479396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 16056422 - 16056317
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||  | |||||| |||||||||||||||    
T  16056422 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 16056323  T
Q  101 ttccaa 106  Q
    | ||||    
T  16056322 tcccaa 16056317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 37038563 - 37038663
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcca 105  Q
    |||||| |||||||||| ||||||||||||||||||||||||| | |||| |||||||||||||||||   |||||| | ||| ||||||||||||||||    
T  37038563 gcacaagcacactttctatttcctctcctcttctctcttcctagtgcatggggtgtacaagggtgtatagaaataaagggtgtttatgtaacattttcca 37038662  T
Q  106 a 106  Q
    |    
T  37038663 a 37038663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 24307814 - 24307715
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||  | |||||| |||||||||||||||    
T  24307814 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 24307715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 1179956 - 1179870
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctat 92  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| | |||| ||||||| |||||||||    
T  1179956 gcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaaggatatatgggaataaaggatgtctat 1179870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 44507093 - 44507010
Alignment:
Q  16 actttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    ||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||||||| ||| ||||||||||| ||||    
T  44507093 actttctcttttctctcatcttctctcttcctaatgcatggggtgtacaagggtgtatgagaat-aaatatgtctatgtatcatt 44507010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 34307295 - 34307394
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| ||||||||||||||||||  ||| ||||||||||||||||||  | |||||| |||||||||||||||    
T  34307295 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 34307394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 20074963 - 20074902
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgta 62  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  20074963 accctgcacaagcacactttctctttcctcttctcttctctcttcctagttcatgaggtgta 20074902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 42710301 - 42710216
Alignment:
Q  15 cactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||||||||| |||||||||||||||||||||||  ||| |||||||||||||||||| ||||||| | ||||| |||| ||||    
T  42710301 cactttctcttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaagggtgtctgtgtatcatt 42710216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 40467784 - 40467883
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcca 105  Q
    |||||| |||||||||||||||||||| ||||||||||||||| |  ||| |||||||||   | |||| | ||||||| ||||||||||||||||||||    
T  40467784 gcacaagcacactttctctttcctctcatcttctctcttcctagtctatggggtgtacaaaaatttatggggataaaaggtgtctatgtaacattttcca 40467883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 15048203 - 15048099
Alignment:
Q  1 accctgcacaatcacactttctctttcc-tctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacat 99  Q
    |||| |||||| ||||||||||||||   ||||||||||||||||||||||  ||| | |||||||||||||||  ||||||| | ||||||| ||||||    
T  15048203 accccgcacaagcacactttctctttttatctcctcttctctcttcctaatgtatgggatgtacaagggtgtatcggaataaagggtgtctatataacat 15048104  T
Q  100 tttcc 104  Q
    |||||    
T  15048103 tttcc 15048099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 42221601 - 42221697
Alignment:
Q  8 acaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||| ||||||||||||||| |||| ||||||||||||| |||  ||  ||||||||||||||||||  |||||| ||||| ||| |||||||||||    
T  42221601 acaagcacactttctctttcatctcatcttctctcttccaaatatatagggtgtacaagggtgtatgtaaataaaggatgtttatataacattttcc 42221697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 15258950 - 15258847
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||    ||  | |||||||  |||||||  |||||| | |||||||||||||||    
T  15258950 accctgcacaagcacattttctctttcctctcctcttctctcttcctagaatataggatgtacaaaagtgtatggaaataaagggtgtctatgtaacatt 15258851  T
Q  101 ttcc 104  Q
    ||||    
T  15258850 ttcc 15258847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 10621103 - 10621014
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcca 105  Q
    |||||| |||||||||||||| |||||||||||||||||||||||  |||          || |||||| ||||||||||||||||||||||||||||||    
T  10621103 gcacaagcacactttctcttttctctcctcttctctcttcctaatatatg----------ggatgtatgggaataaaagatgtctatgtaacattttcca 10621014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 25838275 - 25838370
Alignment:
Q  8 acaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttc 103  Q
    |||| |||||||| ||||| |||||||||||||| || |||||  ||  ||||||||||| ||||||  |||||| ||| ||||||||||||||||    
T  25838275 acaagcacactttttcttttctctcctcttctcttttgctaatgtatagggtgtacaaggttgtatggcaataaaggatatctatgtaacattttc 25838370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 16383456 - 16383521
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaag 66  Q
    |||| ||||||  |||||||||||||| ||| |||||||||||||||||| |||| ||||||||||    
T  16383456 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatacatggggtgtacaag 16383521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 17443917 - 17444005
Alignment:
Q  14 acactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatttt 102  Q
    |||||||||||||| ||| |||||||||||||| | | |||||| ||||||||| |||||    ||||| | |||||||||||||||||    
T  17443917 acactttctctttcatcttctcttctctcttcccagtgcatgagttgtacaaggatgtattcttataaagggtgtctatgtaacatttt 17444005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 14055599 - 14055532
Alignment:
Q  15 cactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaa 82  Q
    |||||| ||||||||||  |||||||||||| ||||  ||||||| ||||| ||||||||||||||||    
T  14055599 cactttttctttcctctgatcttctctcttcttaatgaatgaggtatacaaaggtgtatgagaataaa 14055532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 30183884 - 30183794
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    ||||||||||||||| | || |||||| |||||| |||  ||| |||||||||| |||||||  |||||| ||||||||| |||||||||||    
T  30183884 cacactttctctttcat-tcatcttctttcttccaaatatatggggtgtacaagagtgtatgtaaataaaggatgtctatctaacattttcc 30183794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 35965801 - 35965700
Alignment:
Q  3 cctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatttt 102  Q
    ||||||||| ||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35965801 cctgcacaagcacactttctctttcctctcctcttttcttttcttaattcatgaggtgtacaagggtgtatgagaataaaaggtgtctatgtaacatttt 35965702  T
Q  103 cc 104  Q
    ||    
T  35965701 cc 35965700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 24699975 - 24699873
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||| || |||||||||| || | ||||||||||||||||||||||||||||||||    
T  24699975 accctgtacaaacacactttctctttcctctcctcttctctcttcctagtttatgaggtgtataa-gatgtatgagaataaaagatgtctatgtaacatt 24699877  T
Q  101 ttcc 104  Q
    ||||    
T  24699876 ttcc 24699873  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 30801748 - 30801651
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    ||||| |||| ||||||||||||||| ||||||||||||||| | |||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  30801748 cacaagcacattttctctttcctctcatcttctctcttcctagtacatggggtgtacaagggtgtatgagaataaaaggtgtctatgtaacattttcc 30801651  T

