View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20721_high_33 (Length: 338)
Name: NF20721_high_33
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_high_33 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 29488740 - 29488426
Alignment:
| Q |
19 |
tattaatgtttatagttttaaaatatttgatgtggttttagaaaacaaagttaaagttgtaacatatggcatggtattggttgtaacttttggccaagtg |
118 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29488740 |
tattaatgattatagtttttaaatatttgatgtggttttagaaaacaaagttaaagttgtaacatatggcatggtattggttgtaacttttggccaagtg |
29488641 |
T |
|
| Q |
119 |
taagtcctcaatcgacaaaagtgattcaaatgttttatatttactttttgtaatttttatagttaaagttgaggtttgattgtaaatgaagttctcattg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29488640 |
taagtcctcaatcgacaaaagtgattcaagtgttttatatttactttttgtaatttttgtagttaaagttgaggtttgattgtaaatgaagttgtcattg |
29488541 |
T |
|
| Q |
219 |
gaataatcattcctataaatttgacaaaactagagtttatccaaatatgaaccaaaatgaatgtttggcttgatttatgctactctctccctcaacaact |
318 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||| |
|
|
| T |
29488540 |
gaataatcattgctataaatttgacaaaactagagtttatccaaatatgaaccaaaatgaatgattggcttgctttatgctac--tctccctcaacaact |
29488443 |
T |
|
| Q |
319 |
tgcacaggatgtttata |
335 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
29488442 |
tgcacaggatgattata |
29488426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University