View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20720_high_6 (Length: 332)

Name: NF20720_high_6
Description: NF20720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20720_high_6
NF20720_high_6
[»] scaffold0961 (1 HSPs)
scaffold0961 (1-272)||(703-974)
[»] chr6 (2 HSPs)
chr6 (1-272)||(17834435-17834706)
chr6 (1-272)||(16543431-16543701)
[»] chr5 (3 HSPs)
chr5 (1-272)||(22477140-22477410)
chr5 (35-149)||(41741209-41741324)
chr5 (238-267)||(32030019-32030048)
[»] chr1 (4 HSPs)
chr1 (1-272)||(35574090-35574360)
chr1 (80-272)||(35535390-35535581)
chr1 (35-141)||(292336-292443)
chr1 (172-267)||(36204370-36204466)
[»] chr4 (4 HSPs)
chr4 (8-272)||(15606330-15606595)
chr4 (8-256)||(15606698-15606947)
chr4 (8-120)||(16561501-16561613)
chr4 (61-149)||(28987914-28988004)
[»] chr2 (3 HSPs)
chr2 (1-178)||(5921002-5921179)
chr2 (1-178)||(36307325-36307502)
chr2 (35-120)||(23357661-23357746)
[»] chr3 (3 HSPs)
chr3 (8-268)||(23493326-23493587)
chr3 (25-149)||(16250842-16250967)
chr3 (238-267)||(20812446-20812475)
[»] chr8 (3 HSPs)
chr8 (80-272)||(36114637-36114820)
chr8 (35-149)||(29022616-29022731)
chr8 (174-267)||(34344035-34344128)
[»] chr7 (4 HSPs)
chr7 (80-171)||(19095437-19095528)
chr7 (26-151)||(3750120-3750247)
chr7 (26-82)||(37634507-37634563)
chr7 (165-262)||(42903970-42904067)
[»] scaffold1825 (1 HSPs)
scaffold1825 (26-82)||(299-355)


Alignment Details
Target: scaffold0961 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 703 - 974
Alignment:
Q  1 gatttgtaaaatcttcccaagtagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgtgagaaagagaaattgaaggcttga 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  703 gatttgtaaaatcttccgaagtagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaattgtgagaaagagaaattgaaggcttga 802  T
Q  101 atttagggttaattaggtaagtacctgtcccttgagaaattaaaggttgaaacgtagttttgatctgccgtagaagctatgaatctcagcttcataaaaa 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| ||||    
T  803 atttaggggtaattaggtaagtacctgtcccttgagaaattaaaggttgaaacgtggttttgatcagccgtagaagctatgaatctcaacttcatgaaaa 902  T
Q  201 ctgagttttgaagacagaaacgcgtttaacaaaattgctttttcattcatccaaacaacatggaaaagagca 272  Q
    |||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  903 ctgagttttggagacaaaaacgcgtttcacaaaattgctttttcattcatccaaacaacatggaaaagagca 974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 17834435 - 17834706
Alignment:
Q  1 gatttgtaaaatcttcccaagtagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgtgagaaagagaaattgaaggcttga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||    
T  17834435 gatttgtaaaatcttcccaagtagcagaaaatttaaggttgaagtgatgtgaagaaacaaaaaggaagaaaactgtgagaaagagaaattgaaggcttga 17834534  T
Q  101 atttagggttaattaggtaagtacctgtcccttgagaaattaaaggttgaaacgtagttttgatctgccgtagaagctatgaatctcagcttcataaaaa 200  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||    
T  17834535 atttaggggtaattaggtaagtacttgtcccttgagaaattaaaggttgaaacgtggttttgatctgccatagaagctatgaatctcagcttcatgaaaa 17834634  T
Q  201 ctgagttttgaagacagaaacgcgtttaacaaaattgctttttcattcatccaaacaacatggaaaagagca 272  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  17834635 ctgaattttgaagacagaaacgcgtttcacaaaattgctttttcattcatccaaacagcatggaaaagagca 17834706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 16543701 - 16543431
