View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20721_high_25 (Length: 377)

Name: NF20721_high_25
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20721_high_25
NF20721_high_25
[»] chr4 (9 HSPs)
chr4 (1-370)||(26270891-26271260)
chr4 (202-370)||(3110514-3110682)
chr4 (15-96)||(21496591-21496672)
chr4 (42-103)||(47892596-47892657)
chr4 (54-94)||(41246405-41246445)
chr4 (17-94)||(7424216-7424293)
chr4 (16-103)||(54069229-54069315)
chr4 (39-97)||(9076532-9076590)
chr4 (20-64)||(24531850-24531894)
[»] chr7 (4 HSPs)
chr7 (40-103)||(42281934-42281997)
chr7 (23-65)||(30777809-30777851)
chr7 (38-94)||(5361124-5361180)
chr7 (39-103)||(5854647-5854711)
[»] chr2 (2 HSPs)
chr2 (225-350)||(44063405-44063530)
chr2 (16-93)||(35225008-35225085)
[»] chr3 (3 HSPs)
chr3 (39-103)||(49895909-49895973)
chr3 (39-97)||(2373788-2373846)
chr3 (57-97)||(21873712-21873752)
[»] scaffold0110 (1 HSPs)
scaffold0110 (39-97)||(33173-33231)
[»] chr5 (4 HSPs)
chr5 (23-100)||(24993819-24993896)
chr5 (21-61)||(24917746-24917786)
chr5 (21-61)||(24993656-24993696)
chr5 (43-103)||(14731860-14731920)
[»] chr1 (3 HSPs)
chr1 (16-69)||(4117685-4117738)
chr1 (23-97)||(24143718-24143792)
chr1 (16-97)||(12241347-12241428)
[»] chr6 (1 HSPs)
chr6 (16-94)||(7145581-7145659)


Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 26270891 - 26271260
Alignment:
Q  1 aaatttggaccgagggattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaaga 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26270891 aaattcggaccgagggattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaaga 26270990  T
Q  101 ccatcttcgttatttactcgnnnnnnnngtattgaaaatttaattattgcactatcgatgtatgtataccttttatgttcacagtaacagaaagggagag 200  Q
    |||||||||||||| |||||        ||||||||||||||||||||||||||| || || ||||||| ||||||||||||||||||||||||||||||    
T  26270991 ccatcttcgttattcactcgttttttttgtattgaaaatttaattattgcactattgaggtgtgtatactttttatgttcacagtaacagaaagggagag 26271090  T
Q  201 gtgaaacagtctctgaaaattttgattggttcagttggatctaagagtaacaaggtggaatatgttaaaagtattgtaagtttcttgtcacaacattcaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26271091 gtgaaacagtctctgaaaattttgattggttcagttggatctaagagtaacaaggtggaatatgttaaaagtattgtaagtttcttgtcacaacattcaa 26271190  T
Q  301 atttgtcaaagtctgttttgtggactccagccacaacacatgttgcctcactttactcagctgatgatgt 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26271191 atttgtcaaagtctgttttgtggactccagccacaacacatgttgcctcactttactcagctgctgatgt 26271260  T

