View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2071R-Insertion-4 (Length: 846)
Name: NF2071R-Insertion-4
Description: NF2071R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071R-Insertion-4 |
 | |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 795; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 795; E-Value: 0
Query Start/End: Original strand, 9 - 846
Target Start/End: Original strand, 41542233 - 41543070
Alignment:
| Q |
9 |
ctttaattatattattactgttcaaattaggatttgagaacaaacatagttcaaaaagagacatttattacatgcatccatctgtctttttaggtgagta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
41542233 |
ctttaattatattattactgttcaaattaggatttgagaacaaacatagttcaaaaagagacatttattacatgcatccatctgtctttttaggcgagta |
41542332 |
T |
|
| Q |
109 |
gtcagaatttcgagacatgatggatcatatggatagcaatactcttttaatattgttgatcttgtattgattgtcaacaattatctctgaatcacggaca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
41542333 |
gtcagaatttcgagacatgatggatcatatggatagcaatactcttttaatattgttgatcttgtattgattgtcaacaattatctctgtatcacggaca |
41542432 |
T |
|
| Q |
209 |
tttctgatctatgaagcgcacaaacacttctgatctttgtatcaccaacacattcgattacataaaattatgtgttttctcaaattattatcggtgtcaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41542433 |
tttctgatctatgaagcgcacaaacacttctgatctttgtatcaccaacacattagattacataaaattatgtgttttctcaaattattatcggtgtcaa |
41542532 |
T |
|
| Q |
309 |
cgtgtcagtatcataaccggtgtccgtgtctgtgtttgtgcttcataacttcagatagaagccatgtctggtgtctggcacatctcggtgttggacaccg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41542533 |
cgtgtcagtatcataaccggtgtccgtgtctgtgtttgtgcttcataacttcagatagaagccatgtctggtgtctggcacatctcggtgttggacaccg |
41542632 |
T |
|
| Q |
409 |
acgtgtgattacattcaatcattcannnnnnnccttcaaattttaccgtgttgacatgtctgtgtcaatgtcgagtctgtacttgtcttggggcttaata |
508 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
41542633 |
acgtgtgattacattcaatcattcatttttttccttcaaattttaccgtgttgacatgtctgtgtcaatgtcgagtctgtatctgtcttggggcttaata |
41542732 |
T |
|
| Q |
509 |
gagaattattcagaagcctttggtcagaatcttactaagattcttcattgtactctggtttagtttgtcacaatcttatagatgtgagactgtttaaaag |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41542733 |
gagaattattcagaagcctttggtcagaatcttactaagattcttcattgtactctggtttagtttgtcacaatcttatagatgtgagactgtttaaaag |
41542832 |
T |
|
| Q |
609 |
ctggtgccctgatctgatatttactaattcttgaaagatttgtttgtagggtaatggtttatcgtccccttgacataaactaacattcttttcatgtttt |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41542833 |
ctggtgccctgatctgatatttactaattcttgaaagatttgtttgtagggtaatggtttatcgtccccttgacataaactaacattcttttcatgtttt |
41542932 |
T |
|
| Q |
709 |
ctatatttatttaaacaatgcagaccagtcagttgtggaccatgctattaatgatatatgtgtccggatgcagtgcagtcgccataacctcaatgtggta |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41542933 |
ctatatttatttaaacaatgcagaccagtcagttgtggaccatgctattaatgatatatgtgtccggatgcagtgcagtcgccataacctcaatgtggta |
41543032 |
T |
|
| Q |
809 |
gattttctgcacttcatcgatttatttctstttttagt |
846 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
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|
| T |
41543033 |
gattttctgcacttcatcgatttatttctgtttttagt |
41543070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 503 - 844
Target Start/End: Original strand, 41558872 - 41559212
Alignment:
| Q |
503 |
ttaatagagaattattcagaagcctttggtcagaatcttactaagattcttcattgtactctggtttagtttgtcacaatcttatagatgtgagactgtt |
