View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20721_high_39 (Length: 313)

Name: NF20721_high_39
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20721_high_39
NF20721_high_39
[»] chr1 (5 HSPs)
chr1 (76-313)||(52548978-52549216)
chr1 (203-268)||(34465174-34465239)
chr1 (211-268)||(4677466-4677523)
chr1 (149-194)||(4678136-4678181)
chr1 (118-194)||(15595550-15595627)
[»] chr2 (19 HSPs)
chr2 (103-194)||(7542725-7542816)
chr2 (114-194)||(11999904-11999984)
chr2 (204-278)||(12235910-12235984)
chr2 (109-194)||(12235194-12235279)
chr2 (201-282)||(12257826-12257907)
chr2 (109-194)||(12258159-12258244)
chr2 (18-101)||(7542186-7542264)
chr2 (111-194)||(16657095-16657178)
chr2 (203-268)||(12244329-12244394)
chr2 (109-194)||(12244984-12245069)
chr2 (118-194)||(43625924-43626000)
chr2 (22-68)||(12245564-12245610)
chr2 (203-269)||(14705574-14705640)
chr2 (114-194)||(14703918-14703998)
chr2 (103-194)||(16661570-16661661)
chr2 (207-282)||(7543392-7543467)
chr2 (29-68)||(11999378-11999417)
chr2 (18-65)||(14703368-14703415)
chr2 (20-68)||(12258739-12258787)
[»] chr4 (4 HSPs)
chr4 (109-194)||(35132951-35133036)
chr4 (120-194)||(9335469-9335543)
chr4 (120-194)||(30775768-30775842)
chr4 (20-68)||(54396385-54396433)
[»] chr7 (17 HSPs)
chr7 (120-194)||(13333034-13333108)
chr7 (118-194)||(6790026-6790102)
chr7 (120-190)||(8585288-8585358)
chr7 (120-190)||(8629048-8629118)
chr7 (120-194)||(8667935-8668009)
chr7 (120-194)||(10493952-10494026)
chr7 (118-190)||(3147786-3147858)
chr7 (120-185)||(8671217-8671282)
chr7 (103-194)||(8654949-8655040)
chr7 (109-194)||(1301969-1302054)
chr7 (211-271)||(1302430-1302490)
chr7 (211-275)||(7876753-7876817)
chr7 (211-275)||(8647820-8647884)
chr7 (118-194)||(17268453-17268529)
chr7 (211-277)||(8655468-8655534)
chr7 (203-232)||(8610775-8610804)
chr7 (118-194)||(17260755-17260831)
[»] chr5 (2 HSPs)
chr5 (118-194)||(28220465-28220541)
chr5 (210-275)||(28221065-28221130)
[»] chr8 (1 HSPs)
chr8 (141-194)||(43745384-43745437)
[»] chr6 (1 HSPs)
chr6 (149-194)||(28911127-28911172)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 76 - 313
Target Start/End: Complemental strand, 52549216 - 52548978
Alignment:
Q  76 cttttgaattcgcactaatgtccactccattatcaccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttctt 175  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549216 cttttgaattcccactaatgtccactccattatcaccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttctt 52549117  T
Q  176 accaattaacctcttagcacg-accgtattgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcctacagcaagtccttcgtattt 274  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  52549116 accaattaacctcttagcacgtaccgtattgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttcgtattt 52549017  T
Q  275 tctcttcaaaaaggaaaagaatcactcgagatagagggt 313  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  52549016 tctcttcaaaaaggaaaagaatcactcgagagagagggt 52548978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 34465239 - 34465174
Alignment:
Q  203 ttgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcctacagcaagtccttc 268  Q
    ||||||||||||||| ||||||||||| || || || | |||||||||||| |||||| |||||||    
T  34465239 ttgttcctgccatactgcaacacatgagtaggttgtgccaaggtctattcccacagcacgtccttc 34465174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 4677523 - 4677466
Alignment:
Q  211 gccatacagcaacacatgaatacgtagtacaaaggtctattcctacagcaagtccttc 268  Q
    |||| ||||||||||||||||| ||||| | ||| |||||||| |||||| |||||||    
T  4677523 gccacacagcaacacatgaataagtagttccaagatctattcccacagcacgtccttc 4677466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 4678181 - 4678136
Alignment:
Q  149 ttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    ||||||||||| ||||||| || || ||||||||||||||||||||    
T  4678181 ttgaacaacagaatcactatacctcctaccaattaacctcttagca 4678136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 15595550 - 15595627
Alignment:
Q  118 tgaccttgaatgaccataacaatatatcatcttgaacaa-caggatcactaaacttcttaccaattaacctcttagca 194  Q
    |||||||||||| ||| |||  |||||||| |||||||| ||| ||||||||||||| |||  ||||| |||||||||    
T  15595550 tgaccttgaatggccacaactttatatcattttgaacaaacagaatcactaaacttcctactgattaatctcttagca 15595627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 7542725 - 7542816
Alignment:
Q  103 cattatcaccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    |||| ||||| ||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7542725 cattgtcacccgcagtcaccttgaatggccataacagtatatcatcttgaacaacaggatcactaaacttcctaccaattaacctcttagca 7542816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 11999904 - 11999984
Alignment:
