View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20719_low_1 (Length: 538)
Name: NF20719_low_1
Description: NF20719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20719_low_1 |
 | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0267 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 23401 - 23919
Alignment:
| Q |
1 |
cgagaaccacattcagctgtatgcctgttccaatgatatgaatacagctagtaagctggtgaatgatgttttacaatatgagaagaagaggttacacact |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23401 |
cgagaaccacattcagatgtatgcctgttccaatgatatgaatacagctagtaagctggtgaatgatgttttacaatatgagaagaagaggttacacact |
23500 |
T |
|
| Q |
101 |
gaatgtatggaaaaatgtttgtatcatgggtttggttcctcatcacccgtggctatgtttggctctggtgctgagataaagcatttggaacttgagaagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23501 |
gaatgtatggaaaaatgtttgtatcatgggtttggttcctcatcacccgtggctatgtttggctctggtgctgagataaagcatttggaacttgagaagc |
23600 |
T |
|
| Q |
201 |
ttcccttgagtgttgatgtgtttcacccaaacgtaaatgcaattgacgaaatggagctcctgatgttttttgagaaaaatacttttggttgtatatgtga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23601 |
ttcccttgagtgttgatgtgtttcacccaaacgtaaatgcaattgacgaaatggagctcctgatgttttttgagaaaaatacttctggttgtatatgtga |
23700 |
T |
|
| Q |
301 |
catgcaaaagttcacaggcatggtgaaagatgttgaggataaagcaaaatggggcaggataacatttatgacctccaatgctgccaaaagagctgctgag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23701 |
catgcaaaagttcacaggcatggtgaaagatgttgaggataaagcaaaatggggcaagataacatttatgacctccaatgctgccaaaagagctgctgag |
23800 |
T |
|
| Q |
401 |
ctggatggagaagagttttgtggttcgcccctaaaaatagttcattcacagtcagctatgggaggggatacaacattttcatttcctgcagttgaagcaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23801 |
ctggatggagaagagttttgtggttcgcccctaaaaatagttcattcacagtcagctatgggaggggatacaacattttcatttcctgcagttgaagcaa |
23900 |
T |
|
| Q |
501 |
gaatttcttggcttcgtag |
519 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
23901 |
gaatttcttggcttcgtag |
23919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 3879489 - 3880007
Alignment:
| Q |
1 |
cgagaaccacattcagctgtatgcctgttccaatgatatgaatacagctagtaagctggtgaatgatgttttacaatatgagaagaagaggttacacact |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879489 |
cgagaaccacattcagttgtatgcctgttccaatgatatgaatacagctagtaagctggtgaatgatgttttacaatatgagaagaagaggttacacact |
3879588 |
T |
|
| Q |
101 |
gaatgtatggaaaaatgtttgtatcatgggtttggttcctcatcacccgtggctatgtttggctctggtgctgagataaagcatttggaacttgagaagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879589 |
gaatgtatggaaaaatgtttgtatcatgggtttggttcctcatcacccgtggctatgtttggctctggtgctgagataaagcatttggaacttgagaagc |
3879688 |
T |
|
| Q |
201 |
ttcccttgagtgttgatgtgtttcacccaaacgtaaatgcaattgacgaaatggagctcctgatgttttttgagaaaaatacttttggttgtatatgtga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3879689 |
ttcccttgagtgttgatgtgtttcacccaaacgtaaatgcaattgacgaaatggagctcctgatgttttttgagaaaaatacttctggttgtatatgtga |
3879788 |
T |
|
| Q |
301 |
catgcaaaagttcacaggcatggtgaaagatgttgaggataaagcaaaatggggcaggataacatttatgacctccaatgctgccaaaagagctgctgag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879789 |
catgcaaaagttcacaggcatggtgaaagatgttgaggataaagcaaaatggggcaagataacatttatgacctccaatgctgccaaaagagctgctgag |
3879888 |
T |
|
| Q |
401 |
ctggatggagaagagttttgtggttcgcccctaaaaatagttcattcacagtcagctatgggaggggatacaacattttcatttcctgcagttgaagcaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879889 |
ctggatggagaagagttttgtggttcgcccctaaaaatagttcattcacagtcagctatgggaggggatacaacattttcatttcctgcagttgaagcaa |
3879988 |
T |
|
| Q |
501 |
gaatttcttggcttcgtag |
519 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
3879989 |
gaatttcttggcttcgtag |
3880007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 33 - 519
Target Start/End: Complemental strand, 39320149 - 39319662
Alignment:
| Q |
33 |
atgatatgaatacagctagtaagctggtgaatgatgttttacaatatgagaagaagaggttacacactgaatgtatggaaaaatgtttgtatcatgggtt |
132 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39320149 |
atgatatgaatacagctagtatgatggtgaatgatgttttagaatatgagaaaaagaggttacgcactgaatgtatggaaaaatgtttgtatcatgggtc |
39320050 |
T |
|
| Q |
133 |
tggttcctcatcacccgtggctatgtttggctctggtgctgagataaagcatttggaacttgagaagcttcccttgagtgttgatgtgtttcaccc-aaa |
231 |
Q |
| |
|
|||||||||||||| | || ||||||| ||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |||||| ||| |
|
|
| T |
39320049 |
aggttcctcatcacctatagcattgtttgggtctggtgctgagataaagcatttggaacttgagaagcattcattgagtgttgatgtgtgtcacccaaaa |
39319950 |
T |
|
| Q |
232 |
cgtaaatgcaattgacgaaatggagctcctgatgttttttgagaaaaatacttttggttgtatatgtgacatgcaaaagttcacaggcatggtgaaagat |
331 |
Q |
| |
|
| |||||| |||| | || | |||||||||||||||||| ||||| ||||| | ||||||||||||| || | |||||| | ||||||||||| ||| |
|
|
| T |
39319949 |
cataaatgaaattaatgataaggagctcctgatgtttttggagaagaatacctcaggttgtatatgtgcagtgtacaagttccctggcatggtgaaggat |
39319850 |
T |
|
| Q |
332 |
gttgaggataaagcaaaatggggcaggataacatttatgacctccaatgctgccaaaagagctgctgagctggatggagaagagttttgtggttcgcccc |
431 |
Q |
| |
|
|||||||||| || ||| ||||||| |||||||||| | || | ||||||||||||||||||| |||||||||||||| |||||||| || || || |
|
|
| T |
39319849 |
gttgaggatagagaaaagtggggcaagataacattttcgtcccctgatgctgccaaaagagctgcagagctggatggagaggagttttgcggctcctcct |
39319750 |
T |
|
| Q |
432 |
taaaaatagttcattcacagtcagctatgggaggggatacaacattttcatttcctgcagttgaagcaagaatttcttggcttcgtag |
519 |
Q |
| |
|
| |||||| ||| |||||| |||| ||| |||||||||| ||||||||||||||||| ||| |||||| ||||| ||||| |||||| |
|
|
| T |
39319749 |
tgaaaatacttccttcacattcagttattggaggggataaaacattttcatttcctgaagtgaaagcaaaaatttattggcctcgtag |
39319662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University