View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20721_high_18 (Length: 433)
Name: NF20721_high_18
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_high_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 31225609 - 31226011
Alignment:
| Q |
18 |
gaaacatcatcaggagttgtgttatgggggatatctgagatggtaaagaacccaaagataatgaaggaagcacaagctgaagtaagaaaaatgtttgata |
117 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31225609 |
gaaacgtcatcaggggttgtgttatgggggatatctgagatggtaaagaacccaaagataatggaggaagcacaagctgaagtaagaaacatgtttgata |
31225708 |
T |
|
| Q |
118 |
aaaaggggcatgtcgatgaaacagagttgcaccaattgatatacttaaagtctataattagagaaacattgaggctacatccatctgcacctttgttggt |
217 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31225709 |
aaaagggacatgtcgatgaaacagagttgcaccaattaatatacttaaagtctataattagagaaacattgagattacatccatctgcacctttgttggt |
31225808 |
T |
|
| Q |
218 |
tccaagagaaagtagagagagatgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaagg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31225809 |
tccaagagaaagtagagagagatgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaagg |
31225908 |
T |
|
| Q |
318 |
tattgggcagaagctgagagttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaactttgaatacacaccgttcggtgctggaa |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
31225909 |
tattgggcagaagctgagagttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaattttgaatacataccgttcggtgctggaa |
31226008 |
T |
|
| Q |
418 |
gaa |
420 |
Q |
| |
|
||| |
|
|
| T |
31226009 |
gaa |
31226011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 31188169 - 31187767
Alignment:
| Q |
18 |
gaaacatcatcaggagttgtgttatgggggatatctgagatggtaaagaacccaaagataatgaaggaagcacaagctgaagtaagaaaaatgtttgata |
117 |
Q |
| |
|
|||||||| || || | |||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
31188169 |
gaaacatcgtccggggctgtgctatgggggatatctgagatggtaaagaacccaaagataatggagaaagcacaagctgaagtaagaaaagtgtttgata |
31188070 |
T |
|
| Q |
118 |
aaaaggggcatgtcgatgaaacagagttgcaccaattgatatacttaaagtctataattagagaaacattgaggctacatccatctgcacctttgttggt |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
31188069 |
aaaaggggtatgtcgatgaaacagagttgcaccaattgatatacttaaagtctataatcagagaaacattgaggctacatccttctgtgcctttgttggt |
31187970 |
T |
|
| Q |
218 |
tccaagagaaagtagagagagatgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaagg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31187969 |
tccaagagaaagtagagagagatgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaagg |
31187870 |
T |
|
| Q |
318 |
tattgggcagaagctgagagttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaactttgaatacacaccgttcggtgctggaa |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
31187869 |
tattgggcagaagctgagagttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaattttgaatacataccgttcggtgctggaa |
31187770 |
T |
|
| Q |
418 |
gaa |
420 |
Q |
| |
|
||| |
|
|
| T |
31187769 |
gaa |
31187767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 31178106 - 31177704
Alignment:
| Q |
18 |
gaaacatcatcaggagttgtgttatgggggatatctgagatggtaaagaacccaaagataatgaaggaagcacaagctgaagtaagaaaaatgtttgata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31178106 |
gaaacatcatcaggagttgtgttatgggggatatctgagatgataaagaacccaaagataatgaaggaagcacaagctgaagtaagaaaagtgtttgata |
31178007 |
T |
|
| Q |
118 |
aaaaggggcatgtcgatgaaacagagttgcaccaattgatatacttaaagtctataattagagaaacattgaggctacatccatctgcacctttgttggt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| ||| | ||||| ||| |||||||||| | |