Q  114 gcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    |||||||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  11999904 gcagtgaccttgaatggccataacaatccatcatcttgaacaacaagatcactaaacttccaaccaattaacctcttagca 11999984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 12235910 - 12235984
Alignment:
Q  204 tgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcctacagcaagtccttcgtattttctc 278  Q
    |||||||||||||| |||||||||||||| || |||| ||||||||| || ||||||||||||||| ||||||||    
T  12235910 tgttcctgccatactgcaacacatgaatatgttgtaccaaggtctatccccacagcaagtccttcgcattttctc 12235984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 12235194 - 12235279
Alignment:
Q  109 caccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    |||| |||| ||||||||||| ||| ||||  | |||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  12235194 caccagcagcgaccttgaatggccacaacatcacatcatcttgaacaacttgatcactaaacttcctaccaattaacctcttagca 12235279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 282
Target Start/End: Complemental strand, 12257907 - 12257826
Alignment:
Q  201 tattgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcctacagcaagtccttcgtattttctcttca 282  Q
    |||||||||||||| |||||||| ||||||||||| || | |||||| |||||||  |||||||||||||||||||| ||||    
T  12257907 tattgttcctgccaaacagcaacgcatgaatacgttgtgccaaggtcaattcctatcgcaagtccttcgtattttcttttca 12257826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 12258244 - 12258159
Alignment:
Q  109 caccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    |||| |||||||| || |||| ||| |||| ||||||||||||||| ||  |||||||||||||| ||||||||||||||||||||    
T  12258244 caccagcagtgactttaaatggccacaacattatatcatcttgaactacttgatcactaaacttcctaccaattaacctcttagca 12258159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 7542186 - 7542264
Alignment:
Q  18 gaaagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaactcaaggcttttgaattcgcactaatgtccact 101  Q
    ||||||||||| |||||| ||||||||||||||||||||||| |||     ||||||||||||| |||| ||||||||||||||    
T  7542186 gaaagaaagtgatctttttgccctctcacaagcagttctcaacctc-----ctcaaggcttttggattcccactaatgtccact 7542264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 16657178 - 16657095
Alignment:
Q  111 ccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    |||||| |||||||||||| ||| || |  ||||||| ||||||||||||||||||||||||| |||| |||||||| ||||||    
T  16657178 ccggcaatgaccttgaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagca 16657095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 12244394 - 12244329
Alignment:
Q  203 ttgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcctacagcaagtccttc 268  Q
    ||||||||||||||| ||||||||||||||||| |||| |||||||||||| || ||| |||||||    
T  12244394 ttgttcctgccatactgcaacacatgaatacgttgtaccaaggtctattcccacggcacgtccttc 12244329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 12245069 - 12244984
Alignment:
Q  109 caccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    |||| |||||||||||||| | |||||| |||  ||||||  |||||| |||||||||||||||| |||||||||| |||||||||    
T  12245069 caccagcagtgaccttgaacggccataataatgcatcatccagaacaataggatcactaaacttcctaccaattaatctcttagca 12244984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 43625924 - 43626000
Alignment:
Q  118 tgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    ||||| |||||| ||| ||||  ||||||| ||||||||||| ||||||||||||| |||| |||||||||||||||    
T  43625924 tgaccctgaatggccacaacatgatatcattttgaacaacagaatcactaaacttcctaccgattaacctcttagca 43626000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 12245610 - 12245564
Alignment:
Q  22 gaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 68  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||    
T  12245610 gaaagtattctttttgccctctcacaagcagttctcaatctcctcaa 12245564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 269
Target Start/End: Original strand, 14705574 - 14705640
Alignment:
Q  203 ttgttcctgccatacagcaacacatgaatacgtagtacaaaggtctattcctacagcaagtccttcg 269  Q
    ||||||||||||||| ||||||||||| ||||| |||| |||||||||||| ||||||  |||||||    
T  14705574 ttgttcctgccatactgcaacacatgagtacgttgtaccaaggtctattcccacagcacatccttcg 14705640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 14703918 - 14703998
Alignment:
Q  114 gcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    ||||||||||| |||| |||||| | ||||||||||||||||| |||||| ||||||||| | || |  ||||||||||||    
T  14703918 gcagtgaccttaaatggccataaaagtatatcatcttgaacaataggatcgctaaacttccttcccaacaacctcttagca 14703998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 16661661 - 16661570
Alignment:
Q  103 cattatcaccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    ||||| |||| ||| | |||||||| | ||| |||| |||||| | ||||||||| || |||||||| ||| ||||||||||||||||||||    
