View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20720_high_4 (Length: 345)
Name: NF20720_high_4
Description: NF20720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20720_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 54 - 330
Target Start/End: Complemental strand, 30663078 - 30662788
Alignment:
| Q |
54 |
taaatattttataaggatccatcattaataataaggtgtgaatcacaaacaaattgaaagaaataaa--------------tacatcaaccaacttaaat |
139 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30663078 |
taaatattttataaggatccatcattaataataaggtgtgaatcacaaacaaattgaaagaaataaagagtactaaataaatacatcaaccaacttaaat |
30662979 |
T |
|
| Q |
140 |
ataaatgggatgaaatcatgcatggtaggtattttcaaacaattttcaactcaaggtttgtacatccagcttgagtcttgtgtcgttcaaaaagttcttg |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30662978 |
ataaatgggatgaaatcatgcatggtaggtattttcaaacaattttcaactcaaggtttgtacatccagcttgagtcttgtgtcgttcaaaaagttcttg |
30662879 |
T |
|
| Q |
240 |
aagtgcttcaacaaactcactatgtactttggcaacctaaaaccaaagtnnnnnnnggataaataatatgctttatgattatgagttcaaa |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
30662878 |
aagtgcttcaacaaactcactatgtactttggcaacctaaaaccaaagtaaaaaaaggataaataatatgctttatgattatgaattcaaa |
30662788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 174 - 282
Target Start/End: Complemental strand, 30669540 - 30669432
Alignment:
| Q |
174 |
tcaaacaattttcaactcaaggtttgtacatccagcttgagtcttgtgtcgttcaaaaagttcttgaagtgcttcaacaaactcactatgtactttggca |
273 |
Q |
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|||||||||| ||||||||||||| | | |||||||| |||| |||| | ||||||||| |||||||||||||||||||||| |||||||||||| ||| |
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| T |
30669540 |
tcaaacaattctcaactcaaggttcggatatccagctcgagttttgttgcattcaaaaagatcttgaagtgcttcaacaaactgactatgtactttagca |
30669441 |
T |
|
| Q |
274 |
acctaaaac |
282 |
Q |
| |
|
|||| |||| |
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|
| T |
30669440 |
acctgaaac |
30669432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 29260339 - 29260367
Alignment:
| Q |
30 |
aaaatctcaatccaatacaccccctaaat |
58 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
29260339 |
aaaatctcaatccaatacaccccctaaat |
29260367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 173 - 280
Target Start/End: Original strand, 13194416 - 13194523
Alignment:
| Q |
173 |
ttcaaacaattttcaactcaaggtttgtacatccagcttgagtcttgtgtcgttcaaaaagttcttgaagtgcttcaacaaactcactatgtactttggc |
272 |
Q |
| |
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||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| |
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|
| T |
13194416 |
ttcaaacaaatttcaacttaaggtttgtatatccagcttgagtcttgtgtcgttcaaaaagatcttgaagtgcttcaagaaactcactgtgtactttggc |
13194515 |
T |
|
| Q |
273 |
aacctaaa |
280 |
Q |
| |
|
|||||||| |
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|
| T |
13194516 |
aacctaaa |
13194523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 10110607 - 10110714
Alignment:
| Q |
174 |
tcaaacaattttcaactcaaggtttgtacatccagcttgagtcttgtgtcgttcaaaaagttcttgaagtgcttcaacaaactcactatgtactttggca |
273 |
Q |
| |
|
|||||||||||| |||||||| |||| | | ||||| ||| ||||| ||||| || || |||||||||||||| ||||||| ||| |||| |||||| |
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| T |
10110607 |
tcaaacaatttttaactcaagctttggatagccagcccgagctttgtgccgttcgaagagatcttgaagtgcttccacaaactgactgtgtatcttggca |
10110706 |
T |
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| Q |
274 |
acctaaaa |
281 |
Q |
| |
|
| |||||| |
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|
| T |
10110707 |
atctaaaa |
10110714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 40411482 - 40411510
Alignment:
| Q |
30 |
aaaatctcaatccaatacaccccctaaat |
58 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
40411482 |
aaaatctcaatccaatacaccccctaaat |
40411510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 24192685 - 24192657
Alignment:
| Q |
30 |
aaaatctcaatccaatacaccccctaaat |
58 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
24192685 |
aaaatctcaatccaatacaccccctaaat |
24192657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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