View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2071R-Insertion-5 (Length: 747)
Name: NF2071R-Insertion-5
Description: NF2071R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071R-Insertion-5 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 9 - 628
Target Start/End: Complemental strand, 26799717 - 26799110
Alignment:
| Q |
9 |
taaagtagcaagtgaaggagttgttatgcaacttgaattcatatggaagaatatcagagaacctttgatagtgccaatgttgagatggacagtgtatttg |
108 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26799717 |
taaagtagcaagtgaaggagttggtatgcaacttgagttcatatggaagaatatcagagaacctttgatagtgccaatgttgagatggacagtgtatttg |
26799618 |
T |
|
| Q |
109 |
tgcctaggtttgtcattgataatgttggttgagaaagtatacgtggcaattgtcatttgttatgtgaagttgtttaaaagaacaccagagaaacgttata |
208 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
26799617 |
tgcttaggtttgtcattgataatgttggttgaaaaagtatacatggcaattgtcatttgttatgtgaagttgtttaagagaacaccagagaagtgttata |
26799518 |
T |
|
| Q |
209 |
aatttgaggctattgaggatgatgctgagttgggaaactccaattatcccatggttcttgtccagatcccaatgtacaatgaaagagaggtgaattttta |
308 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||| || | |||||||||||||||||||||||||||||| | |
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|
| T |
26799517 |
aatttaaggctattgaggatgatgttgagttgggaaactctaattatcccatggttcttgttcaagttccaatgtacaatgaaagagaggtgaattttca |
26799418 |
T |
|
| Q |
309 |
atgatgactttttccttttaaagtcaacttttaaaagcacaactttcttctctcattaatacatacacatatgtgttgttcaaaatgcaggtttatcagc |
408 |
Q |
| |
|
||| ||||||||| |||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
26799417 |
atgttgactttttacttttaaagtcagcttttaaaaccacaact---ttctctcattaatacatacacatatgtgttgttcaaattgcaggtttatcagc |
26799321 |
T |
|
| Q |
409 |
tatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactgacccaacaatcaaggtatgctatac |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26799320 |
tatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactgacccaaccatcaaggtatgctatac |
26799221 |
T |
|
| Q |
509 |
aaaacttttcttttttaacccattgaaattaaaatctttcgtccatcctaaggtattcccacaatttagactattcaagatcgttatggattaatgatta |
608 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26799220 |
aaaacttttcttttttaacccattgcaattaaaatctttcgtcc---------tattcccacaatttagactattcaagatcgttatggattaatgatta |
26799130 |
T |
|
| Q |
609 |
aatcggcaataggacattta |
628 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
26799129 |
aatcgtcaataggacattta |
26799110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 9 - 501
Target Start/End: Complemental strand, 26823809 - 26823319
Alignment:
| Q |
9 |
taaagtagcaagtgaaggagttgttatgcaacttgaattcatatggaagaatatcagagaacctttgatagtgccaatgttgagatggacagtgtatttg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26823809 |
taaagtagcaagtgaaggagttgttatgcaacttgagttcatatggaagaatatcagagaacctttgatagtgccaatgttgagatggacagtgtatttg |
26823710 |
T |
|
| Q |
109 |
tgcctaggtttgtcattgataatgttggttgagaaagtatacgtggcaattgtcatttgttatgtgaagttgtttaaaagaacaccagagaaacgttata |
208 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26823709 |
tgcttaggtttgtcattgataatgttggttgagaaagtttacatggcaattgtcatttgttatgtgaagttgtttaaaagaacaccagagaaacgttata |
26823610 |
T |
|
| Q |
209 |
aatttgaggctattgaggatgatgctgagttgggaaactccaattatcccatggttcttgtccagatcccaatgtacaatgaaagagaggtgaattttta |
308 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26823609 |
aatttgaggctattgaggatgatgttgagttgggaaactcctattatcccatggttcttgtccagatcccaatgtacaatgaaagagaggtgaattttta |
26823510 |
T |
|
| Q |
309 |
atgatgactttttccttttaaagtcaacttttaaaagcacaactttcttctctcattaatacatacacatatgtgttgttcaaaatgcaggtttatcagc |
408 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||||||| |
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|
| T |
26823509 |
atgttgactttttcattttaaagtcaacttttaaaagcacaactttcttctctcattaatacat--acatgtgtgttgttcatattgcaggtttatcagt |
26823412 |
T |
|
| Q |
409 |
tatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactgacccaacaatcaaggtat |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26823411 |
tatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactgacccaacaatcaaggtat |
