View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20720_low_2 (Length: 274)
Name: NF20720_low_2
Description: NF20720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20720_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 28398130 - 28398373
Alignment:
| Q |
1 |
ccaccttgaagcattattctttctgatgtgtcatgattatgaaatcctttatctccattgattaatttgagttctaatcagaacaaactccataataaaa |
100 |
Q |
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| T |
28398130 |
ccaccttgaagcattattctttctgatgtgtcatgattatcaaatcctttatctccattgattaatttgagttatgatt-gaacaaactccataataaaa |
28398228 |
T |
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| Q |
101 |
atacacaagagttaggataaaaaatatacttaagaattatatattaatcatacgtcaaaacataatctcttaattaattatcatattaatcgattaacgc |
200 |
Q |
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| T |
28398229 |
atacacaagagtt-ggataaaaaatatacttaagaattatatattaatcat-cgtcaaaacataatctcttaattaattatcatattaatcgattaacgc |
28398326 |
T |
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| Q |
201 |
ctttgattgattcataagtgtaattatctatatgcgattatcatgtc |
247 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28398327 |
ctttgattgattcataagtgtaattgtctatatgcgattatcatgtc |
28398373 |
T |
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