Alignment:
Q  1 gatttgtaaaatcttcccaagtagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgtgagaaagagaaattgaaggcttga 100  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||    
T  16543701 gatttgcaaaatcttccgaagtagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaagaaagaaaactgggagaaagaaaaattgaaggcttga 16543602  T
Q  101 atttagggttaattaggtaagtacctgtcccttgagaaattaaaggttgaaacgtagttttgatctgccgtagaagctatgaatctcagcttcataaaaa 200  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||    
T  16543601 atttaggggtaattaggtaagtacatgtcccttgagaaattaaaggttgaaaagtggttttgatctgccgtagaagctatgaatctcagcttcatgaaaa 16543502  T
Q  201 ctgagttttgaagacagaaacgcgtttaacaaaattgctttttcattcatccaaacaacatggaaaagagca 272  Q
    |||||||||| ||||| ||||| |||| |||||||||||||||||   ||||||||| ||| ||||||||||    
T  16543501 ctgagttttggagacaaaaacgtgtttcacaaaattgctttttcagctatccaaacagcat-gaaaagagca 16543431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 22477410 - 22477140
Alignment:
Q  1 gatttgtaaaatcttcccaagtagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgtgagaaagagaaattgaaggcttga 100  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  22477410 gatttgcaaaatcttcccaagtagcagaaaattgaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgggagaaagaaaaattgaaggcttga 22477311  T
Q  101 atttagggttaattaggtaagtacctgtcccttgagaaattaaaggttgaaacgtagttttgatctgccgtagaagctatgaatctcagcttcataaaaa 200  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||  ||||||| |||||||||||||||||||||||||||||| ||||    
T  22477310 atttaggggtaattaggtaagtacttgtcccttgagaaattaaaggttgaaaagtgattttgatttgccgtagaagctatgaatctcagcttcatgaaaa 22477211  T
Q  201 ctgagttttgaagacagaaacgcgtttaacaaaattgctttttcattcatccaaacaacatggaaaagagca 272  Q
    |||||||||| ||||| |||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||    
T  22477210 ctgagttttggagacaaaaacgcgtttcacaaaattgctttttcagtcatccaaacagcat-gaaaagagca 22477140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 41741209 - 41741324
Alignment:
Q  35 aaggttgaagtgatgtgaagtaatgaaaaggaagaaaact-gtgagaaagagaaattgaaggcttgaatttagggttaattaggt-aagtacctgtccct 132  Q
    ||||||||| |||||||||||||||||| ||||||||  | || |||||||||||||||||||||||||||| || ||||| ||| ||||||||| | ||    
T  41741209 aaggttgaaatgatgtgaagtaatgaaa-ggaagaaagtttgtaagaaagagaaattgaaggcttgaatttatgggtaatttggtaaagtacctgccact 41741307  T
Q  133 tgagaaattaaaggttg 149  Q
    |||||||||| ||||||    
T  41741308 tgagaaattataggttg 41741324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 32030048 - 32030019
Alignment:
Q  238 ctttttcattcatccaaacaacatggaaaa 267  Q
    ||||||||||||||||||||||||||||||    
T  32030048 ctttttcattcatccaaacaacatggaaaa 32030019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 35574090 - 35574360
Alignment:
Q  1 gatttgtaaaatcttcccaagtagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgtgagaaagagaaattgaaggcttga 100  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  35574090 gatttgcaaaatcttcccaagtagcagaaaattgaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgggagaaagaaaaattgaaggcttga 35574189  T
Q  101 atttagggttaattaggtaagtacctgtcccttgagaaattaaaggttgaaacgtagttttgatctgccgtagaagctatgaatctcagcttcataaaaa 200  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||  ||||||| |||||||||||||||||||||||||||||| ||||    
