View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2071_low_74 (Length: 277)
Name: NF2071_low_74
Description: NF2071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2071_low_74 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 42614444 - 42614197
Alignment:
| Q |
21 |
catgcatgacatatggtaagaataacacctacttatatcgatgttaaatttagtatgcatatttatattttacgtaagtatttttcaataaacaaagatt |
120 |
Q |
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| T |
42614444 |
catgcatgacatatggtaagaataacacctacttatatcgatgttaaatttagtatgcatatttatattttacgtaagtatttttcaataaacaaagatt |
42614345 |
T |
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| Q |
121 |
gggtacatagattaacatcctaatattgtattatcatttatgtcagatgataaactattaagatcctgacagttttaaatagttcgccttatacttttgt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42614344 |
gggtacatagattaacatcctaatattgtattatcatttatgtcagatgataaactattaagatccggacagttttaaatagttcgccttatacttttgt |
42614245 |
T |
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| Q |
221 |
ttcaaannnnnnnntgctcagatttctttaccagtatcatatattcttc |
269 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42614244 |
ttcaaa-ccccccctgctcagatttctttaccagtatcatatattcttc |
42614197 |
T |
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