View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2071R-Insertion-7 (Length: 360)

Name: NF2071R-Insertion-7
Description: NF2071R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2071R-Insertion-7
NF2071R-Insertion-7
[»] chr5 (1 HSPs)
chr5 (8-360)||(39136291-39136640)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 360
Target Start/End: Original strand, 39136291 - 39136640
Alignment:
Q  8 aattacttacctaaattggcacaatttaatactacctactgtgattttagtcttcaaaattaattgttccaacacatttttacctcatccgtacnnnnnn 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  39136291 aattacttacctaaattggcacaatttaatactacctactgtgattttagtcttcaaaattaattgttccaacacatttttacctcatccgtacaaaaaa 39136390  T
Q  108 ncctttttaaggtactaaaagtaaatacacattaattgannnnnnnnncaacctcttttcaataatctttctcggacttggttactaaataagtatggtt 207  Q
     ||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39136391 acctttttaaggtactaaaagtaaatacacattaattga-ttttttttcaacctcttttcaataatctttctcggacttggttactaaataagtatggtt 39136489  T
Q  208 caattttgtcnnnnnnnnnnnnngtatggttcgaagagctttaagctgcgaacannnnnnnnnnnnaccatggactttaatcccaaatcatgagcaaaga 307  Q
    ||||||||||             ||||||||| |||||||||||||||||||||            ||||||||||||||||||||||||||||||||||    
T  39136490 caattttgtc--aaaaaaaaaaagtatggttcaaagagctttaagctgcgaacatttttattttttaccatggactttaatcccaaatcatgagcaaaga 39136587  T
Q  308 tttaatgagtaacattatgtaaagcataataatggtatgaggtgcttgccttg 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39136588 tttaatgagtaacattatgtaaagcataataatggtatgaggtgcttgccttg 39136640  T

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