View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20721_high_49 (Length: 255)
Name: NF20721_high_49
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_high_49 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 67 - 223
Target Start/End: Original strand, 33049006 - 33049162
Alignment:
| Q |
67 |
gatagagaaaaattaaagctaatagaatgcgttttctatttttacaaaagttcaaacaacacttacacaacaaataaaagagtgatatattcttttccaa |
166 |
Q |
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| T |
33049006 |
gatagagaaaaattaaagctaatagaatgcgttttttagttttacaaaagctcaaacaacacttacacaacaaataaaagagtgatatattcttttccaa |
33049105 |
T |
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| Q |
167 |
ctaatgagatatttataaatttataaaatttaatgcttttaaaagcatcattgtata |
223 |
Q |
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| T |
33049106 |
ctaatgagatatttataaatttataaaatttaatgcttttaaaagcatcattgtata |
33049162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33048926 - 33048970
Alignment:
| Q |
1 |
aaaacgagattataagtatgctgacttatgaaagagttttgatat |
45 |
Q |
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| T |
33048926 |
aaaacgagattataagtatgctgacttatgaaagagtttcgatat |
33048970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 33049192 - 33049221
Alignment:
| Q |
207 |
aaaagcatcattgtataaacttttattgtt |
236 |
Q |
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| T |
33049192 |
aaaagcatcattgtataaacttttattgtt |
33049221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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