View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20721_high_17 (Length: 436)
Name: NF20721_high_17
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 6 - 256
Target Start/End: Complemental strand, 31454488 - 31454232
Alignment:
| Q |
6 |
agtgagatgaagacacttaacaaacacactcatttaacacaaacaaaacctataaattcatggccactgaaaaatcttaacctaccctaaagggnnnnnn |
105 |
Q |
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| T |
31454488 |
agtgacatgaagacacttaacaaacacactcatttaacacaaacaaaacctataatttcatggccactgaaaaatcttaacctaccctaaagggaaaaaa |
31454389 |
T |
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| Q |
106 |
nnnn-------ctgtatttgatcatatatttcaatctatcatagtacaagttatgacaaaggttagaactatgtgaaaaaattggttttactttcatata |
198 |
Q |
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| T |
31454388 |
aaaaaaaaaaactgtatttgatcatatatttcaatctatcatagtacaagttatgacaaaggttagaactatgtgaaaaaattggttttactttcatata |
31454289 |
T |
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| Q |
199 |
tatgtgaaagnnnnnnnnncagtttaaattttcatgacagtttcggaagttacacaaa |
256 |
Q |
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| T |
31454288 |
tatgtgaaa-aaaaaaaaacagtttaaagtttcatgacagtttcggaagttacacaaa |
31454232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 315 - 419
Target Start/End: Complemental strand, 31454170 - 31454066
Alignment:
| Q |
315 |
tgaagggtaccttcatcttgtggtaatgattgagcgttggatccaaacatggagaaacaattgaaagccatgaacaaaaagaacaacatagatacatgtt |
414 |
Q |
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| T |
31454170 |
tgaagggtaccttcatcttgtggtaatgattgagcgttggatccaaacatggagaaacaattgaaagccaagaacaaaaagaacaacatagatacatgtt |
31454071 |
T |
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| Q |
415 |
tgaag |
419 |
Q |
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||||| |
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| T |
31454070 |
tgaag |
31454066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 35710355 - 35710309
Alignment:
| Q |
110 |
ctgtatttgatcatatatttcaatctatcatagtacaagttatgaca |
156 |
Q |
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| T |
35710355 |
ctgtatttgatcgtatatgtcaatctattatagtacaagttatgaca |
35710309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 75410 - 75364
Alignment:
| Q |
110 |
ctgtatttgatcatatatttcaatctatcatagtacaagttatgaca |
156 |
Q |
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| T |
75410 |
ctgtatttgatcatacatgtcaatctattatagtacaagttatgaca |
75364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 41361741 - 41361697
Alignment:
| Q |
110 |
ctgtatttgatcatatatttcaatctatcatagtacaagttatga |
154 |
Q |
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| T |
41361741 |
ctgtatttgatcgtatatgtcaatctattatagtacaagttatga |
41361697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 20511029 - 20510984
Alignment:
| Q |
111 |
tgtatttgatcatatatttcaatctatcatagtacaagttatgaca |
156 |
Q |
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||||||||||| ||||| ||||| ||| |||||||||||||||||| |
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| T |
20511029 |
tgtatttgatcgtatatgtcaatatattatagtacaagttatgaca |
20510984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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