View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_high_84 (Length: 248)
Name: NF2071_high_84
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF2071_high_84 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 77 - 213
Target Start/End: Complemental strand, 35854681 - 35854545
Alignment:
Q |
77 |
tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccg |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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T |
35854681 |
tctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtccttaccg |
35854582 |
T |
|
Q |
177 |
gtccaaagcctcctatgttcaacctttttcgtcttgt |
213 |
Q |
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||||||| ||||| |||| ||||||||||| |||||| |
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T |
35854581 |
gtccaaatcctcccatgtgcaacctttttcatcttgt |
35854545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 10521492 - 10521323
Alignment:
Q |
25 |
aaagcatgagtagagtaggaccggatcatgagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcaca |
124 |
Q |
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|||| ||| |||||| ||||||||||| ||||||||| |||| | ||| | | |||||||||||||||||||||| |||||||| |||||||| |||| |
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T |
10521492 |
aaagtatgcgtagagaaggaccggatcttgagagctcgacaagattaacctgtttgttttgaggtatattggccttgaattttgcgatagcaatagcacg |
10521393 |
T |
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Q |
125 |
agatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaaagcctcctatgt |
194 |
Q |
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T |
10521392 |
cgatatcccaccaatagcatcaaccaaaccttgagatgctgcgtccttcccgatccaaatcctcctatgt |
10521323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 35802504 - 35802577
Alignment:
Q |
140 |
agcatcaaccaaaccatgagatgttgcgtccttaccggtccaaagcctcctatgttcaacctttttcgtcttgt |
213 |
Q |
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T |
35802504 |
agcatcaaccaaaccatgagatgctgcgtccttaccggtccaaatcctcccatgtgcaacctttttcatcttgt |
35802577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 189
Target Start/End: Complemental strand, 55706049 - 55705908
Alignment:
Q |
48 |
gatcatgagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaa |
147 |
Q |
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|||| |||||||||||||| | ||| | |||||||||||||||||| || |||||||||| |||||||| |||| |||||||||||||||||||||| |
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T |
55706049 |
gatcttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaa |
55705950 |
T |
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Q |
148 |
ccaaaccatgagatgttgcgtccttaccggtccaaagcctcc |
189 |
Q |
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T |
55705949 |
ccaaaccatgagatgctgcgtctttaccggtccaaaccctcc |
55705908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 54304359 - 54304257
Alignment:
Q |
81 |
ttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtcc |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |||||||||||||||||||| ||||||||||||||||||| |||| |
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T |
54304359 |
ttttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtcc |
54304260 |
T |
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Q |
181 |
aaa |
183 |
Q |
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||| |
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T |
54304259 |
aaa |
54304257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 45876742 - 45876854
Alignment:
Q |
77 |
tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccg |
176 |
Q |
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||||| |||||||||||| || |||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||| ||| ||||||||| |
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T |
45876742 |
tctgtcttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctgcatccttaccg |
45876841 |
T |
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Q |
177 |
gtccaaagcctcc |
189 |
Q |
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||||||| ||||| |
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T |
45876842 |
gtccaaaccctcc |
45876854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 47293595 - 47293489
Alignment:
Q |
77 |
tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccg |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || | |||| |||||||||||||||||||||||||||||| ||||||||||| | |
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T |
47293595 |
tctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtccttactg |
47293496 |
T |
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Q |
177 |
gtccaaa |
183 |
Q |
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||||||| |
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T |
47293495 |
gtccaaa |
47293489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 45858817 - 45858922
Alignment:
Q |
83 |
ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaa |
182 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||||||||||||| |||||||||| ||| ||||||||||||||| |
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T |
45858817 |
ttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaaccagaccatgagatactgcatccttaccggtccaa |
45858916 |
T |
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Q |
183 |
agcctc |
188 |
Q |
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| |||| |
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T |
45858917 |
accctc |
45858922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 189
Target Start/End: Original strand, 56208543 - 56208649
Alignment:
Q |
83 |
ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaa |
182 |
Q |
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|||||||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| ||||| ||| || ||||||||| || |
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T |
56208543 |
ttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccaagagatagtgcatctttaccggtctaa |
56208642 |
T |
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Q |
183 |
agcctcc |
189 |
Q |
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T |
56208643 |
accctcc |
56208649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 52 - 201
Target Start/End: Original strand, 7972057 - 7972206
Alignment:
Q |
52 |
atgagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaa |
151 |
Q |
|
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||||||||||||||||| ||| | |||||||||||| | ||||||||||||||||||||||||||| |||| |||| |||| |||||||| ||||| |
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T |
7972057 |
atgagagctccacaatagtaacatgtctgttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaa |
7972156 |
T |
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Q |
152 |
accatgagatgttgcgtccttaccggtccaaagcctcctatgttcaacct |
201 |
Q |
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||||| |||| ||| || ||||||||||||| |||||| ||| |||||| |
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T |
7972157 |
accattagatactgcatctttaccggtccaaatcctcctctgtgcaacct |
7972206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 183
Target Start/End: Original strand, 7961689 - 7961818
Alignment:
Q |
54 |
gagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaac |
153 |
Q |
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|||| |||||||||| ||| | | |||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||||| |
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T |
7961689 |
gagaactccacaatagtaacatgtttgttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaat |
7961788 |
T |
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Q |
154 |
catgagatgttgcgtccttaccggtccaaa |
183 |
Q |
|
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||| |||| |||| || ||||| ||||||| |
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T |
7961789 |
cattagatattgcatctttaccagtccaaa |
7961818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 183
Target Start/End: Complemental strand, 24357588 - 24357488
Alignment:
Q |
83 |
ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaaccatgagatgttgcgtccttaccggtccaa |
182 |
Q |
|
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|||||||||||||||||||||||||||||| ||||| || | || | |||||||||||||||||||||||||| |||| ||| || ||||| |||||| |
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T |
24357588 |
ttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgcatctttaccagtccaa |
24357489 |
T |
|
Q |
183 |
a |
183 |
Q |
|
|
| |
|
|
T |
24357488 |
a |
24357488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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