T  16661661 cattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaacctcttagca 16661570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 282
Target Start/End: Original strand, 7543392 - 7543467
Alignment:
Q  207 tcctgccatacagcaacacatgaatacgtagtacaaaggtctattcctacagcaagtccttcgtattttctcttca 282  Q
    ||||||||||| |||||||| || ||||| || | ||||||||||||||  |||| ||  ||||||||||||||||    
T  7543392 tcctgccatactgcaacacaagagtacgttgtgccaaggtctattcctattgcaactctgtcgtattttctcttca 7543467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 11999378 - 11999417
Alignment:
Q  29 ttcttttggccctctcacaagcagttctcaatctcctcaa 68  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  11999378 ttctttttgccctctcacaagcagttctcaacctcctcaa 11999417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 14703368 - 14703415
Alignment:
Q  18 gaaagaaagtgttcttttggccctctcacaagcagttctcaatctcct 65  Q
    |||||||||||||||||| |||||||| ||||| |||||||| |||||    
T  14703368 gaaagaaagtgttctttttgccctctcgcaagcggttctcaagctcct 14703415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 12258787 - 12258739
Alignment:
Q  20 aagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 68  Q
    ||||||||| |||||| || ||||||||||| ||| |||||||||||||    
T  12258787 aagaaagtgatctttttgcactctcacaagctgttttcaatctcctcaa 12258739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 35132951 - 35133036
Alignment:
Q  109 caccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    ||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||    
T  35132951 caccggcagtgaccttgaatggccatagcagtatatcatcttgaacaataggatcactaaacttcctaccaattaaccttttagca 35133036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 9335543 - 9335469
Alignment:
Q  120 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    |||||||||| ||| |||||||||||   |||||||||  |||||||||||||| ||||| |||| |||||||||    
T  9335543 accttgaatggccacaacaatatatctctttgaacaaccagatcactaaacttcctaccagttaatctcttagca 9335469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 30775768 - 30775842
Alignment:
Q  120 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    |||||||||| ||| ||||| ||||| | |||||||||||| || ||||| ||| ||||||||||||| ||||||    
T  30775768 accttgaatggccacaacaaaatatctttttgaacaacagggtcgctaaatttcctaccaattaaccttttagca 30775842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 54396385 - 54396433
Alignment:
Q  20 aagaaagtgttcttttggccctctcacaagcagttctcaatctcctcaa 68  Q
    ||||||||||||| || || ||||||||||| ||||| |||||||||||    
T  54396385 aagaaagtgttctcttagctctctcacaagctgttcttaatctcctcaa 54396433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 13333108 - 13333034
Alignment:
Q  120 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    |||||||||| ||| |||| |||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||    
T  13333108 accttgaatggccacaacattatatcattttgaacaaccggatcactaaacttcctaccaattaacctcttagca 13333034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 6790026 - 6790102
Alignment:
Q  118 tgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    |||||||||||| ||| ||||  ||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||    
T  6790026 tgaccttgaatggccaaaacatcatatcattttgaacaacagaatcactaaacttcctaccaattaacctcttagca 6790102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 8585358 - 8585288
Alignment:
Q  120 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctctt 190  Q
    |||||||||| ||| |||| |||||||| ||||||||| ||||||||||||||| ||||||||||||||||    
T  8585358 accttgaatggccacaacattatatcattttgaacaacgggatcactaaacttcctaccaattaacctctt 8585288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 8629048 - 8629118
Alignment:
Q  120 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctctt 190  Q
    |||||||||| ||| ||||  ||||| | ||||||||||||||||||||||||| ||||||||||||||||    
T  8629048 accttgaatggccagaacatgatatccttttgaacaacaggatcactaaacttcctaccaattaacctctt 8629118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 8667935 - 8668009
Alignment:
Q  120 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    |||||||||| ||| |||||||||||   ||||||||| || |||||||||||| ||||||||||||||||||||    
T  8667935 accttgaatggccacaacaatatatctctttgaacaacggggtcactaaacttcctaccaattaacctcttagca 8668009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 10494026 - 10493952
Alignment:
Q  120 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    |||||||||| ||| |||| |||||| | ||||||||| ||||||||||||||| | ||||||||||||||||||    
T  10494026 accttgaatggccacaacattatatcgttttgaacaaccggatcactaaacttcctgccaattaacctcttagca 10493952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 3147786 - 3147858
Alignment:
Q  118 tgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctctt 190  Q
    |||||||||||| ||| ||||  ||||||| ||||||||||| ||||| ||||||| ||||||||||||||||    