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Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 202 - 370
Target Start/End: Complemental strand, 3110682 - 3110514
Alignment:
Q  202 tgaaacagtctctgaaaattttgattggttcagttggatctaagagtaacaaggtggaatatgttaaaagtattgtaagtttcttgtcacaacattcaaa 301  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||    
T  3110682 tgaaacaatctctgaaaattctgattggttcagttggatctaagagtaacaaggtggaatatgttaaaagtattttaagatttttgtcacaacattcaaa 3110583  T
Q  302 tttgtcaaagtctgttttgtggactccagccacaacacatgttgcctcactttactcagctgatgatgt 370  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||    
T  3110582 tttgtcaaagtctgttttgtggactccatcgacaacacatgttgcctcactttactcagctgctgatgt 3110514  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 21496591 - 21496672
Alignment:
Q  15 ggattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttca 96  Q
    ||||||| |||||||||||| || |||||||||| ||||||||||||  ||| || ||| ||||||||||| ||||||||||    
T  21496591 ggattaacattttgcaattctaaggatcattttgaaatattgataatacgagtgactaggttgatacaatcctacaatttca 21496672  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 47892657 - 47892596
Alignment:
Q  42 cattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaagacca 103  Q
    ||||||||||||| ||||||||||| |||||||||| ||||||| ||||||||||| |||||    
T  47892657 cattttggaatatcgataatgtgagggattagattggtacaatcctacaatttcaaggacca 47892596  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 41246445 - 41246405
Alignment:
Q  54 ttgataatgtgagagattagattgatacaatcatacaattt 94  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  41246445 ttgataatgtgagggattagattgatacaatcatacaattt 41246405  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 7424293 - 7424216
Alignment:
Q  17 attaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaattt 94  Q
    ||||| ||||||||||| ||  |||||||||| ||||||| |||||| ||||| ||| |||||||| || ||||||||    
T  7424293 attaacattttgcaatttcagggatcattttgaaatattgttaatgtcagagactaggttgatacagtcctacaattt 7424216  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 54069315 - 54069229
Alignment:
Q  16 gattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaagacca 103  Q
    |||||||||||||||||| ||| ||  ||||||||||||| ||||||| || |||||| |||| ||||   ||||||||||| |||||    
T  54069315 gattaatattttgcaatttcaaggaaaattttggaatattcataatgt-agggattaggttgagacaactgtacaatttcaaggacca 54069229  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 9076532 - 9076590
Alignment:
Q  39 gatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaa 97  Q
    |||||||||| |||||||||||||||||||| ||  || |||||| | |||||||||||    
T  9076532 gatcattttgaaatattgataatgtgagagactaagttaatacaaccttacaatttcaa 9076590  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 24531894 - 24531850
Alignment:
Q  20 aatattttgcaattccaatgatcattttggaatattgataatgtg 64  Q
    ||||| |||||||||  ||||||||||| ||||||||||||||||    
T  24531894 aatatattgcaattcttatgatcattttagaatattgataatgtg 24531850  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 42281997 - 42281934
Alignment:
Q  40 atcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaagacca 103  Q
    ||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||| |||||    
T  42281997 atcattttgaaatattgataatgtgagagactagattgacacaattatacaatttcaaggacca 42281934  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 30777851 - 30777809
Alignment:
Q  23 attttgcaattccaatgatcattttggaatattgataatgtga 65  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||    
T  30777851 attttgcaatttcaatgttcattttgcaatattgataatgtga 30777809  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 5361180 - 5361124
Alignment:
Q  38 tgatcattttggaatattgataatgtgagagattagattgatacaatcatacaattt 94  Q
    ||||||||||| ||||| |||||| |||| || | ||||||||||||| ||||||||    
T  5361180 tgatcattttgaaatatcgataatatgagggactggattgatacaatcttacaattt 5361124  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 5854647 - 5854711
Alignment:
Q  39 gatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaagacca 103  Q
    ||||||||| ||||||||||||||| || || ||| ||| ||||||| ||||| ||||| |||||    
T  5854647 gatcattttagaatattgataatgtaagggactaggttgttacaatcctacaacttcaaggacca 5854711  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 350
Target Start/End: Original strand, 44063405 - 44063530
Alignment:
Q  225 attggttcagttggatctaagagtaacaaggtggaatatgttaaaagtattgtaagtttcttgtcacaacattcaaatttgtcaaagtctgttttgtgga 324  Q
    ||||| || |||||||| || |||||||||||||| |||||||||||  |  ||||||||||   ||| ||| ||||    || || || ||||||||||    
T  44063405 attggctctgttggatccaaaagtaacaaggtggattatgttaaaagcctcctaagtttcttagaacagcatccaaacacttcgaaatcagttttgtgga 44063504  T
Q  325 ctccagccacaacacatgttgcctca 350  Q
    |||||||||||||||| |||||||||    
T  44063505 ctccagccacaacacaggttgcctca 44063530  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 35225008 - 35225085
Alignment:
Q  16 gattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatt 93  Q
    ||||||||| |||||||||||  || |||||||||||||| ||||||||   || ||| ||||||||||  |||||||    
T  35225008 gattaatatcttgcaattccagagaccattttggaatatttataatgtgtaggactaggttgatacaatgctacaatt 35225085  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 49895909 - 49895973
Alignment:
Q  39 gatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaagacca 103  Q
    ||||||||||||||||||||||| || | ||||||  |||||||||| ||||||||||| |||||    
T  49895909 gatcattttggaatattgataatatgggggattagggtgatacaatcttacaatttcaaggacca 49895973  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 2373846 - 2373788
Alignment:
Q  39 gatcattttggaatattgataatgt-gagagattagattgatacaatcatacaatttcaa 97  Q
    ||||||||||||||||||||||||| |||| | || |||||||||||| |||||||||||    
T  2373846 gatcattttggaatattgataatgtggaga-actaaattgatacaatcttacaatttcaa 2373788  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 21873712 - 21873752
Alignment:
Q  57 ataatgtgagagattagattgatacaatcatacaatttcaa 97  Q
    ||||||||||||| ||||||||||||| | |||||||||||    
T  21873712 ataatgtgagagactagattgatacaaacctacaatttcaa 21873752  T