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Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 8076472 - 8076575
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||| | |||| |||||||||  ||||||||||||||| | |||||||||||||||    
T  8076472 accccgcacaagcacactttctctttcctctcctcttctctcttcctagtgcatggggtgtacaaaagtgtatgagaataaatggtgtctatgtaacatt 8076571  T
Q  101 ttcc 104  Q
    ||||    
T  8076572 ttcc 8076575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 20764929 - 20764833
Alignment:
Q  8 acaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||| |||||||||||||| ||||| |||||||||||||||||  ||| |||||||||||||||||||||||||| | |||||||||||||||||||    
T  20764929 acaagcacactttctcttttctctcatcttctctcttcctaatgtatggggtgtacaagggtgtatgagaataaatggtgtctatgtaacattttcc 20764833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 11347943 - 11347840
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||||| || |||||||||||||| |||||||||||||||||||||||  ||| |||||| ||||||||||| ||||||| | |||||||||| ||||    
T  11347943 accctgcataagcacactttctcttttctctcctcttctctcttcctaatgtatggggtgtataagggtgtatgggaataaagggtgtctatgtaccatt 11347844  T
Q  101 ttcc 104  Q
    ||||    
T  11347843 ttcc 11347840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 33644279 - 33644378
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||| | |||||||||| ||||    
T  33644279 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtataagggtgtatgggaataaagggtgtctatgtatcatt 33644378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 36331350 - 36331247
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||  | |||||||||| |||||||||||    
T  36331350 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaagatgtatatgtaacatt 36331251  T
Q  101 ttcc 104  Q
    ||||    
T  36331250 ttcc 36331247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 36707437 - 36707350
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||  |||||| ||||||||| |||||||||| ||||    
T  36707437 cacactttctcttttctctcctcttctctcttcctaatgcatgaggtgtacaagaatgtatgggaataaaaggtgtctatgtatcatt 36707350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 51419381 - 51419278
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||| |||||||||||||||  ||| ||||||||||||||||||  |||||||| ||| |||||||||||    
T  51419381 accccgcacaagcacactttctcttttctctcctattctctcttcctaatgtatggggtgtacaagggtgtatggaaataaaaggtgtttatgtaacatt 51419282  T
Q  101 ttcc 104  Q
    ||||    
T  51419281 ttcc 51419278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 53982090 - 53982189
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||| ||||||| | |||||||||| ||||    
T  53982090 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaaggttgtatgggaataaagggtgtctatgtatcatt 53982189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 54868916 - 54868817
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||||||||| |||  ||||||||||||||||||  |||||||| |||||||||| ||||    
T  54868916 accccgcacaatcacactttctcttttctctcatcttctctcttcctaatgcatagggtgtacaagggtgtatggaaataaaaggtgtctatgtatcatt 54868817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 14623854 - 14623757
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    ||||| ||||||||||||||| ||| |||||||||||| ||| | ||||||||||| |||| |||||||||||||| | |||||||||||||||||||    
T  14623854 cacaagcacactttctctttcatcttctcttctctctttctagtgcatgaggtgtagaaggatgtatgagaataaatggtgtctatgtaacattttcc 14623757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 35536711 - 35536808
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    ||||| ||||||| ||||||| ||| |||||||||||||||| | |||| |||||| ||||||||||||||||||| | |||||||||||||||||||    
T  35536711 cacaagcacacttcctctttcatcttctcttctctcttcctagtgcatggggtgtagaagggtgtatgagaataaatggtgtctatgtaacattttcc 35536808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 49607499 - 49607592
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    ||||| |||||||||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||| ||||||| | |||||||||| ||||    
T  49607499 cacaagcacactttctcttttctctcctcttttctcttcctaatgcatgacgtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 49607592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 42823205 - 42823293
Alignment:
Q  16 actttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||||||||||| | | |||||||||||||||||| |||||||||||||||||||||||  | |||||| |||||||||||||||||||    
T  42823205 actttctctttcttattctcttctctcttcctaatacatgaggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 42823293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 9563080 - 9563177
Alignment:
Q  3 cctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    ||||||||| |||||||||||| | ||||||||||||||||||||||| |||||| ||||||| |||||||| ||||||| | | |||||||| ||||    
T  9563080 cctgcacaaacacactttctctcttctctcctcttctctcttcctaatgcatgagttgtacaaaggtgtatgggaataaagggtatctatgtatcatt 9563177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 21746202 - 21746106
Alignment:
Q  8 acaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||| ||||||||||||||| |||| ||||||||||||| |||  ||||||||||||||||||||||  |||||| |||||| |||||| |||||||    
T  21746202 acaagcacactttctctttcatctcatcttctctcttccaaatatatgaggtgtacaagggtgtatgtaaataaatgatgtccatgtaatattttcc 21746106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 45058559 - 45058471
Alignment:
Q  16 actttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||||||||||| ||| |||||||||||||||||| |||| ||||||||| ||||||||  | |||||| |||||||||||||||||||    
T  45058559 actttctctttcttcttctcttctctcttcctaatacatggggtgtacaatggtgtatgcaattaaaaggtgtctatgtaacattttcc 45058471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 31456768 - 31456867
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| |||||||||| |||||||||||| |||| |||||||||||||| ||| ||||||| | ||| |||||| ||||    
T  31456768 accccgcacaagcacactttctcttttctctcctcttttctcttcctaatgcatggggtgtacaagggtgcatgggaataaagggtgtttatgtatcatt 31456867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 35093671 - 35093770
Alignment:
Q  8 acaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttccaat 107  Q
    |||| ||||||||||||| | |||  | ||||||||||||| | |||||| ||||||| |||||||||||||||| |||||||| |||||||||||||||    
T  35093671 acaagcacactttctcttgcatctttttttctctcttcctagtgcatgagatgtacaaaggtgtatgagaataaatgatgtctaggtaacattttccaat 35093770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 41189785 - 41189682
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| |||||||||||| ||||||||||  |||  ||||||||| |||||||  |||||| | |||||||||||||||    
T  41189785 accccgcacaagcacactttctcttttctctcctcttctttcttcctaatgtatggagtgtacaagagtgtatggaaataaagggtgtctatgtaacatt 41189686  T
Q  101 ttcc 104  Q
    ||||    
T  41189685 ttcc 41189682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 43746424 - 43746519
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatttt 102  Q
    ||||| |||| |||||||||| ||||||||||| |||||||| | |||||||||||||||||||||||| || ||| | ||| |||||||||||||    
T  43746424 cacaaacacaatttctctttcatctcctcttctttcttcctagtgcatgaggtgtacaagggtgtatgacaacaaagggtgtttatgtaacatttt 43746519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 8956847 - 8956945
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcca 105  Q
    ||||| ||||||| ||||||| ||| |||||||||||||||| | ||   |||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  8956847 cacaagcacacttcctctttcatcttctcttctctcttcctagtgcacagggtgtagaagggtgtatgagaataaatgctgtctatgtaacattttcca 8956945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 26141547 - 26141448
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttct--ctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    ||||| |||||||||||||| ||||||||||||  |||||||||||  ||| |||||||||| |||||||  |||||| | |||||||||||||||||||    
T  26141547 cacaagcacactttctcttttctctcctcttctttctcttcctaatgtatggggtgtacaagagtgtatggaaataaagggtgtctatgtaacattttcc 26141448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 33118860 - 33118768
Alignment:
Q  13 cacactttctctttcctctcctc-ttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    ||||||||||||||||||||||| |||||||| |||| | |||| ||||||||||||||||||  |||||| | |||||| ||||||||||||    
T  33118860 cacactttctctttcctctcctccttctctctccctagtgcatggggtgtacaagggtgtatggaaataaagggtgtctacgtaacattttcc 33118768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 47531944 - 47532047
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||| |||||||||||||||  |||   |||||||| ||||||| ||||||| | ||| |||||||||||    
T  47531944 accccgcacaagcacactttctcttttctctcctattctctcttcctaatgtatggaatgtacaagtgtgtatgggaataaagggtgtttatgtaacatt 47532043  T
Q  101 ttcc 104  Q
    ||||    
T  47532044 ttcc 47532047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 17470490 - 17470583
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    ||||| |||||||||||||| ||||| ||||||||||||||||| |||| | |||||||   |||||||||||||| | |||||||||| ||||    
T  17470490 cacaagcacactttctcttttctctcatcttctctcttcctaatgcatgggatgtacaaatatgtatgagaataaatggtgtctatgtatcatt 17470583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 52629386 - 52629478
Alignment:
Q  8 acaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||||||||||| ||||| ||||||||||||||||| |||| | ||||||||||||||||  |||||  | |||||||||| ||||    
T  52629386 acaagcacactttctcttttctctcatcttctctcttcctaatgcatgggatgtacaagggtgtatggaaataatgggtgtctatgtatcatt 52629478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 26754774 - 26754877
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||| |||||||||||||||||||||||||||||||    ||  ||||||||| ||||||||  ||||||   |||||||||||||||    
T  26754774 accccgcacaagcacattttctctttcctctcctcttctctcttcctagaatatagggtgtacaaaggtgtatggaaataaagagtgtctatgtaacatt 26754873  T
Q  101 ttcc 104  Q
    ||||    
T  26754874 ttcc 26754877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 39670102 - 39670188
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacat 99  Q
    ||||||| |||||| |||||||||||||||||| ||||  ||||| |||||||||||||| |  |||||| ||||||| ||||||||    
T  39670102 cacacttcctcttttctctcctcttctctcttcttaatgtatgagatgtacaagggtgtacggaaataaatgatgtctgtgtaacat 39670188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 25395348 - 25395256
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    ||||| |||| |||||||||| ||| ||||| |||||| ||| | |||| ||||||||| | |||||||| |||||||||||||||||||||||    
T  25395348 cacaaacacattttctctttcatcttctcttttctctttctagtacatg-ggtgtacaaagatgtatgaggataaaagatgtctatgtaacatt 25395256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 48375727 - 48375626
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||| |||||||||||||||||||||||||||||||    ||  ||||||||| | ||||||  |||||| | |||||||||||||||    
T  48375727 accccgcacaagcacattttctctttcctctcctcttctctcttcctagaatatagggtgtacaaagatgtatggaaataaagggtgtctatgtaacatt 48375628  T
Q  101 tt 102  Q
    ||    
T  48375627 tt 48375626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 1758471 - 1758404
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatga 75  Q
    ||||| |||| |||||||||| |||||||||||||||||||||| |||| ||||||||| |||||||||    
T  1758471 cacaaacacattttctctttcatctcctcttctctcttcctaatgcatg-ggtgtacaaaggtgtatga 1758404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 11095356 - 11095289
Alignment:
Q  33 ctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    ||||| |||||||||||| |||  |||||||||||||||||||||||||| | |||||||||| ||||    
T  11095356 ctcttttctcttcctaatgcatcgggtgtacaagggtgtatgagaataaagggtgtctatgtatcatt 11095289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 13898070 - 13897975
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatttt 102  Q
    ||||| ||||||||||||||| ||| ||||||||||| |||| |  ||| |||||| ||  ||||||||||||||| | ||||||| |||||||||    
T  13898070 cacaagcacactttctctttcatcttctcttctctctccctagtgtatggggtgtagaaaagtgtatgagaataaatggtgtctatctaacatttt 13897975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 27714892 - 27714843
Alignment:
Q  33 ctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaa 82  Q
    |||||||||||||| ||| |||| |||||||||||||||| |||||||||    
T  27714892 ctcttctctcttcccaatacatggggtgtacaagggtgtacgagaataaa 27714843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 48587087 - 48587023
Alignment:
Q  36 ttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    ||||||||||||||| |||| | ||||||||||| |||| ||||||| | |||||||||| ||||    
T  48587087 ttctctcttcctaatgcatgggatgtacaagggtatatgggaataaagggtgtctatgtatcatt 48587023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 25407162 - 25407064
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcca 105  Q
    ||||| ||||||||||||||| |||||||||||||||  |||||  || ||||||| ||   | ||| |||||||| | || |||| ||||||||||||    
T  25407162 cacaaacacactttctctttcatctcctcttctctctcactaatgtataaggtgtataaatatatataagaataaagggtgactatataacattttcca 25407064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 41080792 - 41080833
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttccta 48  Q
    ||||| |||| |||||||||| ||||||||||||||||||||    
T  41080792 cacaagcacattttctctttcatctcctcttctctcttccta 41080833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 11140999 - 11140959
Alignment:
Q  66 gggtgtatgagaataaaagatgtctatgtaacattttccaa 106  Q
    |||||||||||| |||| | |||||||||||||||||||||    
T  11140999 gggtgtatgagactaaagggtgtctatgtaacattttccaa 11140959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 35468876 - 35468770
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| |||| |||| |||||||||||||||| ||| |||||||||||    
T  35468876 accctgcacaaacacactttctctttcctatcctcttctctcttcctagttcatgagatgtataaggatgtatgagaataaaaggtgtatatgtaacatt 35468777  T
Q  101 ttccaat 107  Q
    |||||||    
T  35468776 ttccaat 35468770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 4999535 - 4999436
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| ||||||||||||||  |||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||| ||||    
