View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20720_high_1_N (Length: 620)
Name: NF20720_high_1_N
Description: NF20720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20720_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 57 - 368
Target Start/End: Complemental strand, 1046365 - 1046056
Alignment:
| Q |
57 |
acagtgtcacatatattgtttgtatcttgatgttcaaataacgtaactcgtttttatcaaagataaatatgaaaaatgagggttttaaaggtcagttaca |
156 |
Q |
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| T |
1046365 |
acagtgtcacatatattgtttgtatcttgatgttcaaataacgtaactcgttttgatcaaatataaatatgaaaaatgagggttttaaaggtcagttaca |
1046266 |
T |
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| Q |
157 |
gggttgctcccaatagatatccatctaatctgacctaattcatgtattatgggtcgggtaccggtttggtgaatccaaatccatgaaaccatgaccccgg |
256 |
Q |
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| T |
1046265 |
gggttgctcccaatagat--ccatctaatctgacctaattcatgtattatgggtcgggtaccggtttggtgaatccaaatacatgaaaccttgaccccgg |
1046168 |
T |
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| Q |
257 |
cccgatatacttaaaatatctcccattcactgctaaatgtgaaaactaacactagttgcagccgtaaaccaacttcgcactctctctgccaaaagctagc |
356 |
Q |
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| T |
1046167 |
cccgatatacttcaaatatctcccattcactgctaaatgtgaaaactaacactagttgcagccataaaccaacttcggactctctctgccaaaagctagc |
1046068 |
T |
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| Q |
357 |
atatgccttcac |
368 |
Q |
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| T |
1046067 |
atatgccttcac |
1046056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 393 - 566
Target Start/End: Complemental strand, 1046043 - 1045869
Alignment:
| Q |
393 |
ccaaatcttagttattacaatattcaatgcatgactcttaacacatcatctcatgcatacccaagatgagagtgtgaagtttgcataacatacatctcta |
492 |
Q |
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| T |
1046043 |
ccaaatcttagttatgacaatattcaatgcgtgactcttaacacatcatctcatgcatgcccaagatgagagtgtgaagtttgcataacatacatctcta |
1045944 |
T |
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| Q |
493 |
-gtgaccatattgttagtcacagattgcagaaaattgctgtttatatcaaatattcgacaatattttgtattaaa |
566 |
Q |
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| T |
1045943 |
ggtgaccatattgttagtcacagattgcagaaaattgctgtttatatcaaatatttgacaatattttgtattaaa |
1045869 |
T |
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