View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_12 (Length: 563)
Name: NF2071_low_12
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 319 - 546
Target Start/End: Original strand, 49783095 - 49783325
Alignment:
| Q |
319 |
ggatcacaattaattagtagatcatatgatcatgtctattaagttgattagttaaattttgttggatgtaaataaagggaga---aaaacagtggatgct |
415 |
Q |
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| T |
49783095 |
ggatcacaattaattagtagatcatatgatcatgtctattaagttgattagttacattttgttggatgtaaataaagggagatcaaaaacagtggatgct |
49783194 |
T |
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| Q |
416 |
ggagaaggcggtgtgttgtgataggagtggcttcgtgcttctctataattggactacaattcaacaattcagtgtcattggaacatgaagctatggctaa |
515 |
Q |
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| T |
49783195 |
ggagaaggcggtgtgttgtgataggagtggcttcgtgcttctctataattggactacaattcaacaattcagtgtcattggaacatgaagctgtggctaa |
49783294 |
T |
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| Q |
516 |
ggagaataccatgttggtggccatgtcaaat |
546 |
Q |
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| T |
49783295 |
ggagaataccatgttggtggccatgtcaaat |
49783325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 162 - 280
Target Start/End: Original strand, 49782940 - 49783058
Alignment:
| Q |
162 |
agaatctaacctctcaagtagttccaccatggcatcaaccagttgctgcctccgtctttaccctacaacttcaaacgcttctctcatccctaaacactca |
261 |
Q |
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| T |
49782940 |
agaatctaacctctcaagtagttccaccatgacatcaaccagttgctgcctccgtctttaccctacaacttcaaacgcttctctcatccctaaaaactca |
49783039 |
T |
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| Q |
262 |
cctcaactttcctcgtaag |
280 |
Q |
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| T |
49783040 |
cctcaactttcctcgtaag |
49783058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 49782801 - 49782919
Alignment:
| Q |
9 |
gaagaatatagatacattcattcatt---ttgacatttctattttctgcttccctata--tactttatacaatactcgtaataattaattaattaattta |
103 |
Q |
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| T |
49782801 |
gaagaatatagatacattcattcattcatttgacatttctattttctgcttccctatatatactttatacaatactcgtaa----taattaattaattta |
49782896 |
T |
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| Q |
104 |
tagttgaacatcatacataatat |
126 |
Q |
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| T |
49782897 |
tagttgaacatcatacataatat |
49782919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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