T  4999535 accccgcacaaacacactttctcttttatctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaaaggtgtctatgtatcatt 4999436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 22343440 - 22343544
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||  | |||||| |||||||||||||||    
T  22343440 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatacatgaggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 22343539  T
Q  101 ttcca 105  Q
    |||||    
T  22343540 ttcca 22343544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 19329921 - 19330020
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| | |||||||||| ||||    
T  19329921 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 19330020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 32951514 - 32951415
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||  | |||||||||| ||||    
T  32951514 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatacatggggtgtacaagggtgtatgagaataaggggtgtctatgtatcatt 32951415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 31735961 - 31736059
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||||| |||||||||||||| |||||||||||||||||||||||  ||| |||||||||||||||||| ||||||||| | ||||| |||||||||||    
T  31735961 gcacaagcacactttctcttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaaaggtatctatctaacattttcc 31736059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 8080404 - 8080305
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||| | |||| |||||||||||||||||| ||||||| | |||||||||| ||||    
T  8080404 accccgcacaagcacactttctcttttctctcctcttctctcttcctattgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 8080305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 21234480 - 21234583
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||| |||||||| |||||||| | |||||||||||||  ||| ||||||||| |||||||||||||||||| |||||||||||||||    
T  21234480 accccgcacaagcacattttctcttacctctcctttcctctcttcctaatgtatggggtgtacaatggtgtatgagaataaaaggtgtctatgtaacatt 21234579  T
Q  101 ttcc 104  Q
    ||||    
T  21234580 ttcc 21234583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 32564447 - 32564344
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||  | ||||| |||||||||||||||     
T  32564447 accccgcacaaatacactttctctttcttcttctcttctctcttcctaatacatgaggtgtacaagggtgtatgcaattaaaatatgtctatgtaacatc 32564348  T
Q  101 ttcc 104  Q
    ||||    
T  32564347 ttcc 32564344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 46033805 - 46033718
Alignment:
Q  18 tttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcca 105  Q
    ||||||||| |||||||||||||| ||||||||  ||| |||||||||||||||||||||||||| | ||||||||||||||||||||    
T  46033805 tttctcttttctctcctcttctctattcctaatgtatggggtgtacaagggtgtatgagaataaatggtgtctatgtaacattttcca 46033718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 35522960 - 35523058
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||||| |||||||||||||| ||||| |||||||||||||||||  ||| |||||||||||||||||| ||||||| | ||| |||||||||||||||    
T  35522960 gcacaagcacactttctcttttctctcttcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaatggtgtttatgtaacattttcc 35523058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 38044276 - 38044381
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| ||||| |||||||||||| |||| ||||||||||||||||||  | |||||| |||||||||||||||    
T  38044276 accccgcacaagtacactttctctttcttcttctcttttctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 38044375  T
Q  101 ttccaa 106  Q
    ||||||    
T  38044376 ttccaa 38044381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 8238292 - 8238395
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||  | ||||||  ||||||||||||||    
T  8238292 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggcgtctatgtaacatt 8238391  T
Q  101 ttcc 104  Q
    ||||    
T  8238392 ttcc 8238395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 11044257 - 11044356
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  ||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||||||   |||||||||| ||||    
T  11044257 accccgcacaagtacactttctctttcctctcatcttctctcttcctaatgcatgaggtgtacaaaggtgtatgaaaataaagagtgtctatgtatcatt 11044356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 38837296 - 38837395
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||| | ||||||||||||||||  |||||| | |||||||||| ||||    
T  38837296 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatgggatgtacaagggtgtatggaaataaagggtgtctatgtatcatt 38837395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 19436196 - 19436114
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgta 95  Q
    |||||||||||||| |||| ||||| |||||||||||| |||| |||||||||||||||||||||||||| | ||||||||||    
T  19436196 cacactttctcttttctcttctcttttctcttcctaatgcatggggtgtacaagggtgtatgagaataaatggtgtctatgta 19436114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 41423778 - 41423864
Alignment:
Q  18 tttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||||||||| |||||||||||||||||||| | |||| ||||||||| |||||||||||||||| | ||| |||||||||||||||    
T  41423778 tttctctttcatctcctcttctctcttcctagtgcatggggtgtacaaaggtgtatgagaataaagggtgtttatgtaacattttcc 41423864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 35137612 - 35137689
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaa 78  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||| | ||||||||||||||||||||    
T  35137612 accccgcacaaacacactttctcttttctctcctcttctctcttcctaatgcatgggatgtacaagggtgtatgagaa 35137689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 41915820 - 41915921
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| ||||||||||||||||||  ||| ||||||||||||||||||  | |||||| |||||||||||||||    
T  41915820 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 41915919  T
Q  101 tt 102  Q
    ||    
T  41915920 tt 41915921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 40957793 - 40957885
Alignment:
Q  8 acaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||| |||||  | |||||||||| ||||    
T  40957793 acaagcacactttctcttttctctcatcttctctcttcctaatgcatggggtgtacaagggtgtatgaaaataatgggtgtctatgtatcatt 40957885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 7389468 - 7389566
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| |||||||  |||||||||||||| |||| ||||||| |||||||||| ||||||| |||||||||||| ||||    
T  7389468 accccgcacaagcacactttctcttttctctcctactctctcttcctaatacatggggtgtac-agggtgtatgggaataaaggatgtctatgtatcatt 7389566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 26296723 - 26296828
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| | || ||||||||| |||||||||||||||||| ||||  ||||||||||||||||||||||  |||| | | |||||| ||||||||    
T  26296723 accccgcacaagcgcattttctcttttctctcctcttctctcttcttaatgtatgaggtgtacaagggtgtatggaaatatatggtgtctacgtaacatt 26296822  T
Q  101 ttccaa 106  Q
    ||||||    
T  26296823 ttccaa 26296828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 3784079 - 3784155
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaa 82  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||||  |||||| |||||||    
T  3784079 gcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagaatgtatgtgaataaa 3784155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 16374839 - 16374743
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttc 103  Q
    ||||| ||||| ||||||||| |||| | |||||||||||||||  |||  |||||||| |||||||||||||||| | ||||||||||||||||||    
T  16374839 cacaagcacacattctctttcatctctttttctctcttcctaatgtatggagtgtacaaaggtgtatgagaataaagggtgtctatgtaacattttc 16374743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 38267119 - 38267218
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||| | ||||| | ||||||||  |||||| ||| |||||||| ||||    
T  38267119 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatgggatgtacgaaggtgtatggaaataaatgatatctatgtatcatt 38267218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 40846134 - 40846031
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| |||||||||||||||||   ||||| ||||||||||||||||  | |||||| | |||||||||||||    
T  40846134 accccgcacaaatacactttctctttcttcttctcttctctcttcctaaaagatgagatgtacaagggtgtatgcaattaaaaggtatctatgtaacatt 40846035  T
Q  101 ttcc 104  Q
    ||||    
T  40846034 ttcc 40846031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 1766795 - 1766702
Alignment:
Q  8 acaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattt 101  Q
    |||| ||||||||||||||||||||||||||||||||| || |  ||||||| |||||| || |||||||| |||   ||||||||||||||||    
T  1766795 acaagcacactttctctttcctctcctcttctctcttcgtagtatatgaggtatacaagagtatatgagaacaaagtgtgtctatgtaacattt 1766702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 7727985 - 7728086
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  ||||||||| |||| ||| ||||||||||||||||||  ||| ||||||||||| ||||||  | |||||| |||||||||||||||    
T  7727985 accccgcacaagtacactttctgtttcttcttctcttctctcttcctaatatatggggtgtacaaggatgtatgcaattaaaaggtgtctatgtaacatt 7728084  T
Q  101 tt 102  Q
    ||    
T  7728085 tt 7728086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 3694451 - 3694519
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatg 74  Q
    |||||| |||||||||||||| ||||||||||||||||||| ||| |||| |||||||||| |||||||    
T  3694451 gcacaagcacactttctcttttctctcctcttctctcttcccaatgcatggggtgtacaagagtgtatg 3694519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 18207264 - 18207359
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatttt 102  Q
    ||||| ||||||||||||||| |||||||||||||||||||| |  ||   |||||||||||||||||| |||||| | | ||||| |||||||||    
T  18207264 cacaagcacactttctctttcatctcctcttctctcttcctagtggatagagtgtacaagggtgtatgataataaagggtatctatctaacatttt 18207359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 46374807 - 46374742
Alignment:
Q  39 tctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    ||||||||||||  ||| |||||||||||||||||| ||||||| | |||||||||||||||||||    
T  46374807 tctcttcctaatgtatggggtgtacaagggtgtatgggaataaatggtgtctatgtaacattttcc 46374742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 12310985 - 12311088
Alignment:
Q  3 cctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatttt 102  Q
    |||| |||| |||| ||| |||||||| |||||||||||||||||| |  |  || ||||||| ||||||||  |||||| | |||||||||||||||||    
T  12310985 cctgaacaagcacattttatctttcctttcctcttctctcttcctagtatacaagatgtacaaaggtgtatggaaataaagggtgtctatgtaacatttt 12311084  T
Q  103 ccaa 106  Q
    ||||    
T  12311085 ccaa 12311088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 27744318 - 27744227
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||| ||||||| ||||||||||||||||||||||| | |||| | ||||||||| | |||| ||||||| | ||| ||| |||||||||||    
T  27744318 cacattttctctatcctctcctcttctctcttcctagtgcatgggatgtacaaggatatatgggaataaatggtgtttatataacattttcc 27744227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 32045931 - 32046018
Alignment:
Q  16 actttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttc 103  Q
    ||||||| |||| |||| ||||||||||| | |||  ||||| ||||||||||||||||  ||||||  |||||||||||||||||||    
T  32045931 actttctttttcatctcatcttctctctttcaaatatatgagatgtacaagggtgtatgtaaataaagaatgtctatgtaacattttc 32046018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36208252 - 36208299
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttccta 48  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||    
T  36208252 accctgcacaagcacattttctctttcctctcctcttctctcttccta 36208299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 36362125 - 36362192
Alignment:
Q  33 ctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    ||||| |||||||||||| |||| | |||||||||||||||||||||||| | |||||||||| ||||    
T  36362125 ctcttttctcttcctaatacatgggatgtacaagggtgtatgagaataaagggtgtctatgtatcatt 36362192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 3434666 - 3434730
Alignment:
Q  36 ttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    ||||||||||||||| |||| ||||||||||| |||||| ||||||| | |||||||||| ||||    
T  3434666 ttctctcttcctaatgcatggggtgtacaaggctgtatgggaataaagggtgtctatgtatcatt 3434730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 39255932 - 39255844
Alignment:
Q  14 acactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatttt 102  Q
    |||||||||||||| ||||||||||||||||||   |  ||    ||||||||||||||||| |||||| | |||||||||||||||||    
T  39255932 acactttctctttcatctcctcttctctcttcccggtggatagaatgtacaagggtgtatgataataaagggtgtctatgtaacatttt 39255844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 10343572 - 10343537
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttccta 48  Q
    ||||||||||||||||||||||||||||||||||||    
T  10343572 cacactttctctttcctctcctcttctctcttccta 10343537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 36361914 - 36361847
Alignment:
Q  33 ctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    ||||| |||||||||||| ||||   |||||||||||||||||||||||| | |||||||||| ||||    
T  36361914 ctcttttctcttcctaatacatggaatgtacaagggtgtatgagaataaagggtgtctatgtatcatt 36361847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 45223138 - 45223222
Alignment:
Q  18 tttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatttt 102  Q
    |||||||||| |||| ||||||||||| | |||  ||| ||||||||| | ||||||  |||||| ||||||||||| |||||||    
T  45223138 tttctctttcatctcatcttctctctttcaaatatatggggtgtacaaagatgtatgtaaataaaggatgtctatgtgacatttt 45223222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 2318249 - 2318160
Alignment:
Q  16 actttctctttcctctcctcttctctct-tc-ctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttc 103  Q
    |||||||||||| |||| |||||||||| || ||||| ||||  |||||||| ||||||||  ||||||   ||||||||||||||||||    
T  2318249 actttctctttcatctcatcttctctctctctctaatgcatggagtgtacaaaggtgtatggaaataaagtgtgtctatgtaacattttc 2318160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 31976327 - 31976431
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| |||||||||||||||||||||||  ||| |||||||||||||||||||||||||| | |||||||||||||||    
