View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_65 (Length: 303)
Name: NF2071_high_65
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_high_65 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 26613620 - 26613320
Alignment:
| Q |
1 |
ttagattttcctgtgttcttatcagtgataatgacagcttcaagtatgtcaccaaattgttcaaaatatgttctcatttcatcagttggagtttcccaag |
100 |
Q |
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| T |
26613620 |
ttagattttcctgtgttcttatcagtgataatgacagcttcaagtatgtcaccaaattgttcaaaatatgttctcatttcatcagttggagtttcccaag |
26613521 |
T |
|
| Q |
101 |
ctagtcctccaacaaaaaccttagtgaatgttgtgtctccaaattgtgatcgataatgtggataagccattgctactat--agttcttgatattcttctt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26613520 |
ctagtcctccaacaaaaaccttagtgaatgttgtgtctccaaattgtgatcgataatgtggataagccattgctactatagagttcttgatattcttctt |
26613421 |
T |
|
| Q |
199 |
gctatagctagtttatgcatgcatcaagaagtgtac---tactcttggcattatcattctcatctcttgtcttcaaagttttctttctttcctttgcttc |
295 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26613420 |
gctatagctagtttatgcatgcatcaagaagtgtactagtactcttggcattatcattctcatctcttgtcttcaaagttttctttctttcttttgcttc |
26613321 |
T |
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| Q |
296 |
t |
296 |
Q |
| |
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| |
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| T |
26613320 |
t |
26613320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 9036620 - 9036484
Alignment:
| Q |
1 |
ttagattttcctgtgttcttatcagtgataatgacagcttcaagtatgtcaccaaattgttcaaaatatgttctcatttcatcagttggagtttcccaag |
100 |
Q |
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|||||| |||| || | |||||||||||||| |||||||| | || || ||||||||||||||||| |||||||| || || |||||||||||| |
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| T |
9036620 |
ttagatcttccagtatacttatcagtgataacaacagcttctaagatctctccaaattgttcaaaatacattctcattgtttccctttgagtttcccaag |
9036521 |
T |
|
| Q |
101 |
ctagtcctccaacaaaaaccttagtgaatgttgtgtc |
137 |
Q |
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| T |
9036520 |
ctaaccctccaacaaataatttggtaaatgttgtgtc |
9036484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 12141590 - 12141532
Alignment:
| Q |
89 |
gagtttcccaagctagtcctccaacaaaaaccttagtgaatgttgtgtctccaaattgt |
147 |
Q |
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||||||||||||| | ||||||||||||||| || ||| | |||||||| ||||||||| |
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| T |
12141590 |
gagtttcccaagccaatcctccaacaaaaactttggtgtaagttgtgtcaccaaattgt |
12141532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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