View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20718_low_9 (Length: 254)
Name: NF20718_low_9
Description: NF20718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20718_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 42677263 - 42677019
Alignment:
| Q |
1 |
ctcaatctcttgatggttccaaattgtccaaaataagcttccgccatctccatctctttgaagccatgtggaatcaacccaatatacaaaacatgggaag |
100 |
Q |
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| T |
42677263 |
ctcaatctcttgatggttccaaattgtccaaaataagctttcgccatctccatctcttagaagccatgtggaatcaaaccaatatacaaaacatgggaag |
42677164 |
T |
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| Q |
101 |
tattctccaatggtttgcggctaggaccagcttccaacgacaaaaaatcagcaccatgctcaaatggaaaaaattaaatggcaatggctttataccacac |
200 |
Q |
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| T |
42677163 |
tattctccaatggtttgcgactaggaccagcttccaacgacaaaaaatcagcaccatgctcaaatggatagaattaaatggcaatggctttataccacac |
42677064 |
T |
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| Q |
201 |
gaaagagatctgattacactaaaacatattcgctttgattttctt |
245 |
Q |
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| T |
42677063 |
gaaagagatctgattacactaaaacatattcgctttgattttctt |
42677019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 48969543 - 48969581
Alignment:
| Q |
1 |
ctcaatctcttgatggttccaaattgtccaaaataagct |
39 |
Q |
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| T |
48969543 |
ctcaatctcttgatggttccaaattgtccaaaataagct |
48969581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 48969712 - 48969784
Alignment:
| Q |
44 |
ccatctccatctctttgaagccatgtggaatcaacccaatatacaaaacatgggaagtattctccaatggttt |
116 |
Q |
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| T |
48969712 |
ccatctccttctcatagaagccatgtggaatccgaccaatatacaaaacaggggaagaattctccaattgttt |
48969784 |
T |
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