T  35574190 atttaggggtaattaggtaagtacttgtcccttgagaaattaaaggttgaaaagtgattttgatttgccgtagaagctatgaatctcagcttcatgaaaa 35574289  T
Q  201 ctgagttttgaagacagaaacgcgtttaacaaaattgctttttcattcatccaaacaacatggaaaagagca 272  Q
    |||||||||| ||||| |||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||    
T  35574290 ctgagttttggagacaaaaacgcgtttcacaaaattgctttttcagtcatccaaacagcat-gaaaagagca 35574360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 80 - 272
Target Start/End: Complemental strand, 35535581 - 35535390
Alignment:
Q  80 aaagagaaattgaaggcttgaatttagggttaattaggtaagtacctgtcccttgagaaattaaaggttgaaacgtagttttgatctgccgtagaagcta 179  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||| ||||| ||||||||||||||||     
T  35535581 aaagagaaattgaaggcttgaatttaggggtaattaggtaagtacctgtcacttgagaaattaaaggctgaaacgtggttttcatctgccgtagaagctc 35535482  T
Q  180 tgaatctcagcttcataaaaactgagttttgaagacagaaacgcgtttaacaaaattgctttttcattcatccaaacaacatggaaaagagca 272  Q
    |||||  ||||||||  ||||||| |||||| ||||| |||||||||| | ||| | ||||||||  ||||||||||| ||||||||||||||    
T  35535481 tgaattccagcttcaagaaaactgcgttttggagacataaacgcgtttcagaaactggctttttc-gtcatccaaacagcatggaaaagagca 35535390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 292336 - 292443
Alignment:
Q  35 aaggttgaagtgatgtgaagtaatgaaaaggaagaaaact-gtgagaaagagaaattgaaggcttgaatttagggttaattaggt-aagtacctgtccct 132  Q
    |||||||||||||||||||||||||||| ||||||||  | ||||||||||||||||||||||||||||||| || ||||| ||| ||||||||| | ||    
T  292336 aaggttgaagtgatgtgaagtaatgaaa-ggaagaaaggttgtgagaaagagaaattgaaggcttgaatttatgggtaatttggtaaagtacctgccact 292434  T
Q  133 tgagaaatt 141  Q
    |||||||||    
T  292435 tgagaaatt 292443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 267
Target Start/End: Complemental strand, 36204466 - 36204370
Alignment:
Q  172 agaagctatgaatctcagcttcata-aaaactga-gttttgaagacagaaacgcgtttaacaaaattgctttttcattcatccaaacaacatggaaaa 267  Q
    ||||||||||||||| ||||||| | |||||||  ||||||||| || || | ||||| ||||| |  ||||||||||||||||||||||||| ||||    
T  36204466 agaagctatgaatctgagcttcagagaaaactggcgttttgaag-caaaatcacgttttacaaactcactttttcattcatccaaacaacatgaaaaa 36204370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 272
Target Start/End: Complemental strand, 15606595 - 15606330
Alignment:
Q  8 aaaatcttcccaagtagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgtgagaaagagaaattgaaggcttgaatttagg 107  Q
    ||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  15606595 aaaatcttcacaattagtagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgtgagaaagagaatttgaaggcttgaatttaga 15606496  T
Q  108 gttaattaggtaagtacctgtcccttgagaaattaaaggttgaaacgtagttttgatctgccgtagaagctatgaatctcagcttcataaaaactgagtt 207  Q
    | |||||||||||||||||| | |||||||||||||||| |||||||| ||||| |||||||||||||||| |||||||||||||||  || |||| |||    
T  15606495 ggtaattaggtaagtacctgccacttgagaaattaaaggctgaaacgtggttttcatctgccgtagaagctctgaatctcagcttcaggaagactgtgtt 15606396  T
Q  208 ttgaagacagaaa-cgcgtttaacaaaattgctttttcattcatccaaacaacatggaaaagagca 272  Q
