View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_40 (Length: 404)
Name: NF2071_low_40
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 20757888 - 20758264
Alignment:
| Q |
18 |
actatatataatccaaatcttcactttagttcgtctttaatcgtagtataaaattcctttttggacaacaaatttattgtacaaaatgtaaaaacagaaa |
117 |
Q |
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| T |
20757888 |
actatatataatccaaatcttcactttagttcgtctttaatcgtagtacaaaattcatttttggacaacaaacttattgtgcaaaatgtaaaaacagaaa |
20757987 |
T |
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| Q |
118 |
tggtgaaggaaaagaaagaattagaactacacttacaaaattttcatctgagccattaaatattccagcacctccagatgcaaagttaacaccatccaaa |
217 |
Q |
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| T |
20757988 |
tggtgaaggaaaagaaagaattagaattacacttacaaaattttcatctgtgccattgaatataccagcacccccagatgcaaagttaacaccatccaag |
20758087 |
T |
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| Q |
218 |
aatgatacattcttcttgttgaaattgatcttagatactagggagaggtaaggaggtgacgtggcaaggcctaatttttcagctgcaaaacaaatgaaac |
317 |
Q |
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| T |
20758088 |
aatgatacattcttcttgttgaaattgatcttagatactagtgagaggtaaggaggtgacgtagcaaggcctaatttttcagctgcaaaagaaatgaaac |
20758187 |
T |
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| Q |
318 |
aatattgtgtcaattatcaatatgaatgccccaatnnnnnnnntgagttatcatttaataaaaactatttagtataat |
395 |
Q |
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| T |
20758188 |
aatattgtgtcaattatcaatatgaatggcccaat-aaaaaaatgagttatcatttaataaaaactatttaatataat |
20758264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 127 - 305
Target Start/End: Original strand, 20752759 - 20752936
Alignment:
| Q |
127 |
aaaagaaagaattagaactacacttacaaaattttcatctgagccattaaatattccagcacctccagatgcaaagttaacaccatccaaaaatgataca |
226 |
Q |
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| T |
20752759 |
aaaagaaa-aataagaactgcacttacaatagttggatctgtgccattaaatattccagcacctccagatgcaaagttaacaccatgcaagaatgataca |
20752857 |
T |
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| Q |
227 |
ttcttcttgttgaaattgatcttagatactagggagaggtaaggaggtgacgtggcaaggcctaatttttcagctgcaa |
305 |
Q |
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| T |
20752858 |
ttcttcttgttgaaattgattttagatactaaggagaggtaaggtggtgacgtggcaagacctattttttcagctgcaa |
20752936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 20801281 - 20801386
Alignment:
| Q |
126 |
gaaaagaaagaattagaactacacttacaaaattttcatctgagccattaaatattccagcacctccagatgcaaagttaacaccatccaaaaatgatac |
225 |
Q |
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| T |
20801281 |
gaaaagaaagaattagaactgcacttacataatttggatctatgcctttaaatattccagcaccaccagaggcaaagttaacaccactcaagaaggatac |
20801380 |
T |
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| Q |
226 |
attctt |
231 |
Q |
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|||||| |
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| T |
20801381 |
attctt |
20801386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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