View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071R-Insertion-2 (Length: 525)
Name: NF2071R-Insertion-2
Description: NF2071R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071R-Insertion-2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 7 - 525
Target Start/End: Original strand, 23030727 - 23031245
Alignment:
| Q |
7 |
caaaatttgcactacatataaagtgatacgtaataattatggtgattgtgnnnnnnngtttataggttgtgtgcaaatgggagcaggtggtagagcctct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23030727 |
caaaatttgcactacatataaagtgatacgtaataattattgtgattgtgtttttttctttataggttgtgtgcaaatgggagcaggtggtagagcctct |
23030826 |
T |
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| Q |
107 |
aatcctccatcacaaaggaaaatagagaatgatgaacatttgaagagggttccaactacaaaaccaccattcactcttggtgaagtcaagaaagcaattc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23030827 |
aatcctccatcacaaaggaaaatagagaatgatgaacatttgaagagggttccaactacaaaaccaccattcactcttggtgaagtcaagaaagcaattc |
23030926 |
T |
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| Q |
207 |
caccacattgttttaaccgttcattgattagatcattttcctatgtcattgttgaccttaccatagcatcaatccttgtctacatagccacaaattattt |
306 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || |
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| T |
23030927 |
caccacattgttttcaccgttcattgattagatcattttcctatgtcattgttgaccttaccatagcatcaatccttgcctatatagccacaaattactt |
23031026 |
T |
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| Q |
307 |
tcctacccttccacataacctctcatttttggcgtgggccgtttattgggtcatccaaggatgcattctaaccggagtttgggtcattgcacacgaatgt |
406 |
Q |
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| T |
23031027 |
tcctacccttccacataacctctcatttttggcgtggcccgtttattgggccatccaaggatgcattctaaccggagtttgggtcattgcacatgaatgt |
23031126 |
T |
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| Q |
407 |
ggccaccatgcatttagtaattatcaatgggtcgacgatttagttggccttgttcttcattcatgtctcttggttccttatttttcgtggaaatatagtc |
506 |
Q |
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| T |
23031127 |
ggccatcatgcatttagtaattatcaatgggtcgacgatttagttggccttgtccttcattcttgcctcttggtaccttatttttcgtggaaatatagtc |
23031226 |
T |
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| Q |
507 |
atcgccgccaccactctaa |
525 |
Q |
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| T |
23031227 |
atcgccgccaccactctaa |
23031245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 436
Target Start/End: Original strand, 50593858 - 50593934
Alignment:
| Q |
360 |
tccaaggatgcattctaaccggagtttgggtcattgcacacgaatgtggccaccatgcatttagtaattatcaatgg |
436 |
Q |
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| T |
50593858 |
tccaaggttgcattctcaccggtgtttgggtgatagctcatgaatgtggtcaccatgcatttagtaactaccaatgg |
50593934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 519
Target Start/End: Original strand, 37019912 - 37020072
Alignment:
| Q |
359 |
atccaaggatgcattctaaccggagtttgggtcattgcacacgaatgtggccaccatgcatttagtaattatcaatgggtcgacgatttagttggccttg |
458 |
Q |
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|||||||| ||||| || ||||| ||||||||||||||||| || ||||||||||||||||| ||| | ||||||||| | || ||| |||||||||| |
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| T |
37019912 |
atccaaggttgcatccttaccggtgtttgggtcattgcacatgagtgtggccaccatgcattcagtgactatcaatggcttgatgatacagttggcctta |
37020011 |
T |
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| Q |
459 |
ttcttcattcatgtctcttggttccttatttttcgtggaaatatagtcatcgccgccacca |
519 |
Q |
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|||| || || || | || ||||| ||||| |||||||| || |||||||||||||| |
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| T |
37020012 |
ttctccactctgcccttcttgtgccttacttttcatggaaatacagccatcgccgccacca |
37020072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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