    ||| ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  15606395 ttggagacagaaaccgcgtttcacaaacttgctttttcattcatccaaacaacatggaaaagagca 15606330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 8 - 256
Target Start/End: Complemental strand, 15606947 - 15606698
Alignment:
Q  8 aaaatcttcccaagtagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgtgagaaagagaaattgaaggcttgaatttagg 107  Q
    ||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  15606947 aaaatcttcacaattagtagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgtgagaaagagaatttgaaggcttgaatttaga 15606848  T
Q  108 gttaattaggtaagtacctgtcccttgagaaattaaaggttgaaacgtagttttgatctgccgtagaagctatgaatctcagcttcataaaaactgagtt 207  Q
    | |||||||||||||||||| | |||||||||||||||| |||||||| ||||| |||||||||||||||| |||||||||||||||  || |||| |||    
T  15606847 ggtaattaggtaagtacctgccacttgagaaattaaaggctgaaacgtggttttcatctgccgtagaagctctgaatctcagcttcaggaagactgtgtt 15606748  T
Q  208 ttgaagacagaaa-cgcgtttaacaaaattgctttttcattcatccaaac 256  Q
    ||| ||||||||| ||||||| ||||| ||||||||||||||||||||||    
T  15606747 ttggagacagaaaccgcgtttcacaaacttgctttttcattcatccaaac 15606698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 16561613 - 16561501
Alignment:
Q  8 aaaatcttcccaagtagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgtgagaaagagaaattgaaggcttgaatttagg 107  Q
    ||||||||| ||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |    
T  16561613 aaaatcttcacaattagcagaaaatttaagtttgaagtgatgtgaagtaataaaaaggaagaaaactgtgagaaagagagattgaaggcttgaatttatg 16561514  T
Q  108 gttaattaggtaa 120  Q
    | ||||| |||||    
T  16561513 ggtaatttggtaa 16561501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 28987914 - 28988004
Alignment:
Q  61 aaaggaagaaaact-gtgagaaagagaaattgaaggcttgaatttagggttaattaggt-aagtacctgtcccttgagaaattaaaggttg 149  Q
    ||||||||||| || ||||||||||||||||| || |||||||||| || ||||||||| ||||||||| | |||||||||||||||||||    
T  28987914 aaaggaagaaagcttgtgagaaagagaaattggagacttgaatttatgggtaattaggtaaagtacctgccacttgagaaattaaaggttg 28988004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 5921002 - 5921179
Alignment:
Q  1 gatttgtaaaatcttcccaagtagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgtgagaaagagaaattgaaggcttga 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||    
T  5921002 gatttgcaaaatcttcccaagtagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactaggagaaagaaaaattgaaggcttga 5921101  T
Q  101 atttagggttaattaggtaagtacctgtcccttgagaaattaaaggttgaaacgtagttttgatctgccgtagaagct 178  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||||||||||| ||  ||||||||||||| |||||||    
T  5921102 atttaggggtaattaggtaagtacttgtaccttgagaaattaaaggttgaaaagtgattttgatctgccgcagaagct 5921179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 36307502 - 36307325
Alignment:
Q  1 gatttgtaaaatcttcccaagtagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgtgagaaagagaaattgaaggcttga 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||    
T  36307502 gatttgcaaaatcttcccaagtagcagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactaggagaaagaaaaattgaaggcttga 36307403  T
Q  101 atttagggttaattaggtaagtacctgtcccttgagaaattaaaggttgaaacgtagttttgatctgccgtagaagct 178  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||||||||||| ||  ||||||||||||| |||||||    
