View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20718_low_8 (Length: 285)
Name: NF20718_low_8
Description: NF20718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20718_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 25896007 - 25895746
Alignment:
| Q |
1 |
ttagggtcccatctgcattttctttgaccctaaacatccatttgcatccaattgcagttctcttgggtggaagaggcacaagagaccaagttttattctt |
100 |
Q |
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| T |
25896007 |
ttagggtcccatctgcattttctttgaccctaaacacccatttgcatccaattgcagttctgttgggtggaagaggcacaagagaccaagttttattctt |
25895908 |
T |
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| Q |
101 |
ctatagagctgaatattcctttttcatagctgccaaccacattgggtatttaagagcatgtttaacaaatttaggttcagtttggataaggaaaacacta |
200 |
Q |
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| T |
25895907 |
ctatagagctgaatattcctctttcatagctgccaaccacatcgggtatttaagagcatgtttaacaaatttaggttcagtttggataaggaaaacacta |
25895808 |
T |
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| Q |
201 |
agacctaatctacgtaaaggaatgccagttttggttcttgtttgcataggatgagtattaac |
262 |
Q |
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| T |
25895807 |
ggacctaatctacgtaaaggaatgccagttttggttcttgtttgcataggatgagtattaac |
25895746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 6870565 - 6870639
Alignment:
| Q |
17 |
attttctttgaccctaaacatccatttgcatccaattgcagttctcttgggtggaagaggcacaagagaccaagt |
91 |
Q |
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| T |
6870565 |
attttcttttatcctaaacacccatttacaaccaatagcttttctgttgggtggaaggggcacaagtgaccaagt |
6870639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 39581603 - 39581529
Alignment:
| Q |
17 |
attttctttgaccctaaacatccatttgcatccaattgcagttctcttgggtggaagaggcacaagagaccaagt |
91 |
Q |
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| T |
39581603 |
attttcttttatcctaaacacccatttacaaccaatagcttttctgttgggtggaaggggcacaagtgaccaagt |
39581529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 26530058 - 26529981
Alignment:
| Q |
63 |
ttgggtggaagaggcacaagagaccaagttttattcttctatagagctgaatattcctttttcatagctgccaaccac |
140 |
Q |
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| T |
26530058 |
ttggggggaagaggcacaagggaccatgttttatttttctcaagggtagagtattcctcttgcatagctgccaaccac |
26529981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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