View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20721_high_21 (Length: 412)
Name: NF20721_high_21
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_high_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 10 - 396
Target Start/End: Original strand, 25895984 - 25896370
Alignment:
| Q |
10 |
aagaaaatgcagatgggaccctaaattagtaaaaagccatgttagtagcctagggttatcatctacttcatggttttgattatcatgaaactttttctcc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25895984 |
aagaaaatgcagatgggaccctaaattagtaaaaagccaggttagtagcctagggttatcatctacttcatggttttgattatcatgaaactttttctcc |
25896083 |
T |
|
| Q |
110 |
agtcataaagcctgctgttactatcagattgatcctcacattggctctcacatataagtggccacttcagcagctggacattaataatgcctttctcaat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25896084 |
agtcataaagcctgctgttactatcagattgatcctcacattggctctcacatataagtggccacttcagcagctggacattaataatgcctttctcaat |
25896183 |
T |
|
| Q |
210 |
ggcattcttgttgaggaagtctatatggaacaaccccctgggtttgtctcctctgaccctaatctagtttgtcatctgcacaaggctttatatggcttga |
309 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25896184 |
ggcattcttgatgaggaagtctatatggaacaaccccctgggtttgtctcctctgatcctaatctagtttgtcatctgcacaaggctttatatggcttga |
25896283 |
T |
|
| Q |
310 |
aacaagcacccagacaatggtttgaaaggctgaaaggcactctcattgagtttggcttctgtcccagcaagcatgactcttctcttt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
25896284 |
aacaagcacccagacaatggtttgaaaggctgaaaggcactctcattgagtttggcttctgtcacagcaagcgtgactcttctcttt |
25896370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 39581737 - 39581818
Alignment:
| Q |
160 |
catataagtggccacttcagcagctggacattaataatgcctttctcaatggcattcttgttgaggaagtctatatggaaca |
241 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||||||||||| | |||||||| |||| || ||||| |||||| |||| |
|
|
| T |
39581737 |
catacaagtggccacttcaacagctggatgttaataatgccttcttaaatggcatccttgaggaagaagtgtatatgcaaca |
39581818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University