T  36307402 atttaggggtaattaggtaagtacttgtaccttgagaaattaaaggttgaaaagtgattttgatctgccgcagaagct 36307325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 23357746 - 23357661
Alignment:
Q  35 aaggttgaagtgatgtgaagtaatgaaaaggaagaaaact-gtgagaaagagaaattgaaggcttgaatttagggttaattaggtaa 120  Q
    |||||||||||||||||||||||||||| ||||||||  | ||||||||||||||||||||||||||||||| || ||||| |||||    
T  23357746 aaggttgaagtgatgtgaagtaatgaaa-ggaagaaaggttgtgagaaagagaaattgaaggcttgaatttatgggtaatttggtaa 23357661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 268
Target Start/End: Complemental strand, 23493587 - 23493326
Alignment:
Q  8 aaaatcttcccaagtagcagaaaatttaaggttgaa-gtgatgtgaagtaatgaaaaggaagaaaactgtgagaaagagaaattgaaggcttgaatttag 106  Q
    ||||||||| ||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23493587 aaaatcttcacaattagcagaaaatttaagtttgaaagtgatgtgaagtaatgaaaaggaagaaaactatgagaaagagaaattgaaggcttgaatttag 23493488  T
Q  107 ggttaattaggtaagtacctgtcccttgagaaattaaaggttgaaacgtagttttgatctgccgtagaagctatgaatctcagcttcataaaaactgagt 206  Q
    || |||||||||||||||||| | |||||||||||||||| | |||||| ||||| ||||||||||||||||  ||||  ||||||||  |||| || ||    
T  23493487 gggtaattaggtaagtacctgccacttgagaaattaaaggcttaaacgtggtttttatctgccgtagaagctccgaattccagcttcaagaaaattgcgt 23493388  T
Q  207 tttgaagacagaaa-cgcgtttaacaaaattgctttttcattcatccaaacaacatggaaaag 268  Q
    |||| ||||| ||| ||| ||| | ||| ||||||||||  ||||||||||| |||| |||||    
T  23493387 tttggagacataaaccgcttttcagaaacttgctttttc-gtcatccaaacagcatgtaaaag 23493326  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 16250842 - 16250967
Alignment:
Q  25 cagaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgtgagaaagagaaattgaaggcttgaatttagggttaattaggt-aagta 123  Q
    |||||||||||||||||||||||||||||||||| ||| | || |||  ||||||||||||||||||||||||||||||||  | ||||||||| |||||    
T  16250842 cagaaaatttaaggttgaagtgatgtgaagtaattaaaggaaaaaaagttgtgagaaagagaaattgaaggcttgaatttataggtaattaggtaaagta 16250941  T
Q  124 cctgtcccttgagaaattaaaggttg 149  Q
    |||| |  |||| |||||||||||||    
T  16250942 cctgccaattgacaaattaaaggttg 16250967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 20812475 - 20812446
Alignment:
Q  238 ctttttcattcatccaaacaacatggaaaa 267  Q
    ||||||||||||||||||||||||||||||    
T  20812475 ctttttcattcatccaaacaacatggaaaa 20812446  T

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Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 80 - 272
Target Start/End: Original strand, 36114637 - 36114820
Alignment:
Q  80 aaagagaaattgaaggcttgaatttagggttaattaggtaagtacctgtcccttgagaaattaaaggttgaaacgtagttttgatctgccgtagaagcta 179  Q
    |||||||||||||||||||||||||| || ||||||||||||| |||| | ||||| |||||||||| |||||||| ||||| ||||||||||           
T  36114637 aaagagaaattgaaggcttgaatttaagggtaattaggtaagtgcctgccacttgaaaaattaaaggctgaaacgtggttttcatctgccgta------- 36114729  T
Q  180 tgaatctcagcttcataaaaactgagttttgaagacagaaacgcgtttaacaaaattgctttttcattcatccaaacaacatggaaaagagca 272  Q
     |||| |||| |||| |||||||| |||||| ||||| |||||| ||| | ||| ||||||||||  |||||||||||||||| |||||||||    
T  36114730 -gaatttcagtttcaaaaaaactgtgttttggagacataaacgcctttcagaaacttgctttttc-gtcatccaaacaacatgaaaaagagca 36114820  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 29022731 - 29022616
Alignment:
