View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071R-Insertion-3 (Length: 855)
Name: NF2071R-Insertion-3
Description: NF2071R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071R-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 369 - 660
Target Start/End: Original strand, 28692436 - 28692737
Alignment:
| Q |
369 |
caggtgggaggatggaacattgtatacgacgggctaacatttgtgaccataagaggtgctggtcatcaagttcctacttttgctcccaaactagctcttc |
468 |
Q |
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| T |
28692436 |
caggtgggaggatggaacattgtatacgacgggctaacatttgtgaccataagaggtgctggtcatcaagttcctacttttgctcccaaacaagctcttc |
28692535 |
T |
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| Q |
469 |
agctagttcgacatttcttagtcaataagaaattaccacaacatcctat---------------ttaatttatcattttgatgttactttgttacacatt |
553 |
Q |
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| T |
28692536 |
agctagttcgacatttcttagtcaataagaaattaccacaacatcctatttaattacttctctcttaatttatcattttcatgtta-tttgttacacatt |
28692634 |
T |
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| Q |
554 |
aagattgaatagttgtttgattctttttgggttaaaattaacccacgattgtttgtttgtactgttcactcaaactctctctcattcaagtgtgaatggt |
653 |
Q |
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| T |
28692635 |
aagattgaatagttgtttgattctttttgggttaaaattaacccacgattgtttgtttctactattcactcaaa----ctctcattcaagtgcgaatggt |
28692730 |
T |
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| Q |
654 |
tgtacct |
660 |
Q |
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| T |
28692731 |
tgtacct |
28692737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 177 - 307
Target Start/End: Original strand, 28692241 - 28692371
Alignment:
| Q |
177 |
agtggagatacagatggaagaattccagtaactgcaacaagatacacattaagaaaattgggacttcctatagttcaagattggactccatggtatacta |
276 |
Q |
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| T |
28692241 |
agtggagatacagatggaagaattccagtaactgcaacaagatacacattaagaaaattgggacttcctatagttcaagattggactccctggtatacta |
28692340 |
T |
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| Q |
277 |
gtcgtcaggtaaaccaagttatgctaagttg |
307 |
Q |
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| T |
28692341 |
gtcgtcaggtaaaccaagttgtgctaagttg |
28692371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 688 - 811
Target Start/End: Original strand, 28692822 - 28692952
Alignment:
| Q |
688 |
tagtatttttacattaaagctttcatgtaatcgaaaaaattatcaacattttgaaataacttttttctcattttcattgatacctttg-------aatat |
780 |
Q |
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| T |
28692822 |
tagtatttttacattaaagctttcatgtaatcgaaaaaattatcaacattttgaaataacttttttctcattttcattgatacctttgaatatctaatat |
28692921 |
T |
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| Q |
781 |
ctaagaaccatttttatagccattaaattta |
811 |
Q |
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| T |
28692922 |
ctaagaaccatttttatagccattaaattta |
28692952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 28692060 - 28692101
Alignment:
| Q |
9 |
attgctgctggtattcgtatatgggtttacaggtaaataatt |
50 |
Q |
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| T |
28692060 |
attgctgctggtattcgtatatgggtttacaggtaaataatt |
28692101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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