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Target: scaffold0110 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 33173 - 33231
Alignment:
Q  39 gatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaa 97  Q
    |||||||||||||||| |||||||||| ||| |||||| ||||| || |||||||||||    
T  33173 gatcattttggaatatcgataatgtgaaagactagatttatacagtcctacaatttcaa 33231  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 24993819 - 24993896
Alignment:
Q  23 attttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaaga 100  Q
    |||||| |||| ||| |||||||||||||||| ||||| ||| |||| ||| |||||| ||||  |||||||||||||    
T  24993819 attttgaaatttcaaagatcattttggaatatcgataaagtgggagactaggttgatataatcgaacaatttcaaaga 24993896  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 24917786 - 24917746
Alignment:
Q  21 atattttgcaattccaatgatcattttggaatattgataat 61  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  24917786 atattttgcaattccagggatcattttggaatattgataat 24917746  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 24993696 - 24993656
Alignment:
Q  21 atattttgcaattccaatgatcattttggaatattgataat 61  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  24993696 atattttgcaattccagggatcattttggaatattgataat 24993656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 14731920 - 14731860
Alignment:
Q  43 attttggaatattgataatgtgagagattagattgatacaatcatacaatttcaaagacca 103  Q
    |||||||||||| |||||||| || || || ||||| |||||| |||||||||||| ||||    
T  14731920 attttggaatatcgataatgtaagggactaaattgacacaatcttacaatttcaaaaacca 14731860  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 4117685 - 4117738
Alignment:
Q  16 gattaatattttgcaattccaatgatcattttggaatattgataatgtgagaga 69  Q
    |||||| ||||| ||||||||| ||| ||||| |||||||||||||||||||||    
T  4117685 gattaacattttccaattccaaggataattttcgaatattgataatgtgagaga 4117738  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 24143718 - 24143792
Alignment:
Q  23 attttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaa 97  Q
    ||||||||||| ||| ||||| |||  |||||||| ||||||| | | ||||||||||||||  |||||||||||    
T  24143718 attttgcaatttcaaagatcaatttataatattgaaaatgtgatatactagattgatacaattctacaatttcaa 24143792  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 12241428 - 12241347
Alignment:
Q  16 gattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatttcaa 97  Q
    |||||| ||||||||||| |||  ||||||||  ||||| ||||||||||| || || |||||||||  | |||||||||||    
T  12241428 gattaaaattttgcaatttcaagaatcattttaaaatatcgataatgtgagggactacattgatacagccctacaatttcaa 12241347  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 7145581 - 7145659
Alignment:
Q  16 gattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaattt 94  Q
    |||||||||||| |||||  |  ||||||||||||||||||||||| | ||||||||  |||| ||| || ||||||||    
T  7145581 gattaatattttacaattatagggatcattttggaatattgataatctaagagattaagttgacacagtcctacaattt 7145659  T

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