|
|
| T |
31178006 |
aaaaggggcatgtcgatgaaacagagttgcaccatttgatatacttaaagtctataatcaaagaaacattaaggttgcatccttctttacctttgttgat |
31177907 |
T |
|
| Q |
218 |
tccaagagaaagtagagagagatgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaagg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31177906 |
tccaagagaaagtagagagagatgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaagg |
31177807 |
T |
|
| Q |
318 |
tattgggcagaagctgagagttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaactttgaatacacaccgttcggtgctggaa |
417 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |
|
|
| T |
31177806 |
tattgggcagaagctgagagttttaaacccgagaggtttgttaatagcacaattgatttcaaaggtacaaactttgagtacataccgttcggtgctggaa |
31177707 |
T |
|
| Q |
418 |
gaa |
420 |
Q |
| |
|
||| |
|
|
| T |
31177706 |
gaa |
31177704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 41337511 - 41337913
Alignment:
| Q |
18 |
gaaacatcatcaggagttgtgttatgggggatatctgagatggtaaagaacccaaagataatgaaggaagcacaagctgaagtaagaaaaatgtttgata |
117 |
Q |
| |
|
|||||||| |||||| ||||| |||||| ||| || |||||| |||||||||||| ||||| | |||||||||| ||| ||||||| | ||||||||| |
|
|
| T |
41337511 |
gaaacatcgtcaggaattgtgctatgggcgatgtcggagatgataaagaacccaatagtaatggaagaagcacaagttgaggtaagaagagtgtttgata |
41337610 |
T |
|
| Q |
118 |
aaaaggggcatgtcgatgaaacagagttgcaccaattgatatacttaaagtctataattagagaaacattgaggctacatccatctgcacctttgttggt |
217 |
Q |
| |
|
|||||||| |||| || || ||||||||||| || |||| ||||||||||| | | || | ||||||||| ||||||||||| ||| |||||||||||| |
|
|
| T |
41337611 |
aaaaggggtatgtagacgagacagagttgcaacagttgacatacttaaagtgtgtcatcaaagaaacatttaggctacatcctactgtacctttgttggt |
41337710 |
T |
|
| Q |
218 |
tccaagagaaagtagagagagatgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaagg |
317 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||| || | |
|
|
| T |
41337711 |
tccaagagaaagtagagagagatgtgaaatcaatgggtatgagatcccagctaagacaagggttgctgtcaatgtttgggcaattggaagagatccaaag |
41337810 |
T |
|
| Q |
318 |
tattgggcagaagctgagagttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaactttgaatacacaccgttcggtgctggaa |
417 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| ||||||||| | ||| || |||||||||| |
|
|
| T |
41337811 |
tattgggttgaagctgagagttttaaacctgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaattaataccatttggtgctggaa |
41337910 |
T |
|
| Q |
418 |
gaa |
420 |
Q |
| |
|
||| |
|
|
| T |
41337911 |
gaa |
41337913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 37 - 420
Target Start/End: Original strand, 41328790 - 41329173
Alignment:
| Q |
37 |
tgttatgggggatatctgagatggtaaagaacccaaagataatgaaggaagcacaagctgaagtaagaaaaatgtttgataaaaaggggcatgtcgatga |
136 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||||||||| ||||| | |||||||||| ||||||||| | | ||||||||||||||| | |||| ||||| |
|
|
| T |
41328790 |
tgttatgggcgatgtctgagatggtgaagaacccaaaggtaatggaagaagcacaagatgaagtaagtagagtgtttgataaaaaggagtatgtggatga |
41328889 |
T |
|
| Q |
137 |
aacagagttgcaccaattgatatacttaaagtctataattagagaaacattgaggctacatccatctgcacctttgttggttccaagagaaagtagagag |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | || | ||||||||||||| | ||||| |||||| ||||| ||||||||||||||||| ||| |
|
|
| T |
41328890 |
gacagagttgcaccaattgatatacttaaagtccgtcatcaaagaaacattgaggttgcatcccgttgcaccattgttagttccaagagaaagtagggag |
41328989 |
T |
|
| Q |
237 |
agatgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaaggtattgggcagaagctgaga |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| || | |||| |||||| |||||||||||| ||||||||||| |||||||||| |
|
|
| T |
41328990 |
agatgccaaatcaatgggtatgaaatcccagctaagacaagggtaatggttaatgcttgggctattggaagagattcaaggtattgggttgaagctgaga |
41329089 |
T |
|
| Q |
337 |
gttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaactttgaatacacaccgttcggtgctggaagaa |
420 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||||||||||||||||||| |||| |||| || ||| || ||||||||||||| |
|
|
| T |
41329090 |
gttttaaacctgagaggtttgttaatagtccaattgatttcaaaggcacggacttcgaattcataccatttggtgctggaagaa |
41329173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 35 - 420
Target Start/End: Original strand, 41324811 - 41325196
Alignment:
| Q |
35 |
tgtgttatgggggatatctgagatggtaaagaacccaaagataatgaaggaagcacaagctgaagtaagaaaaatgtttgataaaaaggggcatgtcgat |
134 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||| | ||| | |||||||||||||| ||||||| | | ||||||| |||||| ||| ||| |
|
|
| T |
41324811 |
tgtgttatgggcgatatctgagatggtaaagaatccaaaggtgatggaagaagcacaagctgaggtaagaagagtttttgataggaaggggtttgtggat |
41324910 |
T |
|
| Q |
135 |
gaaacagagttgcaccaattgatatacttaaagtctataattagagaaacattgaggctacatccatctgcacctttgttggttccaagagaaagtagag |
234 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||| | || | |||||| |||||||||||||| | | ||| ||||| |||||||||||||||| | |
|
|
| T |
41324911 |
gagacagagttgcaccaattgatatacttaaaatctgtgatcaaggaaacaatgaggctacatccaaccgtaccgttgttacttccaagagaaagtaggg |
41325010 |
T |
|
| Q |
235 |
agagatgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaaggtattgggcagaagctga |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| || | |||| |||||| |||||||||||| ||||||||||| || ||||| |
|
|
| T |
41325011 |
agagatgccaaatcaatgggtatgaaatcccagctaagacaagggtcatggttaatgcttgggctattggaagagatccaaggtattgggttgatgctga |
41325110 |
T |
|
| Q |
335 |
gagttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaactttgaatacacaccgttcggtgctggaagaa |
420 |
Q |
| |
|
||||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||||||| ||| || ||||||||||||| |
|
|
| T |
41325111 |
aagttttaaacctgagaggtttgttaatagtccaattgatttcaaaggcacagactttgaatacataccatttggtgctggaagaa |
41325196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 42 - 418
Target Start/End: Original strand, 41316754 - 41317130
Alignment:
| Q |
42 |
tgggggatatctgagatggtaaagaacccaaagataatgaaggaagcacaagctgaagtaagaaaaatgtttgataaaaaggggcatgtcgatgaaacag |
141 |
Q |
| |
|
|||| ||| |||| ||||||||| ||| |||| ||||| | ||||||||||||||||||||| | |||||||||||||||| |||| ||||| |||| |
|
|
| T |
41316754 |
tgggcgatgtctgcgatggtaaaaaactcaaatgtaatggaacaagcacaagctgaagtaagaagagtgtttgataaaaagggatatgtggatgagacag |
41316853 |
T |
|
| Q |
142 |
agttgcaccaattgatatacttaaagtctataattagagaaacattgaggctacatccatctgcacctttgttggttccaagagaaagtagagagagatg |
241 |
Q |
| |
|
||||| ||||||||||||||||||||||| | || | ||||||||||||| | |||| ||| || ||||| ||||||||||||||||| |||||||| |
|
|
| T |
41316854 |
agttgtaccaattgatatacttaaagtctgtcatcaaagaaacattgaggttgtatcctgttgctccattgttagttccaagagaaagtagggagagatg |
41316953 |
T |
|
| Q |
242 |
ccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaaggtattgggcagaagctgagagtttt |
341 |
Q |
| |
|
|||||||||||| ||||| || ||||| || ||||| |||||| |||||| |||||| |||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
41316954 |
ccaaatcaatggttatgagattccagccaagacaagggttgctgtcaatgcttgggctattggaagagatccaaggtattgggttgaagctgagagtttt |
41317053 |
T |
|
| Q |
342 |
aaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaactttgaatacacaccgttcggtgctggaag |
418 |
Q |
| |
|
||||||||||||||| | |||||| ||||||||||||||||||| |||| |||| || ||| || ||||||||||| |
|
|
| T |
41317054 |
aaacctgagaggtttgttaatagcccaattgatttcaaaggcacggacttcgaattcataccatttggtgctggaag |
41317130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 37 - 418
Target Start/End: Original strand, 41332723 - 41333104
Alignment:
| Q |
37 |
tgttatgggggatatctgagatggtaaagaacccaaagataatgaaggaagcacaagctgaagtaagaaaaatgtttgataaaaaggggcatgtcgatga |
136 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||| || || | |||||||| ||||||||||| | ||||||||||||||||| |||| ||||| |
|
|
| T |
41332723 |
tgttatgggcgatgtctgagatggtaaagaacccaaaggtattggaagaagcacagattgaagtaagaagagtgtttgataaaaaggggtatgtggatga |
41332822 |
T |
|
| Q |
137 |
aacagagttgcaccaattgatatacttaaagtctataattagagaaacattgaggctacatccatctgcacctttgttggttccaagagaaagtagagag |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | | | ||||||||||||| ||||||| |||||| ||||| ||||||||||||||| || |
|
|
| T |
41332823 |
gtcagagttgcaccaattgatatacttaaagtctgtcgtcaaagaaacattgaggttacatcccgttgcaccattgttaattccaagagaaagtatgaag |
41332922 |
T |
|
| Q |
237 |
agatgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaaggtattgggcagaagctgaga |
336 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| || | |||| |||||| |||||||||||| ||||||||||| |||||||||| |
|
|
| T |
41332923 |
ccatgccaaattaatgggtatgaaatcccagctaagacaagggtaatggttaatgcttgggctattggaagagattcaaggtattgggttgaagctgaga |
41333022 |
T |
|
| Q |
337 |
gttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaactttgaatacacaccgttcggtgctggaag |
418 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| ||||||||||| |||| |||| || ||| || ||||||||||| |
|
|
| T |
41333023 |
gttttaaacctgagaggtttgttaatagcacaattgaattcaaaggcacggacttcgaattcataccatttggtgctggaag |
41333104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 54 - 418
Target Start/End: Original strand, 41310967 - 41311335
Alignment:
| Q |
54 |
gagatggtaaagaacccaaagataatgaaggaagcacaagctgaagtaagaaaaatgtttgataaaaaggggcat----gtcgatgaaacagagttgcac |
149 |
Q |
| |
|
||||||||||||||||||||| ||||| | |||||||||| ||||||||||| | ||||||||||||||||| || || ||||| | ||||||||| |
|
|
| T |
41310967 |
gagatggtaaagaacccaaaggtaatggaagaagcacaagttgaagtaagaagagtgtttgataaaaaggggtatatatgtggatgagatggagttgcac |
41311066 |
T |
|
| Q |
150 |
caattgatatacttaaagtctataattagagaaacattgaggctacatccatctgcacctttgttggttccaagagaaagtagagagagatgccaaatca |
249 |
Q |
| |
|
| |||||||||||||||| | | || | ||||||| ||||| | |||||| |||||| ||||| ||||||||||||||||| |||||||||||||| | |
|
|
| T |
41311067 |
ctgttgatatacttaaagtttgtcatcaaagaaacactgaggttgcatccagttgcaccattgttagttccaagagaaagtagggagagatgccaaatta |
41311166 |
T |
|
| Q |
250 |
atgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaaggtattgggcagaagctgagagttttaaacctga |
349 |
Q |
| |
|
|| || |||| |||||| ||| |||||||| | ||| | || |||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
41311167 |
ataggcatgagatcccaattaagacaagagtcgttattattgcttgggctattggaagagatccaaggtattgggttgaagctgagagatttaaacctga |
41311266 |
T |
|
| Q |
350 |
gaggtttctcaatagcacaattgatttcaaaggcacaaactttgaatacacaccgttcggtgctggaag |
418 |
Q |
| |
|
||||||| | |||||||||||||| ||||||||||| |||||||||||| ||| || ||||||||||| |
|
|
| T |
41311267 |
gaggtttgttaatagcacaattgaattcaaaggcacggactttgaatacataccatttggtgctggaag |
41311335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 41286897 - 41287296