T  31976327 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgagaataaatggtgtctatgtaacatt 31976426  T
Q  101 ttcca 105  Q
    |||||    
T  31976427 ttcca 31976431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 4231627 - 4231737
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||  | |||||| |||||||||||||||    
T  4231627 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 4231726  T
Q  101 ttccaattttt 111  Q
    |||||||||||    
T  4231727 ttccaattttt 4231737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 11427702 - 11427796
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||| | |||||||||| ||||    
T  11427702 gcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcatt 11427796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 17598633 - 17598732
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||  |||||||| |||||||||| ||||    
T  17598633 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatggaaataaaaggtgtctatgtatcatt 17598732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 31110782 - 31110679
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    ||||||||||| |||||||||||||| |||| ||||||||||||||||||  ||| ||||||||| ||||||||  |||||| |||||||||||||||||    
T  31110782 accctgcacaagcacactttctcttttctctactcttctctcttcctaatgtatggggtgtacaaaggtgtatggaaataaaggatgtctatgtaacatt 31110683  T
Q  101 ttcc 104  Q
    ||||    
T  31110682 ttcc 31110679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 22880679 - 22880580
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| | ||| |||||| ||||    
T  22880679 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatacatggggtgtacaagggtgtatgggaataaatggtgtatatgtatcatt 22880580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 32869757 - 32869856
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||| ||||||| | |||||||||| ||||    
T  32869757 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcatt 32869856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 15990063 - 15989958
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| ||||||||||||||||||  ||| ||||||||||||||||||  | |||||| |||||||||||||||    
T  15990063 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 15989964  T
Q  101 ttccaa 106  Q
    ||||||    
T  15989963 ttccaa 15989958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 31953045 - 31952948
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    ||||| ||||||||||||||| ||| |||||||||||||||| | |||| |||||| |||| |||||||||||||| | |||||||||||||||||||    
T  31953045 cacaaacacactttctctttcatcttctcttctctcttcctagtgcatggggtgtagaaggatgtatgagaataaatggtgtctatgtaacattttcc 31952948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 29857918 - 29858005
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||||||||||| |||| |||||||||||||||||| |||| |||||||||||||||||| ||||||| | |||||||||| ||||    
T  29857918 cacactttctcttttctcttctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaatggtgtctatgtatcatt 29858005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 30341381 - 30341278
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| ||||||||||||||||||  ||| ||||||||||||||||||  | |||||| |||||||||||||||    
T  30341381 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 30341282  T
Q  101 ttcc 104  Q
    ||||    
T  30341281 ttcc 30341278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 15508045 - 15507942
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| ||||||||||||||||||  ||| ||||||||||| ||||||  | |||||| |||||||||||||||    
T  15508045 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatatatggggtgtacaaggatgtatgcaattaaaaggtgtctatgtaacatt 15507946  T
Q  101 ttcc 104  Q
    ||||    
T  15507945 ttcc 15507942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 28536503 - 28536408
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatttt 102  Q
    ||||| ||||||||||||||  ||| |||||| ||||||||| | |||| ||||||||||||||||||| |||||| |||||| ||||||||||||    
T  28536503 cacaagcacactttctcttttatcttctcttccctcttcctactgcatggggtgtacaagggtgtatgaaaataaatgatgtcgatgtaacatttt 28536408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 946467 - 946554
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||||||||||| ||||||||||||||||||||||| |||||| ||||||||  ||||||| |||||||  |||| ||||| ||||    
T  946467 cacactttctcttttctctcctcttctctcttcctaatgcatgagatgtacaagaatgtatgacaataaaaagtgtcaatgtatcatt 946554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 23128142 - 23128065
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaag 84  Q
    ||||| |||||||||||||| |||||||||| |||||||||||| |||| | ||||||||||||||||  ||||||||    
T  23128142 cacaagcacactttctcttttctctcctcttttctcttcctaatgcatgggatgtacaagggtgtatggaaataaaag 23128065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 15832658 - 15832755
Alignment:
Q  3 cctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||||||  ||| |||||||||  ||||||||||| |||||||||| |||| |||||||||||||||||  ||||||| | |||||| ||| ||||    
T  15832658 cctgcacaaatacattttctcttttttctcctcttctatcttcctaatgcatggggtgtacaagggtgtattggaataaagggtgtctacgtatcatt 15832755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 30870093 - 30870193
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||| ||||||||||||||||||||||||||| ||| |  ||  ||||||||| ||||||||| |||||| | ||||||| |||||||    
T  30870093 accccgcacaagcacattttctctttcctctcctcttctctctttctagtatatagggtgtacaaaggtgtatgaaaataaagggtgtctat-taacatt 30870191  T
Q  101 tt 102  Q
    ||    
T  30870192 tt 30870193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 22422043 - 22421996
Alignment:
Q  58 gtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcca 105  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||    
T  22422043 gtgtacaagggtgtatgagaataaatggtgtctatgtaacattttcca 22421996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 31109408 - 31109351
Alignment:
Q  14 acactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgt 71  Q
    ||||||||||||| |||||||||| |||||||||||| |||| ||| |||||||||||    
T  31109408 acactttctcttttctctcctcttttctcttcctaatgcatggggtatacaagggtgt 31109351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 6209474 - 6209422
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaa 65  Q
    |||||||||||||| ||||||||||||||||||||||| |||| | |||||||    
T  6209474 cacactttctcttttctctcctcttctctcttcctaatgcatgggatgtacaa 6209422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 12732573 - 12732663
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||| |||||||||| |||||||||||||||| ||| | ||| ||||| ||||   |||||| |||  ||||||||||||||||||||||||    
T  12732573 cacattttctctttcatctcctcttctctctttctagtacataaggtgcacaaaaatgtatg-gaaataaagatgtctatgtaacattttcc 12732663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 9379727 - 9379659
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatga 75  Q
    ||||| |||| |||||||||| ||| ||||| |||||||||||| ||| |||| ||||||| |||||||    
T  9379727 cacaaacacattttctctttcatcttctcttttctcttcctaatgcataaggtatacaaggatgtatga 9379659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 20073537 - 20073429
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||| | ||||| ||||||||||||||||| |||||||| |||||||    
T  20073537 accctgcacaagcacactttctatttcctctcctcttctctcttcctagttcatgagatttacaaaggtgtatgagaataaaaaatgtctatctaacatt 20073438  T
Q  101 ttccaattt 109  Q
    |||| ||||    
T  20073437 ttcctattt 20073429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 18520905 - 18520806
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| ||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||| |||||| | |||||||||| ||||    
T  18520905 accccgcacaagcacactttctcttttatctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgaaaataaagggtgtctatgtatcatt 18520806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 36732963 - 36732872
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctat 92  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| | |||||||    
T  36732963 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggtgtctat 36732872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 40145486 - 40145585
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| |||||||||||| | |||||||||| ||||    
T  40145486 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcacgaggtgtacaagggtatatgagaataaagggtgtctatgtatcatt 40145585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 6679777 - 6679879
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||| ||||||||| |||||||||||||||||||||||  ||  ||||||||||||||||||| |||||| |||||||||||||||||    
T  6679777 accccgcacaaacacattttctcttttctctcctcttctctcttcctaatgtatagggtgtacaagggtgtatgacaataaatgatgtctatgtaacatt 6679876  T
Q  101 ttc 103  Q
    |||    
T  6679877 ttc 6679879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 26720600 - 26720698
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||||| |||||||||||||| |||| ||||||||||||||||||  ||| ||||||| |||||||||||||||||| ||||||||| |||||||||||    
T  26720600 gcacaagcacactttctcttttctcttctcttctctcttcctaatgtatggggtgtactagggtgtatgagaataaatgatgtctatataacattttcc 26720698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 26990349 - 26990447
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||||| |||||||||||||| |||| ||||||||||||||||||  ||| ||||||| |||||||||||||||||| ||||||||| |||||||||||    
T  26990349 gcacaagcacactttctcttttctcttctcttctctcttcctaatgtatggggtgtactagggtgtatgagaataaatgatgtctatataacattttcc 26990447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 31009072 - 31009170
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||||| |||||||||| |||||||| |||||||||||||||| | |||| ||||||||| |||||||||||||||| | |||||||||||||||||||    
T  31009072 gcacaagcacactttctatttcctcttctcttctctcttcctagtgcatggggtgtacaaaggtgtatgagaataaagggtgtctatgtaacattttcc 31009170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 33149654 - 33149560
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| ||||||||| | |||||||||| ||||    
T  33149654 gcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtacgagaataaagggtgtctatgtatcatt 33149560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 35785283 - 35785377
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||  |||||||| |||||||||| ||||    
T  35785283 gcacaatcacactttctcttttctctcatcttctctcttcctaatgcatggggtgtacaagggtgtatggaaataaaaggtgtctatgtatcatt 35785377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 15409631 - 15409528
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||| ||||||| |||||||||||||||||||||||  ||| |||||||||||||||||| ||||||| | ||| |||||||||||    
T  15409631 accccgcacaagcacactctctcttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgcgaataaagggtgtttatgtaacatt 15409532  T
Q  101 ttcc 104  Q
    ||||    
T  15409531 ttcc 15409528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 35943907 - 35943812
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatttt 102  Q
    ||||| ||||||||||||||||||||||||| |||||||||| | |||| ||||||||||||||||||  |||||||  |||||||||||||||||    
T  35943907 cacaagcacactttctctttcctctcctcttttctcttcctagtgcatggggtgtacaagggtgtatggaaataaaatgtgtctatgtaacatttt 35943812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 2177449 - 2177546
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    ||||| |||| ||||||||||||||||||||||||||||||| | |||  | |||||||||||||||||||||||||  ||||| |||||||||||||    
T  2177449 cacaagcacattttctctttcctctcctcttctctcttcctagtgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 2177546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 2252189 - 2252081
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| ||||||||||||||||||  ||| ||||||||||||||||||  | |||||| |||||||||||||||    
T  2252189 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 2252090  T
Q  101 ttccaattt 109  Q
    |||| ||||    
T  2252089 ttcctattt 2252081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 3921286 - 3921183
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| ||||||||||||||||||  ||| ||||||||||||||||||  | |||||| |||||||||||||||    
T  3921286 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 3921187  T
Q  101 ttcc 104  Q
    ||||    
T  3921186 ttcc 3921183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 2740358 - 2740452
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||| |||||||||||||| |||||| |||||||||||||||| |||| | |||||||||||||||| ||||||| | |||||||||| ||||    
T  2740358 gcacaagcacactttctcttttctctccccttctctcttcctaatgcatgggatgtacaagggtgtatgggaataaagggtgtctatgtatcatt 2740452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 39557531 - 39557455
Alignment:
Q  8 acaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaag 84  Q
    |||||||||||||||||||  |||||||||||||||||||||| ||||||||||||| || | ||||||||||||||    
T  39557531 acaatcacactttctcttttatctcctcttctctcttcctaatacatgaggtgtacatggatctatgagaataaaag 39557455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 39688905 - 39688806
Alignment:
Q  14 acactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttccaatttttaa 113  Q
    |||||||||||||| |||  ||||||||||||||||| |||  ||||||||| ||||||||  | |||||| ||||||||||||||||||| ||||||||    
T  39688905 acactttctctttcttcttttcttctctcttcctaatacatagggtgtacaaaggtgtatgcaattaaaaggtgtctatgtaacattttcctatttttaa 39688806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 13811731 - 13811825
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgta 95  Q
    |||| |||||| |||||||||||||  ||||||||||||||||||||||| |||| | ||||||||| |||||| ||||||| | ||||||||||    
T  13811731 accccgcacaagcacactttctcttctctctcctcttctctcttcctaatgcatgggatgtacaaggatgtatgggaataaatggtgtctatgta 13811825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 14831898 - 14831992
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||| |||||||||| |||  |||||||||||||||||||||| |||| ||||||||||| |||||| ||||||| | |||||||||| ||||    
T  14831898 gcacaagcacactttcttttttttctcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcatt 14831992  T

