View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20721_high_22 (Length: 409)
Name: NF20721_high_22
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 25855497 - 25855890
Alignment:
| Q |
1 |
tctttacattaaacataaaagttgggctaaacatattttggaattagggaggttatttatcatctaatttgtgnnnnnnnnnna---ctagtgttataga |
97 |
Q |
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| T |
25855497 |
tctttacattaaacataaaagttgggctaaacatattttggaattagggaggttatttatcatctaatttgtgtttcttttttttggctagtgttataga |
25855596 |
T |
|
| Q |
98 |
cgctttggaatcgatgctgatttatttgattgaaggatgaacttcttcttataacaatgcacaagtccgaaattcattgaagatttgcaaagtctaaaga |
197 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
25855597 |
cgctttggaactgatgctgatttatttgattgaaggatgaacttcttcttataacaatgcacaagtccgaaattcattgaagatttgcgaagcctaaaga |
25855696 |
T |
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| Q |
198 |
gaagacnnnnnnngttaaagagtacttattttgcgaatatggttaatcatgaaaatgnnnnnnnnnnnnnnactctttgaaaatgtaactggcaataaag |
297 |
Q |
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| T |
25855697 |
gaagacaaaaaa-gttaaagagtatttattttgcgaatatggttaatcatgaaaatgttttttttttt---actctttgaaaatgtaactggcaataaag |
25855792 |
T |
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| Q |
298 |
tggagaaatgtgaaactttggatgaagagaggatatgatgtgtaaaatttgtatccatctaataccacatcgagcagtgggaagaaaaatgagattag |
395 |
Q |
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| T |
25855793 |
tggagaaatgtgaaactttggatgaagagaggatatgatgtgcaaaatttgtatccatctaataccacatcgagcaatgggaagaaaattgagattag |
25855890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 27049413 - 27049343
Alignment:
| Q |
118 |
tttatttgattgaaggatgaacttcttcttataacaatgcacaagtccgaaattcattgaagatttgcaaa |
188 |
Q |
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||||||||| ||||||||||||||| ||||| |||||||| |||| | ||||| || || |||||||||| |
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| T |
27049413 |
tttatttgacggaaggatgaacttctccttatgacaatgcataagttcaaaatttatggaggatttgcaaa |
27049343 |
T |
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