View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2071R-Insertion-6 (Length: 480)

Name: NF2071R-Insertion-6
Description: NF2071R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2071R-Insertion-6
NF2071R-Insertion-6
[»] chr5 (3 HSPs)
chr5 (8-480)||(14120625-14121114)
chr5 (161-252)||(14302231-14302322)
chr5 (161-226)||(33109985-33110050)
[»] chr8 (4 HSPs)
chr8 (161-270)||(8862410-8862520)
chr8 (186-247)||(12197887-12197948)
chr8 (186-247)||(12442315-12442376)
chr8 (161-235)||(10248354-10248428)
[»] chr4 (3 HSPs)
chr4 (163-263)||(39420825-39420925)
chr4 (179-244)||(19673309-19673374)
chr4 (185-246)||(48098544-48098605)
[»] chr7 (1 HSPs)
chr7 (163-252)||(8745357-8745445)
[»] chr2 (2 HSPs)
chr2 (166-247)||(34230410-34230491)
chr2 (161-229)||(41086577-41086645)
[»] scaffold1384 (1 HSPs)
scaffold1384 (161-229)||(1443-1511)
[»] scaffold0063 (1 HSPs)
scaffold0063 (165-244)||(58339-58418)
[»] chr3 (1 HSPs)
chr3 (161-240)||(28937500-28937579)
[»] chr1 (1 HSPs)
chr1 (208-269)||(6583073-6583134)


Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 8 - 480
Target Start/End: Original strand, 14120625 - 14121114
Alignment:
Q  8 agtaaccatgtgagttggttattaattttcattgtctgatatt-aaataaaaattgttcaaaaataatttattgaaaatataatatcattcattcgaact 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14120625 agtaaccatgtgagttggttattaattttcattgtctgatatttaaataaaaattgttcaaaaataatttattgaaaatataatatcattcattcgatct 14120724  T
Q  107 caaattaataatcgagattaatcatattgcatgattttgttgaatcccactcttacctaaaacaaactcctacacgagaacgaccattataaaaacaata 206  Q
    ||||| ||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||| |||||||||||| |||    
T  14120725 caaatcaataatcgagattcatcatattgcatgattttgttggatcccactcctacctaaaacaaactcctacacgaaaacgatcattataaaaacgata 14120824  T
Q  207 tccaataccacccgtcgtcactattcacctccaaagaaaaatacccaacaccaaagccgagccaattaaaaa----------------ataatattattt 290  Q
    | ||| ||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||                ||||||||||||    
T  14120825 ttcaacaccacccgtcgtcactattcacctccaaaaaaaaatatccaacactaaagccgagccaattaaaaaataatttattgaaaatataatattattt 14120924  T
Q  291 attcgatctcaaatcaataaacgagattaatcgttggatgattttgttggatcccactccaatctctatggatagatttgaagtggaagaaggtcccaaa 390  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14120925 attcaatctcaaatcaataaacgagattaatcgttggatgattttgttggatcccactcctatctctatggatagatttgaagtggaagaaggtcccaaa 14121024  T
Q  391 gctaggatgataggaaagtatataaggtcccacgttgtcgggttgatgtatcatggggtaacacattgagaaagacacgttaacagcagc 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14121025 gctaggatgataggaaagtatataaggtcccacgttgtcgggttgatgtatcatggggtaacacattgagaaagacacgttaacagcagc 14121114  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 14302231 - 14302322
Alignment:
Q  161 acctaaaacaaactcctacacgagaacgaccattataaaaacaatatccaataccacccgtcgtcactattcacctccaaagaaaaataccc 252  Q
    |||||||||| | |||| | ||| |||||||| | ||||||| |||||||| |||||| |||||||||| ||| | ||||||||||||||||    
T  14302231 acctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacaccacctgtcgtcactactcatccccaaagaaaaataccc 14302322  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 33109985 - 33110050
Alignment:
Q  161 acctaaaacaaactcctacacgagaacgaccattataaaaacaatatccaataccacccgtcgtca 226  Q
    ||||||||||||| ||| ||||| |||||||| | ||||||| |||||||||||||||| ||||||    
T  33109985 acctaaaacaaaccccttcacgaaaacgaccactgtaaaaacgatatccaataccacccatcgtca 33110050  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 270
Target Start/End: Original strand, 8862410 - 8862520
Alignment:
Q  161 acctaaaacaaactcctacacgagaacgaccattataaaaacaatatcc-aataccacccgtcgtcactattcacctccaaagaaaaatacccaacacca 259  Q
    |||||||||  |||| ||||||||||| |||||| |||||||||||||| || ||||| ||||||||||| | ||  ||||||||||| ||||| |||||    
T  8862410 acctaaaactgactcttacacgagaacaaccattgtaaaaacaatatccaaacaccacacgtcgtcactactgactcccaaagaaaaacacccaccacca 8862509  T
Q  260 aagccgagcca 270  Q
    |||| ||||||    
T  8862510 aagctgagcca 8862520  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 12197887 - 12197948
Alignment:
Q  186 acgaccattataaaaacaatatccaataccacccgtcgtcactattcacctccaaagaaaaa 247  Q
    ||||||| || |||||| |||||||  ||||||||||||||||| ||||| |||||||||||    
T  12197887 acgaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaaagaaaaa 12197948  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 12442315 - 12442376
Alignment:
Q  186 acgaccattataaaaacaatatccaataccacccgtcgtcactattcacctccaaagaaaaa 247  Q
    ||||||| || |||||| |||||||  ||||||||||||||||| ||||| |||||||||||    
T  12442315 acgaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaaagaaaaa 12442376  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 10248354 - 10248428
Alignment:
Q  161 acctaaaacaaactcctacacgagaacgaccattataaaaacaatatccaataccacccgtcgtcactattcacc 235  Q
    ||||||||||||||||| ||||| |||||||| | ||||||| | |||| | | ||||| ||||||||| |||||    
T  10248354 acctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcccacaacacccatcgtcactactcacc 10248428  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 263
Target Start/End: Original strand, 39420825 - 39420925
Alignment:
Q  163 ctaaaacaaactcctacacgagaacgaccattataaaaacaatatccaataccacccgtcgtcactattcacctccaaagaaaaatacccaacaccaaag 262  Q
    |||||||  |||||||||||||||| ||||   || |||| |||||||| ||||||||||||||||| ||||  ||||||||||| |||||||||| |||    
T  39420825 ctaaaactgactcctacacgagaacaaccaccgtataaacgatatccaacaccacccgtcgtcactactcacacccaaagaaaaagacccaacaccgaag 39420924  T
Q  263 c 263  Q
    |    
T  39420925 c 39420925  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 19673374 - 19673309
Alignment:
Q  179 cacgagaacgaccattataaaaacaatatccaataccacccgtcgtcactattcacctccaaagaa 244  Q
    ||||| || ||||| | ||||| |||||||||| |||| |||||||||||| ||||| ||||||||    
T  19673374 cacgaaaatgaccactgtaaaagcaatatccaacaccatccgtcgtcactactcacccccaaagaa 19673309  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 48098605 - 48098544
Alignment:
Q  185 aacgaccattataaaaacaatatccaataccacccgtcgtcactattcacctccaaagaaaa 246  Q
    |||||||| | ||||||| |||||||  || |||||||||||||| ||||| ||||||||||    
T  48098605 aacgaccactgtaaaaacgatatccatcacaacccgtcgtcactactcacccccaaagaaaa 48098544  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 8745445 - 8745357
Alignment:
Q  163 ctaaaacaaactcctacacgagaacgaccattataaaaacaatatccaataccacccgtcgtcactattcacctccaaagaaaaataccc 252  Q
    |||| |||||||||| ||||| |||||||| |  ||||||||||||||| |||| || ||||||||| ||||| ||||||||||| ||||    
T  8745445 ctaacacaaactccttcacga-aacgaccaatgaaaaaacaatatccaacaccatccttcgtcactactcacccccaaagaaaaacaccc 8745357  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 34230491 - 34230410
Alignment:
Q  166 aaacaaactcctacacgagaacgaccattataaaaacaatatccaataccacccgtcgtcactattcacctccaaagaaaaa 247  Q
    ||||| |||| | ||||| |||||||| ||||||||| |||||||| | |||||||||  |||| |||||||||||||||||    
T  34230491 aaacagactcttccacgaaaacgaccactataaaaacgatatccaacaacacccgtcgcaactactcacctccaaagaaaaa 34230410  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 41086577 - 41086645
Alignment:
Q  161 acctaaaacaaactcctacacgagaacgaccattataaaaacaatatccaataccacccgtcgtcacta 229  Q
    |||||||||| || |||  |||| | |||||| | ||||||| |||||||||||||||| |||||||||    
T  41086577 acctaaaacagaccccttaacgaaagcgaccactctaaaaacgatatccaataccacccatcgtcacta 41086645  T