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Target: chr5; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 33825339 - 33825243
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttc 103  Q
    ||||| ||||||||||||||  ||| |||||||||||||||| | |||| |||||| |||| |||||||||||||| | |||| |||||||||||||    
T  33825339 cacaagcacactttctcttttatcttctcttctctcttcctagtgcatggggtgtagaaggctgtatgagaataaatggtgtcaatgtaacattttc 33825243  T

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Target: chr5; HSP #22
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 36875628 - 36875537
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattt 101  Q
    |||||| ||||||||||||||  |||||||||||||||||||||| |||| |||||||||||||| |    |||||| | ||||||||||||||||    
T  36875628 gcacaagcacactttctcttttttctcctcttctctcttcctaatacatggggtgtacaagggtgga----aataaatggtgtctatgtaacattt 36875537  T

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Target: chr5; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 6260010 - 6259919
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    ||||||||||||||| |||||||||||||||  |||||  ||| | |||||||| ||||||  ||||||| ||| |||||||||||||||||    
T  6260010 cacactttctctttcatctcctcttctctctcactaatgtatgggatgtacaagtgtgtataggaataaaggatatctatgtaacattttcc 6259919  T

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Target: chr5; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 21370083 - 21370186
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||| ||||||||||||||| |||||| |||||||| |  || || ||||||| ||||||||| |||||| | ||| |||||||||||    
T  21370083 accccgcacaaacacattttctctttcctctcatcttctttcttcctagtatataagatgtacaaaggtgtatgaaaataaagggtgtttatgtaacatt 21370182  T
Q  101 ttcc 104  Q
    ||||    
T  21370183 ttcc 21370186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 9603899 - 9603993
Alignment:
Q  8 acaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatttt 102  Q
    |||||||||||||||||||| | || |||||||||||| || | | || | ||||||| |||||||||||||||| | |||||| ||||||||||    
T  9603899 acaatcacactttctctttcatttcgtcttctctcttcttagtgcttgggatgtacaaaggtgtatgagaataaatggtgtctacgtaacatttt 9603993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 31132448 - 31132512
Alignment:
Q  36 ttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    ||||||||| ||||| |||||||||||||||||||||||| |||||| | ||| |||||| ||||    
T  31132448 ttctctctttctaatgcatgaggtgtacaagggtgtatgaaaataaagggtgtttatgtatcatt 31132512  T

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Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28177854 - 28177903
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaat 50  Q
    |||| |||||| |||||||||||||| ||||||||||| |||||||||||    
T  28177854 accccgcacaaacacactttctcttttctctcctcttccctcttcctaat 28177903  T

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Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 16327986 - 16328092
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttccaa 106  Q
    ||||| |||||||| |||||| | | ||||||||||| ||||||  ||| |||||| ||  || ||||| |||||| | ||| ||| ||||||||||||     
T  16327986 cacaagcacactttttctttcattttctcttctctctccctaatatatggggtgtagaaaagtatatgaaaataaatggtgtttatctaacattttccat 16328085  T
Q  107 tttttaa 113  Q
    |||||||    
T  16328086 tttttaa 16328092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42414323 - 42414275
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaa 49  Q
    |||| |||||| |||||||| ||||| || |||||||||||||||||||    
T  42414323 accccgcacaagcacactttatcttttctttcctcttctctcttcctaa 42414275  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 41823961 - 41824065
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| | |||||||||||||||    
T  41823961 accccgcacaagcacactttctcttttctctcttcttctctcttcctaatgcatgaggtgtacaaaggtgtatgagaataaatggtgtctatgtaacatt 41824060  T
Q  101 ttcca 105  Q
    |||||    
T  41824061 ttcca 41824065  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 6034128 - 6034222
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||| ||||    
T  6034128 gcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaaaggtgtctatgtatcatt 6034222  T

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Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 40574865 - 40574964
Alignment:
Q  8 acaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttccaat 107  Q
    |||| |||||||||||||| |||||||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||||    
T  40574865 acaagcacactttctcttttctctcctcttctctcttcctaatatatggggtgtacaagggtgtatgagaataaaaggtgtctatctaacattttacaat 40574964  T

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Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 50052449 - 50052346
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||| | ||| |||||||||| |||||||| ||||||| | |||||||||||||||    
T  50052449 accccgcacaagcacactttctctttcctctcctcttctctcttcctagtgcataaggtgtacaaaggtgtatgggaataaagggtgtctatgtaacatt 50052350  T
Q  101 ttcc 104  Q
    ||||    
T  50052349 ttcc 50052346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 29239971 - 29240068
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    ||||| |||||||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||| ||||||| | |||||||||||||||||||    
T  29239971 cacaagcacactttctctttcctctcctcttctctcttcctagtgcatggggtgtacaagagtgtatgggaataaagggtgtctatgtaacattttcc 29240068  T

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Target: chr4; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 41236426 - 41236525
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| | |||||||||| ||||    
T  41236426 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 41236525  T

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Target: chr4; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 48183070 - 48182971
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| |||||||||||||||||| |||| |||| |||||||||||||||||||||||||| | |||||||||| ||||    
T  48183070 accccgcacaagcacactttctcttttctctcctcttctctcttcttaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcatt 48182971  T

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Target: chr4; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 50813913 - 50813809
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| |||||||||||||||||| |||||| ||||||||||||||||  | |||||| |||||||||||||||    
T  50813913 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatacatgagatgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 50813814  T
Q  101 ttcca 105  Q
    |||||    
T  50813813 ttcca 50813809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 55475270 - 55475374
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||||| ||  |||||||||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||  | |||||| |||||||||||||||    
T  55475270 accctgcataagtacactttctctttcttcttctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 55475369  T
Q  101 ttcca 105  Q
    |||||    
T  55475370 ttcca 55475374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 19670737 - 19670634
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||  | |||||| |||||||||||||||    
T  19670737 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 19670638  T
Q  101 ttcc 104  Q
    ||||    
T  19670637 ttcc 19670634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 18924503 - 18924413
Alignment:
Q  14 acactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||||||||||||| ||| |||||||||||||||||| ||||||||||| |||||||||||  | |||||| |||||||||||||||||||    
T  18924503 acactttctctttcttcttctcttctctcttcctaatacatgaggtgtaaaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 18924413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 56300184 - 56300086
Alignment:
Q  3 cctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattt 101  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||  ||||| ||||||||  ||||||||||||||  ||||||| |||||||||    
T  56300184 cctgcacaaacacactttctctttcctctcctcttctctctttctaatgtatgagatgtacaagattgtatgagaataaagaatgtctacgtaacattt 56300086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 23608320 - 23608413
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    ||||| ||||||||||||||  |||||||||||||||||||||| ||||||||||||| || |||||| ||||||| |||||||||||| ||||    
T  23608320 cacaagcacactttctcttttatctcctcttctctcttcctaatgcatgaggtgtacagggatgtatgggaataaaggatgtctatgtatcatt 23608413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 17983764 - 17983664
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||  | |||||  |||||||||||||||    
T  17983764 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatacatgaggtgtacaagggtgtatgcaattaaaaagtgtctatgtaacatt 17983665  T
Q  101 t 101  Q
    |    
T  17983664 t 17983664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 31910271 - 31910374
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||| |||||||||||||||||  ||| | |||||||| ||||||| ||||||| | |||||||||||||||    
T  31910271 accccgcacaagcacactttctcttttctctcatcttctctcttcctaatgtatgggatgtacaagagtgtatgggaataaatggtgtctatgtaacatt 31910370  T
Q  101 ttcc 104  Q
    ||||    
T  31910371 ttcc 31910374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 42044388 - 42044289
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||| | ||||||||||||||||  |||||| | |||||||||| ||||    
T  42044388 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatgggatgtacaagggtgtatggaaataaagggtgtctatgtatcatt 42044289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 29547967 - 29547877
Alignment:
Q  14 acactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    ||||||| |||||| ||| |||||||||||||||||| |||| ||||||||||||||||||  | |||||| |||||||||||||||||||    
T  29547967 acactttttctttcttcttctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 29547877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 29589748 - 29589658
Alignment:
Q  14 acactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||||||||||||| ||| |||||||||||||||||| ||||||||||||||| |||||||  | |||||| ||||||||||| |||||||    
T  29589748 acactttctctttcttcttctcttctctcttcctaatacatgaggtgtacaagagtgtatgcaattaaaaggtgtctatgtaatattttcc 29589658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 11511483 - 11511385
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| |||| ||||||||||||| |||| |||||||||||||||||||||||  |||||| | |||||||||| ||||    
T  11511483 accccgcacaagcacactttctcttttctcttctcttctctcttcttaatgcatgaggtgtacaagggtgtatggaaataaatg-tgtctatgtatcatt 11511385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 24995128 - 24995029
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||| ||||||||| |||||||||||||||||| |||| |||| ||||||||| |||||||| ||||||| | |||||||||| ||||    
T  24995128 accccgcacaagcacattttctcttttctctcctcttctctcttcttaatgcatggggtgtacaatggtgtatgggaataaagggtgtctatgtatcatt 24995029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 47104629 - 47104723
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattt 101  Q
    ||||| ||||||||||||||| ||||||||||||||||| |||| |||||||||||| ||  |||| ||||||||||  |||||| |||||||||    
T  47104629 cacaaacacactttctctttcatctcctcttctctcttcttaatgcatgaggtgtactagaatgtacgagaataaaaagtgtctacgtaacattt 47104723  T

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Target: chr4; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 50526187 - 50526089
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||||| ||| |||||| ||||||||||||||||||||||||| | |||| |||||||||||||||||   |||||| | ||| |||||||||||||||    
T  50526187 gcacaagcacgctttctatttcctctcctcttctctcttcctagtgcatggggtgtacaagggtgtatagaaataaagggtgtttatgtaacattttcc 50526089  T

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Target: chr4; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 54473554 - 54473473
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaa 82  Q
    |||| |||||| |||||||| ||||| ||||||||||||||||||||||| ||||  ||||||||||||||||| |||||||    
T  54473554 accccgcacaagcacactttatcttttctctcctcttctctcttcctaatacatggagtgtacaagggtgtatgggaataaa 54473473  T

