View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20720_low_1 (Length: 415)
Name: NF20720_low_1
Description: NF20720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20720_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 347
Target Start/End: Original strand, 52828424 - 52828756
Alignment:
| Q |
15 |
agtagctaccatccaaactagatagatccaatcacttatcacttatacaatagtaacaataataacatgcctccaaccacgtgaaatccaatatcaaact |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
52828424 |
agtagctaccatccaaactagatagatccaatcacttatcacttatacaatagtaacaataataacttgtctccaaccacgtgaaatccaatatcaaact |
52828523 |
T |
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| Q |
115 |
aaaccagctataatgcataaattgactaattaaaaacagtgtgcaaaaataagcacttttctatagtactattctactaactactaatcagataccatac |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
52828524 |
aaaccagctataatgcataaattgactaattaaaaacagtgtgcaaaaataagcacttttctatagtactattgtactaactactaatcagataccatac |
52828623 |
T |
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| Q |
215 |
gttggtcctaatatcgttcatcatcaatctttgctaatttatgcaaataaagaatcatactagtctcactgtgggggtacagtcgacaaataaagaaatg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52828624 |
gttggtcctaatatcgttcatcatcaatctttgctaatttatgcaaataaagaatcatactaatctcactgtgggggtacagtcgacaaataaagaaatg |
52828723 |
T |
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| Q |
315 |
ctacaaactccatagtgaaatggtggttaatat |
347 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
52828724 |
ctacaaactccatagtgaaatggtggttaatat |
52828756 |
T |
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