Alignment:
| Q |
18 |
gaaacatcatcaggagttgtgttatgggggatatctgagatggtaaagaacccaaagataatgaaggaagcacaagctgaagtaagaaaaatgtttgata |
117 |
Q |
| |
|
|||||||| ||||| | ||||||||| ||||| ||||||||||||||||| |||||| | ||| | ||||||||||||| ||||||| | ||||||||| |
|
|
| T |
41286897 |
gaaacatcgtcaggggctgtgttatgagggatgtctgagatggtaaagaatccaaaggtgatggaa-aagcacaagctgaggtaagaagagtgtttgata |
41286995 |
T |
|
| Q |
118 |
aaaaggggcatgtcgatgaaacagagttgcaccaattgatatacttaaagtctataattagagaaacattgaggctacatccatctgcacctttgttggt |
217 |
Q |
| |
|
||||||| |||| | ||| |||||||||||||||||||||||||| |||||| | || | ||||||| ||||| | ||||| || ||| |||||| | |
|
|
| T |
41286996 |
gaaaggggtatgtggttgagacagagttgcaccaattgatatacttgaagtctgttatcaaagaaacaatgaggttgcatcctgctataccattgttgat |
41287095 |
T |
|
| Q |
218 |
tccaagagaaagtagagagagatgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaagg |
317 |
Q |
| |
|
|||||||||||||| || ||||||||| ||||| ||||| ||||| || || || || ||| | |||||| ||||||||||||||||||| ||| |
|
|
| T |
41287096 |
tccaagagaaagtatgaagccatgccaaattaatggatatgatatcccggccaagactagggttcttgtcaatgcttgggcaattggaagagatccaaga |
41287195 |
T |
|
| Q |
318 |
tattgggcagaagctgagagttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaactttgaatacacaccgttcggtgctggaa |
417 |
Q |
| |
|
||||||| |||||||||| ||| ||||| ||||||||| | ||||| ||||||||||||| |||||| |||| ||||||| ||| || |||||||||| |
|
|
| T |
41287196 |
tattgggtcgaagctgagaatttcaaacccgagaggtttgttaatagtccaattgatttcaatggcacagacttcgaatacataccatttggtgctggaa |
41287295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 35 - 418
Target Start/End: Original strand, 41366900 - 41367283
Alignment:
| Q |
35 |
tgtgttatgggggatatctgagatggtaaagaacccaaagataatgaaggaagcacaagctgaagtaagaaaaatgtttgataaaaaggggcatgtcgat |
134 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| || | | ||||| | | |||||||| ||| ||||||| | |||||||||||||||| |||| || |
|
|
| T |
41366900 |
tgtgttatggacgatgtctgagatggtaaagaatccgatggtaatggaagcagcacaagttgaggtaagaagagtgtttgataaaaagggatatgtgaat |
41366999 |
T |
|
| Q |
135 |
gaaacagagttgcaccaattgatatacttaaagtctataattagagaaacattgaggctacatccatctgcacctttgttggttccaagagaaagtagag |
234 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| || | || | ||||||| ||||| | ||||| ||| ||| || ||| ||||||||||||||| |
|
|
| T |
41367000 |
gagacagagttgcaccaattgatatacttaaaatccgtcatcaaagaaacaatgaggttgcatccttctataccattattgattccaagagaaagtacga |
41367099 |
T |
|
| Q |
235 |
agagatgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaaggtattgggcagaagctga |
334 |
Q |
| |
|
|| ||||||||| ||| | ||||| ||||||||||| ||||| || | | |||| |||||| |||||||||||| |||||||||| || || | |
|
|
| T |
41367100 |
agccatgccaaataaatagatatgatatcccagctaagacaagggtcattgttaatgcttgggctattggaagagatccgaggtattgggttgatgccaa |
41367199 |
T |
|
| Q |
335 |
gagttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaactttgaatacacaccgttcggtgctggaag |
418 |
Q |
| |
|
||||||||| |||||||| ||||| |||||| ||||||||||||||||||| |||||||||||| ||| || ||||||||||| |
|
|
| T |
41367200 |
gagttttaagcctgagagatttcttaatagccgaattgatttcaaaggcacagactttgaatacataccatttggtgctggaag |
41367283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 219 - 418
Target Start/End: Original strand, 41305243 - 41305442
Alignment:
| Q |
219 |
ccaagagaaagtagagagagatgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaaggt |
318 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||| |||||| || |||||||| || || ||| | |||||| |||||| |||||||||||| || || |