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Target: scaffold1384 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 1443 - 1511
Alignment:
Q  161 acctaaaacaaactcctacacgagaacgaccattataaaaacaatatccaataccacccgtcgtcacta 229  Q
    |||||||||  |||||||||||||||| |||| | ||||||| |||||||| ||||| |||||||||||    
T  1443 acctaaaactgactcctacacgagaacaaccactgtaaaaacgatatccaacaccacacgtcgtcacta 1511  T

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Target: scaffold0063 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 58418 - 58339
Alignment:
Q  165 aaaacaaactcctacacgagaacgaccattataaaaacaatatccaataccacccgtcgtcactattcacctccaaagaa 244  Q
    |||||| |||||| ||||| |||||||||| |||||   |||||||| || |||||||||||||| ||||  ||||||||    
T  58418 aaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacactacccgtcgtcactactcacacccaaagaa 58339  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 28937500 - 28937579
Alignment:
Q  161 acctaaaacaaactcctacacgagaacgaccattataaaaacaatatccaataccacccgtcgtcactattcacctccaa 240  Q
    |||||||||| || ||| ||||| |  ||||| | ||||||| |||||||||||||||| ||| ||||| ||||||||||    
T  28937500 acctaaaacagaccccttcacgaaagtgaccactgtaaaaacgatatccaataccacccatcgccactactcacctccaa 28937579  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 6583073 - 6583134
Alignment:
Q  208 ccaataccacccgtcgtcactattcacctccaaagaaaaatacccaacaccaaagccgagcc 269  Q
    |||| ||||| ||| |||| || ||||| ||||||||||| ||||||||||||||| |||||    
T  6583073 ccaacaccactcgttgtcattactcacccccaaagaaaaacacccaacaccaaagctgagcc 6583134  T

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