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Target: chr4; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 47986287 - 47986389
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| | | |||||||||||||||||| |||| | ||||||||||||||||  ||| |||| |||||||||||||||    
T  47986287 accccgcacaagtacactttctctttcttattctcttctctcttcctaatacatgggatgtacaagggtgtatg-caattaaaggtgtctatgtaacatt 47986385  T
Q  101 ttcc 104  Q
    ||||    
T  47986386 ttcc 47986389  T

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Target: chr4; HSP #25
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 480461 - 480395
Alignment:
Q  8 acaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatg 74  Q
    |||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||| ||||||||    
T  480461 acaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaaaggtgtatg 480395  T

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Target: chr4; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 28480283 - 28480186
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    ||||| ||||||||||| ||| |||||||||||||||||||| | |||||| ||||||||| |||||    ||||| | |||||||||||||||||||    
T  28480283 cacaaacacactttctccttcatctcctcttctctcttcctagtgcatgagttgtacaaggatgtattcttataaagggtgtctatgtaacattttcc 28480186  T

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Target: chr4; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 28481158 - 28481061
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    ||||| ||||||||||| ||| |||||||||||||||||||| | |||||| ||||||||| |||||    ||||| | |||||||||||||||||||    
T  28481158 cacaaacacactttctccttcatctcctcttctctcttcctagtgcatgagttgtacaaggatgtattcttataaagggtgtctatgtaacattttcc 28481061  T

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Target: chr4; HSP #28
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 28482033 - 28481936
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    ||||| ||||||||||| ||| |||||||||||||||||||| | |||||| ||||||||| |||||    ||||| | |||||||||||||||||||    
T  28482033 cacaaacacactttctccttcatctcctcttctctcttcctagtgcatgagttgtacaaggatgtattcttataaagggtgtctatgtaacattttcc 28481936  T

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Target: chr4; HSP #29
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 48647742 - 48647645
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttc 103  Q
    |||||| |||| ||||||||||||||||||||||||||||||| | |||    ||||||| | ||||| | |||||| ||||||||||||||||||||    
T  48647742 gcacaagcacaatttctctttcctctcctcttctctcttcctagtgcatagaatgtacaaagatgtataaaaataaatgatgtctatgtaacattttc 48647645  T

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Target: chr4; HSP #30
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 29977970 - 29978065
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatttt 102  Q
    ||||| ||||||||||||||| ||| ||||| |||||  |||||  ||| |||||||||| ||||||  ||||||||||| |||||||||||||||    
T  29977970 cacaagcacactttctctttcatcttctcttttctctcactaatgtatggggtgtacaagtgtgtataggaataaaagatatctatgtaacatttt 29978065  T

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Target: chr4; HSP #31
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 32767037 - 32767140
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||||||||  |||||||||||||| ||| ||| |||||||| ||||| |||   |||||||||||||||||  | |||||  |||||||||||||||    
T  32767037 accctgcacaagtacactttctctttcttcttctcctctctctttctaatacatagagtgtacaagggtgtatgcaattaaaatgtgtctatgtaacatt 32767136  T
Q  101 ttcc 104  Q
    ||||    
T  32767137 ttcc 32767140  T

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Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 44536754 - 44536664
Alignment:
Q  14 acactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||||||||||||| ||| |||||||||||||||||| |||  ||||||||||  ||||||  | |||||  |||||||||||||||||||    
T  44536754 acactttctctttcttcttctcttctctcttcctaatacatagggtgtacaagaatgtatgcaattaaaatgtgtctatgtaacattttcc 44536664  T

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Target: chr4; HSP #33
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 29234266 - 29234205
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgta 62  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||    
T  29234266 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgta 29234205  T

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Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 53352587 - 53352496
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| || ||||||||||| ||||||||||||||||||||        |||||||||||||||||||| |||||| | |||||||||| ||||    
T  53352587 accccgcacaagcatactttctcttttctctcctcttctctcttcct--------aggtgtacaagggtgtatgaaaataaagggtgtctatgtatcatt 53352496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 18769062 - 18768972
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaaca 98  Q
    ||||| |||| |||||||||| |||| | || |||||||||||| |||| ||||||||||| ||||||||  |||| ||||| |||||||||    
T  18769062 cacaaacacattttctctttcatctcattttttctcttcctaatacatg-ggtgtacaaggatgtatgagggtaaatgatgtttatgtaaca 18768972  T

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Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 3481787 - 3481826
Alignment:
Q  65 agggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  3481787 agggtgtatgagaataaagggtgtctatgtaacattttcc 3481826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 32939676 - 32939639
Alignment:
Q  8 acaatcacactttctctttcctctcctcttctctcttc 45  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  32939676 acaaacacactttctctttcatctcctcttctctcttc 32939639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 55079721 - 55079680
Alignment:
Q  14 acactttctctttcctctcctcttctctcttcctaattcatg 55  Q
    |||||||||||||| ||| |||||||||||||||||| ||||    
T  55079721 acactttctctttcttcttctcttctctcttcctaatacatg 55079680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 33436121 - 33436029
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatg 93  Q
    |||| |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  33436121 accccgcacaagcacactttctctttcctctcatcttctctcttcctaatgcatgaggtgtacaagggtgtatgagaataaaaggtgtctatg 33436029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 19930841 - 19930742
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| ||||    
T  19930841 accccgcacaaacacactttctcttttctctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaaaggtgtctatgtatcatt 19930742  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 20700906 - 20700998
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcca 105  Q
    |||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||| ||||||| | ||||||||||||||||||||    
T  20700906 cacactttctctttcctctcctcttctctcttcctagtgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtaacattttcca 20700998  T

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Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 17473104 - 17473198
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| | |||||||||| ||||    
T  17473104 gcacaagcacactttctcttttctctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 17473198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 44152012 - 44152108
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttc 103  Q
    ||||| ||||||||||||||| |||||||||||||||||||||| |||||| | |||||||||||||| ||||||||| ||| ||||||||||||||    
T  44152012 cacaagcacactttctctttcatctcctcttctctcttcctaatgcatgagatatacaagggtgtatgcgaataaaaggtgtttatgtaacattttc 44152108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 10249403 - 10249304
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| |||||||||| |||||||||||| |||| |||||||||||||||||||||||||| | |||||||||| ||||    
T  10249403 accccgcacaagcacactttctcttttctctcctcttttctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcatt 10249304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 28863534 - 28863633
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| ||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||| ||||||| | |||||||||| ||||    
T  28863534 accccgcacaagcacactttctcttttatctcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 28863633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 17823874 - 17823979
Alignment:
Q  8 acaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttccaat 107  Q
    |||| ||||||||||||||| |||| ||||||||||||| |||  ||| ||||||||||||||||||  |||||| ||||||||||||||||||||| ||    
T  17823874 acaagcacactttctctttcatctcatcttctctcttccaaatatatggggtgtacaagggtgtatgtaaataaaggatgtctatgtaacattttcctat 17823973  T
Q  108 ttttaa 113  Q
    ||||||    
T  17823974 ttttaa 17823979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 13438422 - 13438521
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||| ||||||| | |||||||||| ||||    
T  13438422 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcatt 13438521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 40701557 - 40701656
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||||||||| |||  ||||||||||||||||||  |||||||| |||||||||| ||||    
T  40701557 accccgcacaatcacactttctcttttctctcatcttctctcttcctaatgcatcgggtgtacaagggtgtatggaaataaaaggtgtctatgtatcatt 40701656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 7465750 - 7465657
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    ||||| ||||||||||||||  |||| ||||||||||||||||| ||||||||||||||||||||||| ||||||| | |||||||||| ||||    
T  7465750 cacaagcacactttctcttttatctcttcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 7465657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 2997508 - 2997408
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||  | |||||  |||||||||||||||    
T  2997508 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatacatgaggtgtacaagggtgtatgcaattaaaaagtgtctatgtaacatt 2997409  T
Q  101 t 101  Q
    |    
T  2997408 t 2997408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 36168915 - 36169019
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| || ||||||||||| ||||||| |||||||||||||||  ||| |||||||||| ||||||||||||||| | ||| |||||||||||    
T  36168915 accccgcacaagcatactttctcttttctctcctattctctcttcctaatgtatggggtgtacaagagtgtatgagaataaagggtgtttatgtaacatt 36169014  T
Q  101 ttcca 105  Q
    |||||    
T  36169015 ttcca 36169019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 13365432 - 13365535
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| |||||||||||||||||| |||| |||||||||||||| |||  | |||||| |||||||||||||||    
T  13365432 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatacatggggtgtacaagggtgaatgcaattaaaaggtgtctatgtaacatt 13365531  T
Q  101 ttcc 104  Q
    ||||    
T  13365532 ttcc 13365535  T

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Target: chr2; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 32505669 - 32505570
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||| ||| |||||||||||||||||| |||| |||| ||||||||||||||||||||||||||   |||||||||| ||||    
T  32505669 accccgcacaagcacactttctattttctctcctcttctctcttcttaatgcatggggtgtacaagggtgtatgagaataaagagtgtctatgtatcatt 32505570  T

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Target: chr2; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 38732433 - 38732536
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| |||||||||||||||||| |||||| ||||||||| ||||||  | |||||| |||||||||||||||    
T  38732433 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatacatgagatgtacaaggatgtatgcaattaaaaggtgtctatgtaacatt 38732532  T
Q  101 ttcc 104  Q
    ||||    
T  38732533 ttcc 38732536  T

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Target: chr2; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 40613923 - 40613820
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||| |||| ||||| ||||  ||| |||||||||||||||||| ||||||| | |||||||||||||||    
T  40613923 accccgcacaagcacactttctcttttctctcctattctttcttcataatgtatggggtgtacaagggtgtatgggaataaagggtgtctatgtaacatt 40613824  T
Q  101 ttcc 104  Q
    ||||    
T  40613823 ttcc 40613820  T

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Target: chr2; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 3034989 - 3034899
Alignment:
Q  16 actttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttccaa 106  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||| | ||||||||  | |||||| |||||||||||||||||||||    
T  3034989 actttctctttcttcttctcttctctcttcctaatacatgaggtgtaccaaggtgtatgcaattaaaaggtgtctatgtaacattttccaa 3034899  T

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Target: chr2; HSP #19
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 9058559 - 9058640
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaa 82  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||| ||||||| |||||||    
T  9058559 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagagtgtatgggaataaa 9058640  T

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Target: chr2; HSP #20
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 41758678 - 41758767
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatttt 102  Q
    |||| |||||||||  ||||||||||||||||||||||  ||| ||||||||||| |||||||||||||||  |||||||||||||||||    
T  41758678 cacattttctcttttatctcctcttctctcttcctaatatatggggtgtacaaggatgtatgagaataaaatgtgtctatgtaacatttt 41758767  T