|
|
| T |
41305243 |
ccaagagaaagtagggagagttgccaaatcaatgagtatgatattccagctaagactagggttattgtcaatgcttgggcgattggaagagatccaaagt |
41305342 |
T |
|
| Q |
319 |
attgggcagaagctgagagttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaactttgaatacacaccgttcggtgctggaag |
418 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| | |||||| |||||||||||||||||||| |||||||||||| ||| || ||||||||||| |
|
|
| T |
41305343 |
attgggttgaagctgagagttttaaacccgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaatacataccatttggtgctggaag |
41305442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 33 - 185
Target Start/End: Original strand, 41431960 - 41432112
Alignment:
| Q |
33 |
gttgtgttatgggggatatctgagatggtaaagaacccaaagataatgaaggaagcacaagctgaagtaagaaaaatgtttgataaaaaggggcatgtcg |
132 |
Q |
| |
|
||||| ||||||| ||| |||||||||| |||||||| || | ||| | |||||||||||||| ||||||| | ||||||||| || ||| |||| | |
|
|
| T |
41431960 |
gttgtcttatgggcgatgtctgagatggcgaagaacccgaatgtgatggaagaagcacaagctgaggtaagaagagtgtttgatatgaaagggtatgtgg |
41432059 |
T |
|
| Q |
133 |
atgaaacagagttgcaccaattgatatacttaaagtctataattagagaaaca |
185 |
Q |
| |
|
|||| || ||||||||| ||||||||||||| |||||||| || | ||||||| |
|
|
| T |
41432060 |
atgagactgagttgcactaattgatatacttgaagtctatcatcaaagaaaca |
41432112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 14235866 - 14235962
Alignment:
| Q |
34 |
ttgtgttatgggggatatctgagatggtaaagaacccaaagataatgaaggaagcacaagctgaagtaagaaaaatgtttgataaaaaggggcatgt |
130 |
Q |
| |
|
||||||||| |||||| |||||||| ||||||||||| | | | ||| | |||||||||||||| ||||||| |||||||| ||||||| |||| |
|
|
| T |
14235866 |
ttgtgttattggggatgtctgagattgtaaagaaccctagggtgatggaagaagcacaagctgaggtaagaagggagtttgatagaaaggggtatgt |
14235962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 34 - 418
Target Start/End: Complemental strand, 17248970 - 17248586
Alignment:
| Q |
34 |
ttgtgttatgggggatatctgagatggtaaagaacccaaagataatgaaggaagcacaagctgaagtaagaaaaatgtttgataaaaaggggcatgtcga |
133 |
Q |
| |
|
||||||||||||| || |||||||| |||| ||||||||| | ||| | | |||||||||||| ||||||| | ||||||| ||||||| |||| || |
|
|
| T |
17248970 |
ttgtgttatggggaatgtctgagataataaaaaacccaaaggtgatggaagcagcacaagctgaggtaagaagtgtttttgatagaaaggggtatgtaga |
17248871 |
T |
|
| Q |
134 |
tgaaacagagttgcaccaattgatatacttaaagtctataattagagaaacattgaggctacatccatctgcacctttgttggttccaagagaaagtaga |
233 |
Q |
| |
|
|||||| |||||| | ||||| ||||||||||| ||| | || | ||||||| ||||||| ||||| || ||| |||||| |||| ||| ||||||| |
|
|
| T |
17248870 |
tgaaacggagttggatcaattaatatacttaaattctgtcatcaaagaaacactgaggctgcatcctattgtaccattgttgattcctagacaaagtagg |
17248771 |
T |
|
| Q |
234 |
gagagatgccaaatcaatgggtatgaaatcccagctaaaacaagagttgctatcaatgtttgggcaattggaagagatgaaaggtattgggcagaagctg |
333 |
Q |
| |
|
|| | ||| | |||||| |||||||| || |||||||| ||||| |||||| | |||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
17248770 |
gaaaaatgtcgaatcaacgggtatgatattccagctaagacaagggttgctgttaatgtttgggcaattggaagagatcaaaggtattgggttgaagctg |
17248671 |
T |
|
| Q |
334 |
agagttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaactttgaatacacaccgttcggtgctggaag |
418 |
Q |
| |
|
||||||| |||||||| |||||| | |||||| |||||||||||||||||| || || ||||||| ||| || ||||||||||| |
|
|
| T |
17248670 |
agagtttcaaacctgaaaggttttttaatagcccaattgatttcaaaggcatgaatttcgaatacataccatttggtgctggaag |
17248586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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