View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071R-Insertion-8 (Length: 269)
Name: NF2071R-Insertion-8
Description: NF2071R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071R-Insertion-8 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 7 - 261
Target Start/End: Original strand, 41876312 - 41876566
Alignment:
| Q |
7 |
cattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttgatgatgcagcgcaatctaaagcagctgggaggataat |
106 |
Q |
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| T |
41876312 |
cattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatgatgcagcgcaatctaaagcagctgggaggataat |
41876411 |
T |
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| Q |
107 |
aacactgcctgaggtcaataccatagcagacgggctccgagcatgtctcggaaattttacatggtaaaataaaatattttgcaataaatttttgtggtct |
206 |
Q |
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| T |
41876412 |
aacattgcctgaggtcaataccatagcagatgggctccgagcatgtctcggaaattttacatggtaaaatcaaatattttgcaataaatttttgtggtct |
41876511 |
T |
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| Q |
207 |
tacgattaacttgtcgaattttctatgacacaggcctgttgtacgagatcttgtt |
261 |
Q |
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| T |
41876512 |
tacgattaacttgtcgaattttctatgacacaggcctgttgtacgagatcttgtt |
41876566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 40867754 - 40867588
Alignment:
| Q |
7 |
cattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttgatgatgcagcgcaatctaaagcagctgggaggataat |
106 |
Q |
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| T |
40867754 |
cattggctgccaagtctatcaacccggccattcgtattttggctgctgaacctaaaggggccgatgacgcagcacaatctaaagcagctggaaggataat |
40867655 |
T |
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| Q |
107 |
aacactgcctgaggtcaataccatagcagacgggctccgagcatgtctcggaaattttacatggtaa |
173 |
Q |
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| T |
40867654 |
aacattgcccgagaccaatactatagctgacgggctacgagcatttcttggagatttcacatggtaa |
40867588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 24800456 - 24800358
Alignment:
| Q |
10 |
tagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttgatgatgcagcgcaatctaaagcagctgggaggataataa |
108 |
Q |
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| T |
24800456 |
tagctgccaaggcgattaatccggctattcgtattttggctgctgagcctaaaggagctgatgatgcagctcaatccaaagcagccggaaggataataa |
24800358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 24817532 - 24817434
Alignment:
| Q |
10 |
tagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttgatgatgcagcgcaatctaaagcagctgggaggataataa |
108 |
Q |
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| T |
24817532 |
tagctgccaaggcgattaatccggctattcgtattttggctgctgagcctaaaggagctgatgatgcagctcaatccaaagcagccggaaggataataa |
24817434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 158
Target Start/End: Complemental strand, 9736080 - 9735930
Alignment:
| Q |
10 |
tagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttgatgat--gcagcgcaatctaaagcagctgggaggataata |
107 |
Q |
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|||||||||| || |||||| || ||||| | ||||||| |||||||| ||||||| ||||||| ||| |||||||||| || | ||||||||||| |
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| T |
9736080 |
tagctgccaaagctattaactcggctatttgtattttggttgctgagcataaaggagctgatgatatgcatcgcaatctaagacaacaaggaggataata |
9735981 |
T |
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| Q |
108 |
acactgcctgaggtcaataccatagcagacgggctccgagcatgtctcgga |
158 |
Q |
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| | |||||||| | |||| ||||||||| |||| ||||||| ||||||| |
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| T |
9735980 |
aaattgcctgagataaatattatagcagacaggcttcgagcatttctcgga |
9735930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 9735855 - 9735803
Alignment:
| Q |
209 |
cgattaacttgtcgaattttctatgacacaggcctgttgtacgagatcttgtt |
261 |
Q |
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||||||| ||||||| |||||| |||||||||||| |||||| |||||||||| |
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| T |
9735855 |
cgattaatttgtcgagttttctgtgacacaggcctattgtacaagatcttgtt |
9735803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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