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Target: chr2; HSP #21
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 43490200 - 43490305
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  ||||||| |||||| ||| |||||||||||||||||| |||  ||||||||||||||||||  | |||||| |||||||||||||||    
T  43490200 accccgcacaagtacactttatctttcttcttctcttctctcttcctaatacatagggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 43490299  T
Q  101 ttccaa 106  Q
    ||||||    
T  43490300 ttccaa 43490305  T

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Target: chr2; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 30915549 - 30915641
Alignment:
Q  8 acaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||  |||||  |||||||||||| ||||    
T  30915549 acaagcacactttctcttttctctcatcttctctcttcctaatacatggggtgtacaagggtgtatggaaataatggatgtctatgtatcatt 30915641  T

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Target: chr2; HSP #23
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 4060776 - 4060863
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||||||| ||| ||||| ||||||||||||||||| |||| ||||||||||||||||||  |||||||||||| |||||| ||||    
T  4060776 cacactttcttttttctctcatcttctctcttcctaatgcatggggtgtacaagggtgtatggaaataaaagatgtttatgtatcatt 4060863  T

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Target: chr2; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 28381671 - 28381577
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||| |||||||||||||| ||||| |||||||||||||||||  ||| ||||||||||| |||||| ||||||| | |||||||||| ||||    
T  28381671 gcacaagcacactttctcttttctctcatcttctctcttcctaatatatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcatt 28381577  T

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Target: chr2; HSP #25
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 33436294 - 33436383
Alignment:
Q  5 tgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    ||||||| ||||||||||||||||| |||||||||||||||||| |||||||          |||||||||||||||||| |||||||||||||||||||    
T  33436294 tgcacaagcacactttctctttcctatcctcttctctcttcctagttcatga----------ggtgtatgagaataaaaggtgtctatgtaacattttcc 33436383  T

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Target: chr2; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 2533202 - 2533305
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||| |||||  |||||||||||||||||| |||  ||| |||||||||||||||||| ||||||| | ||| ||| |||||||    
T  2533202 accccgcacaagcacactttttcttttatctcctcttctctcttcccaatgtatggggtgtacaagggtgtatgggaataaagggtgtatatataacatt 2533301  T
Q  101 ttcc 104  Q
    ||||    
T  2533302 ttcc 2533305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 42257272 - 42257375
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| |||||||||||| ||||||||||  ||| |||||||||| ||||||   |||||| | ||||||||||| |||    
T  42257272 accccgcacaagcacactttctcttttctctcctcttctttcttcctaatgtatggggtgtacaagagtgtatagaaataaagggtgtctatgtaatatt 42257371  T
Q  101 ttcc 104  Q
    ||||    
T  42257372 ttcc 42257375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 45097756 - 45097653
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| |||||||||||||||||| |||  | |||||||| |||||||  | |||||||||| |||||||||||    
T  45097756 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatacatcggatgtacaagagtgtatgcaattaaaagatgtttatgtaacatt 45097657  T
Q  101 ttcc 104  Q
    ||||    
T  45097656 ttcc 45097653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 17820019 - 17819923
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtac-aagggtgtatgagaataaaagatgtctatgtaacattttc 103  Q
    ||||| |||| |||||||||| |||||||||||||||||||||| |||||||||||| || ||| ||||||||| || ||||| ||| ||||||||||    
T  17820019 cacaaacacattttctctttcatctcctcttctctcttcctaatgcatgaggtgtacaaaaggtttatgagaat-aatgatgtttatataacattttc 17819923  T

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Target: chr2; HSP #30
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 38273151 - 38273059
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttccaa 106  Q
    |||||||||||||| ||||||| |||||||||||||||  ||| ||||||||| | |||||||||||||| | ||| ||||||| |||||||||    
T  38273151 cacactttctcttttctctcctattctctcttcctaatgtatggggtgtacaa-gatgtatgagaataaatggtgtttatgtaatattttccaa 38273059  T

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Target: chr2; HSP #31
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 3440058 - 3440161
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||| ||||||||||||||||||||||||||| |||    ||  ||||||||| ||||||||  |||||| | |||||||||||||||    
T  3440058 accccgcacaagcacattttctctttcctctcctcttctctctttctagaatatagggtgtacaaaggtgtatggaaataaagggtgtctatgtaacatt 3440157  T
Q  101 ttcc 104  Q
    ||||    
T  3440158 ttcc 3440161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 15428749 - 15428663
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||||||| ||||||||| |||||| ||| | |||| ||||||||||||||||||||  |||| |||||||||||||||||    
T  15428749 cacattttctctttcatctcctcttttctctttctagtacatg-ggtgtacaagggtgtatgagggtaaatgatgtctatgtaacatt 15428663  T

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Target: chr2; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 38882827 - 38882733
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||| | |||||||||||| ||||  |||| |||||||||||| |||| |||||||||||||||||| ||||||| | | |||||||| ||||    
T  38882827 gcacaagcgcactttctcttttctcttatcttatctcttcctaatgcatggggtgtacaagggtgtatgggaataaatggtctctatgtatcatt 38882733  T

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Target: chr2; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 3738022 - 3738126
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||| ||||| |||||||||||||||| ||||||||    ||  ||||||||| ||||||||| |||| | | |||||||||||||||    
T  3738022 accccgcacaagcacattttctttttcctctcctcttctttcttcctagaatatagggtgtacaaaggtgtatgaaaatatagggtgtctatgtaacatt 3738121  T
Q  101 ttcca 105  Q
    |||||    
T  3738122 ttcca 3738126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 41575218 - 41575278
Alignment:
Q  2 ccctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgta 62  Q
    |||| ||||| ||||||||||||||| |||||||||||||| ||||||| |||||| ||||    
T  41575218 ccctacacaagcacactttctctttcatctcctcttctctcgtcctaatgcatgagatgta 41575278  T

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Target: chr2; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 5574489 - 5574422
Alignment:
Q  33 ctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    ||||| |||||||||||| ||||  ||||||||||||||||| ||||||| | |||||||||| ||||    
T  5574489 ctcttttctcttcctaatgcatggcgtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 5574422  T

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Target: chr2; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 21301515 - 21301420
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatttt 102  Q
    ||||| ||||||||||||||  ||| ||||||| |||||||| | ||||||||||||| | |||||||  |||||| | ||| ||| |||||||||    
T  21301515 cacaaacacactttctcttttatcttctcttctttcttcctagtgcatgaggtgtacatgagtgtatggaaataaagggtgtgtatctaacatttt 21301420  T

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Target: chr2; HSP #38
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 26891518 - 26891421
Alignment:
Q  8 acaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcca 105  Q
    |||| |||| |||||||||||||| ||||||||||||||||||  |   |||||| ||  |||||||| ||| || | ||| ||||||||||||||||    
T  26891518 acaagcacattttctctttcctcttctcttctctcttcctaatatacagggtgtaaaaatgtgtatgaaaattaagggtgtatatgtaacattttcca 26891421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 27864808 - 27864869
Alignment:
Q  39 tctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||||||||| |||| | |||||||||||||||||||||||| | |||| ||||| ||||    
T  27864808 tctcttcctaatacatgggatgtacaagggtgtatgagaataaagggtgtcaatgtatcatt 27864869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 2329354 - 2329382
Alignment:
Q  18 tttctctttcctctcctcttctctcttcc 46  Q
    |||||||||||||||||||||||||||||    
T  2329354 tttctctttcctctcctcttctctcttcc 2329382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 32813326 - 32813430
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| |||||||||||||||||||||||  ||| |||||||||||||||||| ||||||| | |||||||||||||||    
T  32813326 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaatggtgtctatgtaacatt 32813425  T
Q  101 ttcca 105  Q
    |||||    
T  32813426 ttcca 32813430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 41758884 - 41758983
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||| | |||||||||| ||||    
T  41758884 accccgcacaaacacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcatt 41758983  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 45044581 - 45044469
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||| ||||||||| |||| ||||||||||||||||||  ||| |||||||||||||||||||||||||| |||||||| ||||||||    
T  45044581 accccgcacaaacacattttctcttttctcttctcttctctcttcctaatgtatggggtgtacaagggtgtatgagaataaatgatgtctacgtaacatt 45044482  T
Q  101 ttccaatttttaa 113  Q
    ||||  |||||||    
T  45044481 ttcctttttttaa 45044469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 6 - 102
Target Start/End: Complemental strand, 49811543 - 49811447
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatttt 102  Q
    |||||| |||||||||||||| |||||||||||||||||||||||  ||| |||| ||||||||||||||||||||| | |||||||||||||||||    
T  49811543 gcacaagcacactttctcttttctctcctcttctctcttcctaatgtatgtggtgcacaagggtgtatgagaataaagggtgtctatgtaacatttt 49811447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 27564756 - 27564657
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| | |||||||||| ||||    
T  27564756 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 27564657  T

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Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 23597108 - 23597011
Alignment:
Q  5 tgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatttt 102  Q
    ||||||| |||||||| ||||| ||||||| |||||| |||||| |||||||||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  23597108 tgcacaaacacactttatcttttctctcctattctctattcctagttcatgaggtgtccaaggatgtatgagaataaaaaatgtctatgtaacatttt 23597011  T

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Target: chr1; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 50630537 - 50630629
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatg 93  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||  |||||||||||||||||||||||||| | ||||||||    
T  50630537 accccgcacaagcacactttctcttttctctcctcttctctcttcctaatgcatagggtgtacaagggtgtatgagaataaatggtgtctatg 50630629  T

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Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 2581994 - 2582093
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| | ||| |||||| ||||    
T  2581994 accccgcacaagcacactttcttttttctctcctcttctctcttcctaatacatgaggtgtacaagggtgtattagaataaagggtgtttatgtatcatt 2582093  T

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Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 9474897 - 9474798
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||| |||| | ||||||||||||||||||||||||   |||||||||| ||||    
T  9474897 accccgcacaaacacactttctcttttctctcctcttctctcttcctaatgcatgggatgtacaagggtgtatgagaataaagagtgtctatgtatcatt 9474798  T

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Target: chr1; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 37649282 - 37649376
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||| ||||||||| |||| ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| | |||||||||| ||||    
T  37649282 gcacaagcacactttcccttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 37649376  T

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Target: chr1; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 50591021 - 50590917
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||  | |||||| | |||||||||||||    
T  50591021 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtatctatgtaacatt 50590922  T
Q  101 ttcca 105  Q
    |||||    
T  50590921 ttcca 50590917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 51898699 - 51898599
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcca 105  Q
    |||||| |||||||||| ||||||||||||||||||||||||| | |||| |||||||||||||||||   |||||| | ||| ||||||||||||||||    
T  51898699 gcacaagcacactttctatttcctctcctcttctctcttcctagtgcatggggtgtacaagggtgtatagaaataaagggtgtttatgtaacattttcca 51898600  T
Q  106 a 106  Q
    |    
T  51898599 a 51898599  T

