View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20721_high_47 (Length: 263)
Name: NF20721_high_47
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_high_47 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 29424717 - 29424478
Alignment:
| Q |
11 |
caaagggtgatgaactatgcagatagctaagtaaaaagataagaaaatagctatttgtattttcaaggttggcaagatgcaaaacgttcataaatttatt |
110 |
Q |
| |
|
||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29424717 |
caaagagtgatggactatgtagatagctaagtaaaaagataagaaaatagctatttgtattttcaaggttggcaagatgcaaaacgttcataaatttatt |
29424618 |
T |
|
| Q |
111 |
ggtttagaaagtgagacttggagaatagtgtgtctaatagatgacttttcattggtaagaaaggaacatttggaaggtaaaacactcttcctaacgccga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29424617 |
ggtttagaaagtgagacttggagaatagtgtgtctaatagatgacttttcattggtaagaaaggaacatttggaaggtaaaacactcttcctaacgccga |
29424518 |
T |
|
| Q |
211 |
gtctcat--ttttaactttggtttttgatgtgggaagaatg |
249 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||| |||| |
|
|
| T |
29424517 |
gtctcattcttttaacttt-gtttttgatgtgggaataatg |
29424478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University