26823319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 109 - 501
Target Start/End: Complemental strand, 26833630 - 26833234
Alignment:
| Q |
109 |
tgcctaggtttgtcattgataatgttggttgagaaagtatacgtggcaattgtcatttgttatgtgaagttgtttaaaagaacaccagagaaacgttata |
208 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||||| ||| ||| ||| |||||| |||| |||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
26833630 |
tgcctaggcatgtcgttgatgatgttggttgagagagtttacatgggaattgtgatttcttatgtgaagttgtttggtagaaaaccagagaaacgttata |
26833531 |
T |
|
| Q |
209 |
aatttgaggctattgaggatgatgctgagttgggaaactccaattatcccatggttcttgtccagatcccaatgtacaatgaaagagaggtgaattttta |
308 |
Q |
| |
|
||| ||| ||||| ||||||||| ||||||||||||||| ||||| || ||||||||||| || | |||||||| ||||||||||||||||||||| | |
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|
| T |
26833530 |
aatgggagactattaaggatgatgttgagttgggaaactctaattaccctatggttcttgttcaagttccaatgtataatgaaagagaggtgaattttca |
26833431 |
T |
|
| Q |
309 |
atgatgacttttt--ccttttaa-------agtcaacttttaaaagcacaactttcttctctcattaatacatacacatatgtgttgttcaaaatgcagg |
399 |
Q |
| |
|
|| ||| ||||| | |||||| || ||||||| |||||| |||||| |||||| || | || |||||| |||||||||||||||| |
|
|
| T |
26833430 |
atattgatttttttccattttaatgtaatttgtgaactttttaaagcataacttt-ttctct--tt--gaaattgacatataaattgttcaaaatgcagg |
26833336 |
T |
|
| Q |
400 |
tttatcagctatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactgacccaacaatcaaggt |
499 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| ||||| || ||||| ||||| |
|
|
| T |
26833335 |
tttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactgatcctacaattaaggt |
26833236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 26786939 - 26786644
Alignment:
| Q |
11 |
aagtagcaagtgaaggagttgttatgcaacttgaattcatatggaagaatatcagagaacctttgatagtgccaatgttgagatggacagtgtatttgtg |
110 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||| || || |||| ||| || |||||||||||||| ||||||||| ||||| |||||| | | || |
|
|
| T |
26786939 |
aagtagctagtgaaggagttggtatgcaacttgcgtttatttggaggaaaataagagaacctttgatcgtgccaatgctgagagctgcagtgtttatctg |
26786840 |
T |
|
| Q |
111 |
cctaggtttgtcattgataatgttggttgagaaagtatacgtggcaattgtcatttgttatgtgaagttgtttaaaagaacaccagagaaacgttataaa |
210 |
Q |
| |
|
|||| | |||||||||| || |||||||||| ||| ||| ||| |||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26786839 |
cctaagcatgtcattgatgatattggttgagatagtttacatgggaattgtgatttgtttagtgaagttgtttaaaagaacacctgagaaacgttataaa |
26786740 |
T |
|
| Q |
211 |
tttgaggctattgaggatgatgctgagttgggaaactccaattatcccatggttcttgtccagatcccaatgtacaatgaaagagaggtgaatttt |
306 |
Q |
| |
|
| ||| ||||| ||||||||| |||||||| |||||| ||||| || || |||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
26786739 |
tgggagactattaaggatgatgttgagttggaaaactctaattaccctattgttcttgttcaaatcccaatgtacaatgaaagagaggtgaatttt |
26786644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 386 - 501
Target Start/End: Complemental strand, 26786561 - 26786446
Alignment:
| Q |
386 |
gttcaaaatgcaggtttatcagctatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactgac |
485 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26786561 |
gttctaaatgtaggtttatcagctatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattcaactgac |
26786462 |
T |
|
| Q |
486 |
ccaacaatcaaggtat |
501 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
26786461 |
ccaacaatcaaggtat |
26786446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 397 - 500
Target Start/End: Original strand, 41916992 - 41917095
Alignment:
| Q |
397 |
aggtttatcagctatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactgacccaacaatcaa |
496 |
Q |
| |
|
|||||||||| | |||||||| |||||||||| || || |||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
41916992 |
aggtttatcaattgtcaattggagctgcatgtggtctttcatggccttctgataggatcattatacaagttcttgatgactccactgacccaacaatcaa |
41917091 |
T |
|
| Q |
497 |
ggta |
500 |
Q |
| |
|
|||| |
|
|
| T |
41917092 |
ggta |
41917095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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