602 |
Q |
| |
|
|||||| ||||||||||| ||||||||| | || ||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| |||| |
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|
| T |
41558872 |
ttaataaagaattattcataagcctttgt--ataaacttactaagattcttcattgtactcaggtttagtttgcgtcaatcttatagatg--agattgtt |
41558967 |
T |
|
| Q |
603 |
taaaagctggtgccctgatctgatat-ttactaattcttgaaagatttgtttgtagggtaatggtttatcgtccc---cttgacataaactaacattctt |
698 |
Q |
| |
|
|||| ||| || | ||| ||| ||| || ||||||||| ||| |||| |||||||||||| ||| |||| ||| ||||||||| ||| || | || |
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|
| T |
41558968 |
taaatgctagtatcatga-ctgctatattgctaattcttaaaatatttatttgtagggtaaaggtctatctccccacccttgacatatactgacttcttt |
41559066 |
T |
|
| Q |
699 |
ttcatgttttctatatttatttaaacaatgcagaccagtcagttgtggaccatgctattaatgatatatgtgtccggatgcagtgcagtcgccataacct |
798 |
Q |
| |
|
||| ||| || | | ||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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|
| T |
41559067 |
ttcgtgtattttttgtttcttttcacattgcagaccagtcagttgtggaccatgctattaatgatatatgtgtcttgatgcagtgcagccgccataacct |
41559166 |
T |
|
| Q |
799 |
caatgtggtagattttctgcacttcatcgatttatttctsttttta |
844 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
41559167 |
caatgtggtagattttctgcacttcatcaatttatttctgttttta |
41559212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 41558395 - 41558536
Alignment:
| Q |
44 |
gagaacaaacatagttcaaaaagagacatttattacatgcatccatctgtctttttaggtgagtagtcagaatttcgagacatgatggatcatatggata |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
41558395 |
gagaacaaacatagttcaaaaagagacatttattacatgcatccatctgtctttttgggtgagtcatcagaatttcgcaacatgatggatcatatggata |
41558494 |
T |
|
| Q |
144 |
gcaatactcttttaatattgttgatcttgtattgattgtcaa |
185 |
Q |
| |
|
|| ||||||||| ||| |||||||||||||||||| |||| |
|
|
| T |
41558495 |
ctaacactcttttagtatagttgatcttgtattgattttcaa |
41558536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 4323905 - 4323977
Alignment:
| Q |
283 |
ttttctcaaattattatcggtgtcaacgtgtcagtatcataaccggtgtccgtgtctgtgtttgtgcttcata |
355 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||| | |||||||||||||| | || |||||||||| |
|
|
| T |
4323905 |
ttttcttaaattattatcgttgtcaacgtgtcagtatcgtgttcggtgtccgtgtctatattggtgcttcata |
4323977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 320
Target Start/End: Original strand, 25038107 - 25038144
Alignment:
| Q |
283 |
ttttctcaaattattatcggtgtcaacgtgtcagtatc |
320 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25038107 |
ttttctcaaattattaacggtgtcaacgtgtcagtatc |
25038144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 7250999 - 7251035
Alignment:
| Q |
283 |
ttttctcaaattattatcggtgtcaacgtgtcagtat |
319 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7250999 |
ttttctcaaattattattggtgtcaacgtgtcagtat |
7251035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 274 - 355
Target Start/End: Original strand, 5970134 - 5970216
Alignment:
| Q |
274 |
aattatgtg-ttttctcaaattattatcggtgtcaacgtgtcagtatcataaccggtgtccgtgtctgtgtttgtgcttcata |
355 |
Q |
| |
|
||||||||| |||| ||||||||||| | ||||| ||||||| || |||| |||||||||||||| || | ||||||||||| |
|
|
| T |
5970134 |
aattatgtgattttttcaaattattaactgtgtcgacgtgtccgtgtcatgtccggtgtccgtgtccgtatctgtgcttcata |