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Target: chr1; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 5959021 - 5958918
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| ||||||  |||||||||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||  | |||||  |||||||||||||||    
T  5959021 accccgcacaagtacactttctctttcttcttctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaatgtgtctatgtaacatt 5958922  T
Q  101 ttcc 104  Q
    ||||    
T  5958921 ttcc 5958918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 48716303 - 48716204
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| |||||||| ||||| || |||||||||||||||||||| |||| |||||||||||||||||| ||||||| | |||||||||| ||||    
T  48716303 accccgcacaagcacactttatcttttctttcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 48716204  T

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Target: chr1; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 38632342 - 38632261
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaa 82  Q
    |||| |||||| |||||||| ||||| ||||||||||||||||||||||| |||| |||||||||||||||||| |||||||    
T  38632342 accccgcacaagcacactttttcttttctctcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaa 38632261  T

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Target: chr1; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 41608501 - 41608404
Alignment:
Q  14 acactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttccaattttt 111  Q
    |||||||||||||| ||| |||||||||||||||||| |||  ||||||||||||||||||  | |||||| ||| |||||||||||||||| |||||    
T  41608501 acactttctctttcttcttctcttctctcttcctaatacatagggtgtacaagggtgtatgcaattaaaaggtgtttatgtaacattttccatttttt 41608404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 47748536 - 47748624
Alignment:
Q  16 actttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||||||||||| ||| |||||||||||||||||| |||| |||||||||| |||||||  | |||||| |||||||||||||||||||    
T  47748536 actttctctttcttcttctcttctctcttcctaatacatggggtgtacaagagtgtatgcaattaaaaggtgtctatgtaacattttcc 47748624  T

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Target: chr1; HSP #18
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 11152399 - 11152296
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||| ||| |||||| ||||||||||||||||||||||| | | |||| |||||| |||| |||||||||||||| | ||||||| |||||||    
T  11152399 accccgcacaagcacgctttctttttcctctcctcttctctcttcccagtgcatggggtgtagaaggatgtatgagaataaatggtgtctatataacatt 11152300  T
Q  101 ttcc 104  Q
    ||||    
T  11152299 ttcc 11152296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 47452336 - 47452242
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||| |||||||||||||| ||||||||||||||||||||| | |||| ||||||||||| |||||| |||||||   |||||||||| ||||    
T  47452336 gcacaagcacactttctcttttctctcctcttctctcttcctattgcatggggtgtacaaggatgtatgggaataaagagtgtctatgtatcatt 47452242  T

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Target: chr1; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 3000405 - 3000497
Alignment:
Q  8 acaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||||||||||| ||||| |||||||||||||||||  ||| ||||||||||||||||||  |||||  |||||||||||| ||||    
T  3000405 acaagcacactttctcttttctctcatcttctctcttcctaatatatggggtgtacaagggtgtatggaaataatggatgtctatgtatcatt 3000497  T

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Target: chr1; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 37926446 - 37926350
Alignment:
Q  14 acactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttccaatttt 110  Q
    ||||||||||||| |||| ||||||||||||||||||  ||| ||||||||||| |||||| ||||||| | ||||||| ||| |||||||| ||||    
T  37926446 acactttctcttttctcttctcttctctcttcctaatgtatggggtgtacaaggatgtatgtgaataaatggtgtctatataatattttccattttt 37926350  T

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Target: chr1; HSP #22
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 38595240 - 38595332
Alignment:
Q  8 acaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||||||||||| ||||| |||||||||||||||||  ||| ||||||||||||||||||  |||||  |||||||||||| ||||    
T  38595240 acaagcacactttctcttttctctcatcttctctcttcctaatatatggggtgtacaagggtgtatggaaataatggatgtctatgtatcatt 38595332  T

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Target: chr1; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 44454064 - 44454169
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggt----gtacaagggtgtatgagaataaaagatgtctatgtaacatttt 102  Q
    ||||| |||||||| ||||||||||| ||||||||||||||||| |||| |||    ||| |||||||||| |||||||| | ||| |||||||||||||    
T  44454064 cacaagcacactttttctttcctctcatcttctctcttcctaatgcatggggtcagagtataagggtgtataagaataaatggtgtttatgtaacatttt 44454163  T
Q  103 ccaatt 108  Q
    ||||||    
T  44454164 ccaatt 44454169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 43216 - 43310
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||| |||||||||||||| |||||||| |||||||| ||||| |||| |||||||||| |||||| |||||||| | | |||||||| ||||    
T  43216 gcacaagcacactttctcttttctctcctcctctctctttctaatgcatggggtgtacaagagtgtataagaataaagggtatctatgtatcatt 43310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 8346409 - 8346327
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctc-ttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaa 82  Q
    ||||||||||| |||||||||||||| |||||||| || |||||||||||| ||||  |||||||| ||||||||||||||||    
T  8346409 accctgcacaagcacactttctcttttctctcctctttttctcttcctaatgcatggagtgtacaaaggtgtatgagaataaa 8346327  T

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Target: chr1; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 44332377 - 44332288
Alignment:
Q  16 actttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcca 105  Q
    |||||||||||| ||| |||||||||||||||||| |||   |||||||||||||||||  | |||||| | ||||||||||||||||||    
T  44332377 actttctctttcttcttctcttctctcttcctaatacatagagtgtacaagggtgtatgcaattaaaaggtatctatgtaacattttcca 44332288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 3302547 - 3302451
Alignment:
Q  8 acaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||| |||||||||| |||| |||| ||||||||||||| |||  ||  ||||||||||||||||||  |||||| ||||| ||| |||||||||||    
T  3302547 acaagcacactttctttttcatctcatcttctctcttccaaatatatagggtgtacaagggtgtatgttaataaaggatgtttatataacattttcc 3302451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 26274540 - 26274607
Alignment:
Q  33 ctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||||||||||||||| |||||| || ||||||||||||| ||||||| | |||||||||| ||||    
T  26274540 ctcttctctcttcctaatgcatgagatgcacaagggtgtatgggaataaagggtgtctatgtatcatt 26274607  T

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Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 6260961 - 6261054
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttccaa 106  Q
    |||| ||||| |||| |||||||||||||||| ||| |  ||  ||||||||| ||||||||| |||||| | ||| |||||||||||||||||    
T  6260961 cacattttctatttcttctcctcttctctctttctagtatatagggtgtacaaaggtgtatgaaaataaatggtgtgtatgtaacattttccaa 6261054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 34340056 - 34339958
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttccaattttta 112  Q
    |||| ||||| ||| |||| |||||||||||||| | | |||  |||||||||| |||| ||| |||||||| ||||||||||||||||| | |||||||    
T  34340056 cacagtttcttttttctcttctcttctctcttccaagtgcatagggtgtacaagagtgt-tgaaaataaaaggtgtctatgtaacatttttctattttta 34339958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 44548397 - 44548342
Alignment:
Q  1 accctgcacaatcacactttctctttcctctcctcttctctcttcctaattcatga 56  Q
    |||| |||||| |||||||||||||| ||||| ||||||||||||||||| |||||    
T  44548397 accccgcacaagcacactttctcttttctctcttcttctctcttcctaatgcatga 44548342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 11322358 - 11322298
Alignment:
Q  42 cttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatttt 102  Q
    |||| |||| ||||||||||| |||||| ||| |||||||| ||| |||||||||||||||    
T  11322358 cttcttaatgcatgaggtgtagaagggtatatcagaataaaggatctctatgtaacatttt 11322298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 11480379 - 11480319
Alignment:
Q  42 cttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatttt 102  Q
    |||| |||| ||||||||||| |||||| ||| |||||||| ||| |||||||||||||||    
T  11480379 cttcttaatgcatgaggtgtagaagggtatatcagaataaaggatctctatgtaacatttt 11480319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 26440861 - 26440906
Alignment:
Q  59 tgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||||||||||||||  ||||||| ||||| |||||||||||||||    
T  26440861 tgtacaagggtgtataggaataaaggatgtttatgtaacattttcc 26440906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 13414846 - 13414910
Alignment:
Q  7 cacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgt 71  Q
    ||||| |||| ||||||||| || || ||||||||||||||||| ||||  |||||| |||||||    
T  13414846 cacaagcacattttctcttttctatcatcttctctcttcctaatgcatggagtgtactagggtgt 13414910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 945 - 848
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttc 103  Q
    |||||| |||||||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||| ||||||| | ||| ||||||||||||||    
T  945 gcacaagcacactttctctttcctctcctcttctctcttcctagtgcatggggtgtacaagagtgtatgggaataaagggtgtttatgtaacattttc 848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 945 - 848
Alignment:
Q  6 gcacaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttc 103  Q
    |||||| |||||||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||| ||||||| | ||| ||||||||||||||    
T  945 gcacaagcacactttctctttcctctcctcttctctcttcctagtgcatggggtgtacaagagtgtatgggaataaagggtgtttatgtaacattttc 848  T

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Target: scaffold0110 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 8867 - 8781
Alignment:
Q  18 tttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    ||||||||||||| | |||||||||||||||||  ||| ||||||||||||||||| |||||||||| |||||||||||||||||||    
T  8867 tttctctttcctcccatcttctctcttcctaatatatggggtgtacaagggtgtataagaataaaaggtgtctatgtaacattttcc 8781  T

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Target: scaffold0237 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 4120 - 4207
Alignment:
Q  13 cacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||||||||||||| |||| |||||||||||||||||| |||| |||||||||||||||||| ||||||| | |||||||||| ||||    
T  4120 cacactttctcttttctcttctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaatggtgtctatgtatcatt 4207  T

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Target: scaffold0018 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 152590 - 152679
Alignment:
Q  14 acactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttc 103  Q
    |||||||||||||| ||| |||||||||||| ||||| |||| | ||||||||||||||||  | |||||| ||||||||||||||||||    
T  152590 acactttctctttcttcttctcttctctctttctaatacatgggatgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttc 152679  T

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Target: scaffold0321 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 10123 - 10031
Alignment:
Q  8 acaatcacactttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacatt 100  Q
    |||| |||||||||||||| ||||||||||||||||||||||| |||  ||||||||||||||||||  |||||  | |||||||||| ||||    
T  10123 acaagcacactttctcttttctctcctcttctctcttcctaatgcatagggtgtacaagggtgtatggaaataatgggtgtctatgtatcatt 10031  T

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Target: scaffold0316 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 17199 - 17285
Alignment:
Q  18 tttctctttcctctcctcttctctcttcctaattcatgaggtgtacaagggtgtatgagaataaaagatgtctatgtaacattttcc 104  Q
    |||||||||||||||||||||||||||||||    || |||||||||| ||||||||  |||||| | |||||||||||||||||||    
T  17199 tttctctttcctctcctcttctctcttcctagaatataaggtgtacaaaggtgtatggaaataaagggtgtctatgtaacattttcc 17285  T

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