View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071R-Insertion-1 (Length: 927)
Name: NF2071R-Insertion-1
Description: NF2071R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071R-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 633; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 9 - 830
Target Start/End: Original strand, 18268587 - 18269411
Alignment:
| Q |
9 |
ggttggttgggtatgcaagacaacaagcaagctactgtgtttcgcgtgatagagagacgaaaagtgaatttgggtgttattgagatgtcacttgtaggtg |
108 |
Q |
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| T |
18268587 |
ggttggttgggtatgcaagacaacaagcaagctactgtgtttcgcgtgatagagagaccaaaagtgaatttgggtgttattgagatgtcacttgtaggtg |
18268686 |
T |
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| Q |
109 |
taagggttcggtttggttcattttggacataataattgaaagnnnnnnntatattaaatgagtctagttggtttagattggatcttcaagtttatcggat |
208 |
Q |
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| T |
18268687 |
taacggttcggtttggttcattt-ggacgtcataattaaaagaaaaaaaaatattaaatgagtctaattggtttagattggatcttgaagtttatcgaat |
18268785 |
T |
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| Q |
209 |
cattcaatttggtgctaacacttgtaaattgagttagaaatgagttaaatcgaatttgttttaggtgaattctattaggtaagaattggttgagtttaaa |
308 |
Q |
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| T |
18268786 |
cattcaatttggtgctaatacttgtaaattgagttagaaatgagttaaatcgaatttgttttaggtgaattctattaggtaagaattggttgagtttaaa |
18268885 |
T |
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| Q |
309 |
acttggtttgagtttgatacaannnnnnnnnnn---gttgagcttgattcattttaggtacacaaaaaatttaggatgtttgaggatgagatcaacttat |
405 |
Q |
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| T |
18268886 |
acttggtttgagtttgatacaattttttttttttttgttgaacttgattcattttaggtacacaaaaaatttaggatgtttgaggatgagatcaacttat |
18268985 |
T |
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| Q |
406 |
ttcattttcgtggaagagtcaattttgaccgggatcatggtgtctcttataccacatggttgcagatttctagtcttgacaaagaacttgttgacttcaa |
505 |
Q |
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| T |
18268986 |
ttcattttcgtggaagagtcaattttgactgggatcatggtgtctcttataccacatggttgcagatttctggtcttgacaaagaacttgttgacttcaa |
18269085 |
T |
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| Q |
506 |
ttggaaagtgggcccacaaactccactttatccttgatcggaggatatatgtaccaatacaccttaaaatcccacaatacttgggagtcgacacaaaagg |
605 |
Q |
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| T |
18269086 |
ttggaaagtgggcccacaaactccactttatccttgatcggaggatatatgtaccaatacaccttaaaatcccacaatacttgggagtcgacacaaaagg |
18269185 |
T |
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| Q |
606 |
tagttcatattcaacacatatactcctgaatccaatgagacatcttttaaaaatgaaaaatctgtgagggcccactcaaagac-nnnnnnntggacaata |
704 |
Q |
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| T |
18269186 |
tagttcatattcaacacatatactcctgaatccaatgagacatcttttaaaaatgaaaaatctgcgagggcccactcaaagacaaaaaaaatggacaata |
18269285 |
T |
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| Q |
705 |
cctcaaatcatggagtagggcacttgagcgtaggnnnnnnnntgtatcttttaaaattttgatatttttagagactaacaccgtcccacacgtctaagaa |
804 |
Q |
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| T |
18269286 |
cctcaaatcatggagtagggcacttgagcgtagaaaaaaaaatgtatctttcaaaattttgatatttttagagactaacaccgtcccacacgtctaagaa |
18269385 |
T |
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| Q |
805 |
gcaaaatactaactagtttattttgt |
830 |
Q |
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| T |
18269386 |
gcaaaatactaactagtttattttgt |
18269411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 877 - 922
Target Start/End: Original strand, 18269422 - 18269469
Alignment:
| Q |
877 |
taatactttgactttattttgtgaattttttgggg--cgtactcaaaa |
922 |
Q |
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| T |
18269422 |
taatactttgactttattttgtgaattttttgggggccgtactcaaaa |
18269469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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