View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_41 (Length: 401)
Name: NF2071_low_41
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 47806974 - 47806586
Alignment:
| Q |
1 |
acaatttttgttttggtcgtgattttcctttccagccgaatcaacagatctttccgcaatatgaaacttgagtaggggatatatcttgtactttgacatg |
100 |
Q |
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| T |
47806974 |
acaatttttgttttggtcgtgattttcctttccagccgaatcaacagatctttccgcaatatgaaacttgagtaggggatatatcttgtactttgacatg |
47806875 |
T |
|
| Q |
101 |
actttctttttaaagattggaaacaacttatcgtcagggaagaattttttcttgtctttatgatgataaagatttttctctgtaatgtattcaaacatga |
200 |
Q |
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| T |
47806874 |
actttctttttaaagattggaaacaacttatcgtcagggaagaattttttcttgtctttatgatgataaagatttttctctgtaatgtattcaaacatga |
47806775 |
T |
|
| Q |
201 |
gagattttacatcccttcgcatcattggttcggtttcatatctccctatggatgccaggaaactagagagaggtcctgatgcccatccaacgaattgccc |
300 |
Q |
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| T |
47806774 |
gagattttacatcccttcgcatcattggttcggtttcatatctccctatggatgccaggaaactagagagaggtcctgatgcccatccaacgaattcccc |
47806675 |
T |
|
| Q |
301 |
tgaactataccgcttccgtttgtttggcttatgcatacctgaataatcttcatttccattggagtcattttgtttttcttctttgcctt |
389 |
Q |
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| T |
47806674 |
tgaactatagcgcttccgtttgttcggcttatgcatacctgaataaccttcatttccattggagtcattttgtttttcttcttcgcctt |
47806586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 47804430 - 47804079
Alignment:
| Q |
1 |
acaatttttgttttggtcgtgattttcctttccagccgaatcaacagatctttccgcaatatgaaacttgagtaggggatatatcttgtactttgacatg |
100 |
Q |
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||||||||| |||| |||||||||||||||| || |||||| | || ||| |||||| ||||||| |||||| | |||||||| |||| ||| |
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| T |
47804430 |
acaattttttttttcatcgtgattttcctttctagatgaatcatctgaatttttcgcaatgtgaaactcgagtagagaatatatctgagacttcaacaca |
47804331 |
T |
|
| Q |
101 |
actttctttttaaagattggaaacaacttatcgtcagggaagaattttttcttgtctttatgatgataaagatttttctctgtaatgtattcaaacatga |
200 |
Q |
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||||||||||||| || ||||||||||| || ||||||| |||||| |||||||||| |||| |||||||||||||| ||||||||||| | |||| |
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| T |
47804330 |
gctttctttttaaatataggaaacaacttgtcatcagggaggaatttcctcttgtctttgggatggtaaagatttttctccttaatgtattcatatatga |
47804231 |
T |
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| Q |
201 |
gagattttacatcccttcgcatcattggttcggtttcatatctccctatggatgccaggaaactagagagaggtcctgatgcccatccaacgaattgccc |
300 |
Q |
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| T |
47804230 |
gagatcttattccccattgcatcattggttcggttttgtatctccctatggatgcaaggaagctagatagaggtcttgatgcccatccgacaaattccat |
47804131 |
T |
|
| Q |
301 |
tgaactataccgcttccgtttgtttggcttatgcatacctgaataatcttca |
352 |
Q |
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|||||||||||| ||| |||| || ||||||||| ||||| ||| |||||| |
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| T |
47804130 |
tgaactataccgattctgtttcttcagcttatgcacacctgtatattcttca |
47804079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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