Q  35 aaggttgaagtgatgtgaagtaatgaaaaggaagaaaact-gtgagaaagagaaattgaaggcttgaatttagggttaattagg-taagtacctgtccct 132  Q
    |||||||||||||||||||||||||||| ||||||||  | |||||||||||||||||||| |||||||||| || ||||| ||  ||||||||| | ||    
T  29022731 aaggttgaagtgatgtgaagtaatgaaa-ggaagaaaggttgtgagaaagagaaattgaagacttgaatttatgggtaatttggaaaagtacctgccact 29022633  T
Q  133 tgagaaattaaaggttg 149  Q
    ||| |||||| ||||||    
T  29022632 tgataaattagaggttg 29022616  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 267
Target Start/End: Original strand, 34344035 - 34344128
Alignment:
Q  174 aagctatgaatctcagcttcataaaaactga-gttttgaagacagaaacgcgtttaacaaaattgctttttcattcatccaaacaacatggaaaa 267  Q
    ||||||||||||| |||||||  |||||||| ||||||||| || || | ||||| ||||| |  ||||||||||||||||||||||||| ||||    
T  34344035 aagctatgaatctgagcttcaggaaaactgacgttttgaag-caaaatcacgttttacaaactcactttttcattcatccaaacaacatgaaaaa 34344128  T

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Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 19095528 - 19095437
Alignment:
Q  80 aaagagaaattgaaggcttgaatttagggttaattaggtaagtacctgtcccttgagaaattaaaggttgaaacgtagttttgatctgccgt 171  Q
    |||||||||||||||||||||||||| || |||||||||||||||||| | |||||||||||||||| |||||||| ||||| |||||||||    
T  19095528 aaagagaaattgaaggcttgaatttaagggtaattaggtaagtacctgccacttgagaaattaaaggctgaaacgtggttttcatctgccgt 19095437  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 3750247 - 3750120
Alignment:
Q  26 agaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgtgagaaagagaaattgaaggcttgaatttagggttaattaggt-aagtac 124  Q
    |||||||||||||||||||||||||||||||| ||||   |  |||| ||||||||||||||||||||||||| ||||||  | ||||||||| ||||||    
T  3750247 agaaaatttaaggttgaagtgatgtgaagtaacgaaacaaagaaaaattgtgagaaagagaaattgaaggcttaaatttataggtaattaggtaaagtac 3750148  T
Q  125 ctgtc-ccttgagaaattaaaggttgaa 151  Q
    ||  | | ||||||||||||||||||||    
T  3750147 ctaccactttgagaaattaaaggttgaa 3750120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 37634563 - 37634507
Alignment:
Q  26 agaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgtgagaaa 82  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37634563 agaaaatttaagtttgaagtgatgtgaagtaatgaaaaggaagaaaactgtgagaaa 37634507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 262
Target Start/End: Complemental strand, 42904067 - 42903970
Alignment:
Q  165 ctgccgtagaagctatgaatctcagcttcataaaaactgagttttgaagacagaaa-cgcgtttaacaaaattgctttttcattcatccaaacaacatg 262  Q
    |||||||||||||||||||||| ||||| |  |||||   |||| || |||| ||| | | ||| ||||| ||||||||||||||||||||||||||||    
T  42904067 ctgccgtagaagctatgaatctgagcttaagcaaaaccacgtttgga-gacaaaaatcacatttcacaaacttgctttttcattcatccaaacaacatg 42903970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1825 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1825
Description:

Target: scaffold1825; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 355 - 299
Alignment:
Q  26 agaaaatttaaggttgaagtgatgtgaagtaatgaaaaggaagaaaactgtgagaaa 82  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  355 agaaaatttaagtttgaagtgatgtgaagtaatgaaaaggaagaaaactgtgagaaa 299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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