T  3147786 tgaccttgaatggccacaacatcatatcattttgaacaacagaatcaccaaacttcctaccaattaacctctt 3147858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 8671282 - 8671217
Alignment:
Q  120 accttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaac 185  Q
    |||||||||| ||| |||||||||||   ||||||||| ||||||||||||||| |||||||||||    
T  8671282 accttgaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaattaac 8671217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 8654949 - 8655040
Alignment:
Q  103 cattatcaccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    ||||| |||| | ||| ||| |||||| ||| ||||  ||||| | |||||||| |||||||||| ||||| ||||||||||||||||||||    
T  8654949 cattaacaccagaagtaaccatgaatggccacaacatgatatccttttgaacaataggatcactatacttcctaccaattaacctcttagca 8655040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 1301969 - 1302054
Alignment:
Q  109 caccggcagtgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    |||||||  |||||||||||| ||| ||||  || || | ||||||||| | ||||||||||||| |||||||||| |||||||||    
T  1301969 caccggcgatgaccttgaatggccacaacatcatgtctttttgaacaactgaatcactaaacttcctaccaattaatctcttagca 1302054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 1302430 - 1302490
Alignment:
Q  211 gccatacagcaacacatgaatacgtagtacaaaggtctattcctacagcaagtccttcgta 271  Q
    |||| ||||||||||| ||||| ||||| | |||||||||||| |||||| ||||||||||    
T  1302430 gccacacagcaacacacgaataagtagttccaaggtctattccaacagcacgtccttcgta 1302490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 7876817 - 7876753
Alignment:
Q  211 gccatacagcaacacatgaatacgtagtacaaaggtctattcctacagcaagtccttcgtatttt 275  Q
    |||| ||||||||||| |||||||| || | |||||||||||| || ||| ||||||||||||||    
T  7876817 gccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtccttcgtatttt 7876753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 8647820 - 8647884
Alignment:
Q  211 gccatacagcaacacatgaatacgtagtacaaaggtctattcctacagcaagtccttcgtatttt 275  Q
    |||| ||||||||||| |||||||| || | |||||||||||| || ||||||||||||| ||||    
T  8647820 gccacacagcaacacacgaatacgttgttccaaggtctattcccactgcaagtccttcgtgtttt 8647884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 17268453 - 17268529
Alignment:
Q  118 tgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    |||||||||||| |||  ||| |||||| | ||| || |||||||||||||||||| |||||||||  |||||||||    
T  17268453 tgaccttgaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagca 17268529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 277
Target Start/End: Original strand, 8655468 - 8655534
Alignment:
Q  211 gccatacagcaacacatgaatacgtagtacaaaggtctattcctacagcaagtccttcgtattttct 277  Q
    |||| ||||||||||||||||| || || |  ||||||||||| |||||| |||| |||||||||||    
T  8655468 gccacacagcaacacatgaataggttgttccgaggtctattccgacagcacgtccctcgtattttct 8655534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 232
Target Start/End: Original strand, 8610775 - 8610804
Alignment:
Q  203 ttgttcctgccatacagcaacacatgaata 232  Q
    ||||||||||||||||||||||||||||||    
T  8610775 ttgttcctgccatacagcaacacatgaata 8610804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 17260755 - 17260831
Alignment:
Q  118 tgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    |||||||||||| |||  ||| |||||| | ||| || |||||||||||||||||| |||||| ||  |||||||||    
T  17260755 tgaccttgaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaactagtctcttagca 17260831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 28220465 - 28220541
Alignment:
Q  118 tgaccttgaatgaccataacaatatatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    |||||||||||| ||| |||  ||||||||||||||||||||  |||||||||||| ||||||||||||||||||||    
T  28220465 tgaccttgaatggccacaactttatatcatcttgaacaacagagtcactaaacttcctaccaattaacctcttagca 28220541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 28221065 - 28221130
Alignment:
Q  210 tgccatacagcaacacatgaatacgtagtacaaaggtctattcctacagcaagtccttcgtatttt 275  Q
    ||||| |||||||||||||||||||| || | ||| |||||||| ||||||  ||||| |||||||    
T  28221065 tgccacacagcaacacatgaatacgttgttccaagatctattcccacagcacatccttggtatttt 28221130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 43745384 - 43745437
Alignment:
Q  141 atatcatcttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    ||||||| ||||||| ||| |||| |||||||| ||||||||||||||||||||    
T  43745384 atatcattttgaacatcagaatcattaaacttcctaccaattaacctcttagca 43745437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 28911127 - 28911172
Alignment:
Q  149 ttgaacaacaggatcactaaacttcttaccaattaacctcttagca 194  Q
    ||||||||| ||||||||||||||| || |||||| ||||||||||    
T  28911127 ttgaacaacgggatcactaaacttcctatcaattatcctcttagca 28911172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University