5970216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 10031593 - 10031520
Alignment:
| Q |
283 |
ttttctcaaattattatcggtgtcaacgtgtcagtatcataaccggtgtccgtgtctgtgtttgtgcttcataa |
356 |
Q |
| |
|
|||||||||| | |||||||||||||||||| || |||| | ||| ||||||||||||| ||||||||||| |
|
|
| T |
10031593 |
ttttctcaaaattttatcggtgtcaacgtgtttgtgtcatgtctggtatccgtgtctgtgtccgtgcttcataa |
10031520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 251 - 347
Target Start/End: Complemental strand, 56049932 - 56049836
Alignment:
| Q |
251 |
caccaacacattcgattacataaaattatgtgttttctcaaattattatcggtgtcaacgtgtcagtatcataaccggtgtccgtgtctgtgtttgt |
347 |
Q |
| |
|
|||| |||||| |||||||| || ||||| ||||||||||||||||||||||| | ||||| || || | |||||||||||||||| |||||| |
|
|
| T |
56049932 |
caccgacacatatgattacattgaactatgtcatttctcaaattattatcggtgtcgatgtgtccgtgtcgtgtccggtgtccgtgtctgagtttgt |
56049836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 17831567 - 17831639
Alignment:
| Q |
283 |
ttttctcaaattattatcggtgtcaacgtgtcagtatcataaccggtgtccgtgtctgtgtttgtgcttcata |
355 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||| || || |||||||| |||||||| | |||||||||| |
|
|
| T |
17831567 |
ttttctcaaattattagcggtgtcggcgtgtcagtgtcgtatccggtgtctgtgtctgtatccgtgcttcata |
17831639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 283 - 317
Target Start/End: Complemental strand, 29127307 - 29127273
Alignment:
| Q |
283 |
ttttctcaaattattatcggtgtcaacgtgtcagt |
317 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29127307 |
ttttctcaaatgattatcggtgtcaacgtgtcagt |
29127273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 283 - 338
Target Start/End: Complemental strand, 51733167 - 51733112
Alignment:
| Q |
283 |
ttttctcaaattattatcggtgtcaacgtgtcagtatcataaccggtgtccgtgtc |
338 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||| || ||||||| ||||| |
|
|
| T |
51733167 |
ttttctcaagttattatcggtgtcaacctgtcagtatcgtattcggtgtctgtgtc |
51733112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 283 - 320
Target Start/End: Complemental strand, 13799527 - 13799490
Alignment:
| Q |
283 |
ttttctcaaattattatcggtgtcaacgtgtcagtatc |
320 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
13799527 |
ttttctcaaactattatcggtgtcaacgtgtctgtatc |
13799490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 240057 - 240119
Alignment:
| Q |
283 |
ttttctcaaattattatcggtgtcaacgtgtcagtatcataaccggtgtccgtgtctgtgttt |
345 |
Q |
| |
|
||||||||||||||||| | ||||||| |||| || |||| |||||||||||||||| |||| |
|
|
| T |
240057 |
ttttctcaaattattatagttgtcaacatgtccgtgtcatgtccggtgtccgtgtctgagttt |
240119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 283 - 317
Target Start/End: Complemental strand, 11815852 - 11815818
Alignment:
| Q |
283 |
ttttctcaaattattatcggtgtcaacgtgtcagt |
317 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11815852 |
ttttctcaaattattattggtgtcaacgtgtcagt |
11815818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 42720907 - 42720965
Alignment:
| Q |
265 |
attacataaaattatgtg-ttttctcaaattattatcggtgtcaacgtgtcagtatcat |
322 |
Q |
| |
|
||||||| ||||||||| |||| ||||||||||| |||||||||||||||||| |||| |
|
|
| T |
42720907 |
attacatttaattatgtgattttttcaaattattagcggtgtcaacgtgtcagtgtcat |
42720965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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