View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20721_high_42 (Length: 285)
Name: NF20721_high_42
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_high_42 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 285
Target Start/End: Original strand, 10606735 - 10607013
Alignment:
| Q |
7 |
tacaaggattgcaatgacaattggtcgtagttcaattgaaatgaagctattaagctcatgataatctgaagattcatttggtgacttaaattataaacta |
106 |
Q |
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| T |
10606735 |
tacaaggattgcaatgacaattggtcatagttcaattgaaatgaagctattaagctcatgataatctgaagattcatttggtgactcaaattataaacta |
10606834 |
T |
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| Q |
107 |
tggtctgctggagtagttgtagggtttgcttaacttcttcagctgccttgtttagtttattccaatttatatccaggtccttttaactctggcactgatg |
206 |
Q |
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| T |
10606835 |
tggtctgctggagtagttgtagggtttgcttaacttcttcagctgccttgtttagtttattccaattaatatccaggtccttttaactctggcactgatg |
10606934 |
T |
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| Q |
207 |
agatttttgacggaaatgttgttgaagacttgtttaccacaaaaagtataataattctgttatccttgttcacaagcct |
285 |
Q |
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| T |
10606935 |
agatttttggtggaaatgtcgttgaagacttgtttaccacaaaaagtataataattatgttatccttgttcacaagcct |
10607013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 9806902 - 9806804
Alignment:
| Q |
5 |
catacaaggattgcaatgacaattggtcgtagttcaattgaaatgaagctattaagctcatgataatctgaagattcatttggtgacttaaattataaa |
103 |
Q |
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| T |
9806902 |
cataaaaggattgcaaagacaattggtcatagttcagttgaaatgaagctgttaaccttatgattatctcaagattcatttgttgtctcaaattataaa |
9806804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 3642437 - 3642318
Alignment:
| Q |
5 |
catacaaggattgcaatgacaattggtcgtagttcaattgaaatgaagctattaagctcatgataatctgaagattcatttggtgacttaaattataaac |
104 |
Q |
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| T |
3642437 |
cataaaaggattgcaaagacaattggtcatggttcagttgaaatgaagctgctaactttatgatcgtctcaagattcatttgttgtctcaaattttaaag |
3642338 |
T |
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| Q |
105 |
tatggtctgctggagtagtt |
124 |
Q |
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| T |
3642337 |
tattgactgccggagaagtt |
3642318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 3642266 - 3642194
Alignment:
| Q |
144 |
ttcagctgccttgtttagtttattccaatttatatccaggtccttttaactctggcactgatgagatttttga |
216 |
Q |
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| T |
3642266 |
ttcagctgccttggttagtttattcgcatcaatatcctggtcatgttaactttggcactgatgatattcttga |
3642194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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