View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20721_high_58 (Length: 228)
Name: NF20721_high_58
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_high_58 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 29059561 - 29059754
Alignment:
| Q |
17 |
aatattaagtacctgcaataattaagtgtattggaatcatggtttacggtattgaaatcaacaggattacaactatttagtgtattgaaatcacatgata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29059561 |
aatattaagtacctgcaataattaagtgtattggaatcatggtttacggtattgaaatcaacaggattacaactatttagtgtattgaaatcacatgata |
29059660 |
T |
|
| Q |
117 |
gtattcatgcttccttctccatttgaagtttaatattcttcttttatctctatcacacaaaaatggcaggacaccaagctttgtttgatggacc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
29059661 |
gtattcatgcttccttctccatttgaagtttaatattcttcttttatctctatcacacaaaaatggcaggacaccaacctttgtttgatggacc |
29059754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 20318856 - 20318950
Alignment:
| Q |
17 |
aatattaagtacctgcaataattaagtgtattggaatcatggtttacggtattgaaatcaacaggattacaactatttagtgtattgaaatcaca |
111 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20318856 |
aatattaagtacctgcaataattaagtgtattggaatcatggtttacggtattgaaatcaacaggattacaactatttagtgtattgaaatcaca |
20318950 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 21129914 - 21129724
Alignment:
| Q |
17 |
aatattaagtacctgcaataattaagtgtattggaatcatggtttacggtattgaaatcaacaggattacaactatttagtgtattgaaatcacatgata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21129914 |
aatattaagtacctgcaataattaagtgtattggaatcatggtttacggtattgaaatcaacaggattacaactatttagtgtattgaaatcacatgata |
21129815 |
T |
|
| Q |
117 |
gtattcatgcttccttctccatttgaagtttaatattcttcttttatctctatcacacaaaaatggcaggacaccaagctttgtttgatgg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
21129814 |
gtattcatgcttccttctccatttgaagtttaatattcttcttttatctctatcacacaaaaatggcaggacaccaacctttgtttgatgg |
21129724 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 18647194 - 18647055
Alignment:
| Q |
17 |
aatattaagtacctgcaataattaagtgtattggaatcatggtttacggtattgaaatcaacaggattacaactatttagtgtattgaaatcacatgata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
18647194 |
aatattaagtacctgcaataattaagtgtattggaatcatggtttacggtattgaaatcaactggattacaactatttagtgtattgaaatcacatgata |
18647095 |
T |
|
| Q |
117 |
gtattcatgcttccttctccatttgaagtttaatattctt |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18647094 |
atattcatgcttccttctccatttgaagtttaatattctt |
18647055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 5082017 - 5082210
Alignment:
| Q |
17 |
aatattaagtacctgcaataattaagtgtattggaatcatggtttacggtattgaaatcaacaggattacaactatttagtgtattgaaatcacatgata |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5082017 |
aatattaagtacctgcaatagttaagtgtattggaatcatggtttacggtattgaaatcaacaggattacaactatttagtgtattgaaatcacatgata |
5082116 |
T |
|
| Q |
117 |
gtattcatgcttccttctccatttgaagtttaatattcttcttttatctctatcacacaaaaatggcaggacaccaagctttgtttgatggacc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5082117 |
gtattcatgcttccttctccatttgaagtttaatattcttcttttatctctatcacacaaaaatggcaggacaccaacctttgtttgatggacc |
5082210 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 55408095 - 55407902
Alignment:
| Q |
17 |
aatattaagtacctgcaataattaagtgtattggaatcatggtttacggtattgaaatcaacaggattacaactatttagtgtattgaaatcacatgata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55408095 |
aatattaagtacctgcaataattaagtgtattggaatcatgatttacggtattgaaatcaacaggattacaactatttagtgtattgaaatcacatgata |
55407996 |
T |
|
| Q |
117 |
gtattcatgcttccttctccatttgaagtttaatattcttcttttatctctatcacacaaaaatggcaggacaccaagctttgtttgatggacc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
55407995 |
gtattcatgcttccttctccatttgaagtttaatattcttcttttatctctatcacacaaaaatggcaggacaccaacctttgtttgatggacc |
55407902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 55410603 - 55410410
Alignment:
| Q |
17 |
aatattaagtacctgcaataattaagtgtattggaatcatggtttacggtattgaaatcaacaggattacaactatttagtgtattgaaatcacatgata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55410603 |
aatattaagtacctgcaataattaagtgtattgaaatcatggtttacggtattgaaatcaacaggattacaactatttagtgtattgaaatcacatgata |
55410504 |
T |
|
| Q |
117 |
gtattcatgcttccttctccatttgaagtttaatattcttcttttatctctatcacacaaaaatggcaggacaccaagctttgtttgatggacc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
55410503 |
gtattcatgcttccttctccatttgaagtttaatattcttcttttatctctatcacacaaaaatggcaggacaccaacctttgtttgatggacc |
55410410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 30785154 - 30784961
Alignment:
| Q |
17 |
aatattaagtacctgcaataattaagtgtattggaatcatggtttacggtattgaaatcaacaggattacaactatttagtgtattgaaatcacatgata |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30785154 |
aatattaagtacctgcaatagttaagtgtattggaatcatggtttacagtattgaaatcaacaggattacaactatttagtgtattgaaatcacatgata |
30785055 |
T |
|
| Q |
117 |
gtattcatgcttccttctccatttgaagtttaatattcttcttttatctctatcacacaaaaatggcaggacaccaagctttgtttgatggacc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30785054 |
gtattcatgcttccttctccatttgaagtttaatattcttcttttatctctatcacacaaaaatggcaggacaccaacctttgtttgatggacc |
30784961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 41759445 - 41759252
Alignment:
| Q |
17 |
aatattaagtacctgcaataattaagtgtattggaatcatggtttacggtattgaaatcaacaggattacaactatttagtgtattgaaatcacatgata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41759445 |
aatattaagtacctgcaataattaagtgtattggaatcatgatttacggtattgaaatcaacaggattacaactatttagtgtattgaaatcacatgata |
41759346 |
T |
|
| Q |
117 |
gtattcatgcttccttctccatttgaagtttaatattcttcttttatctctatcacacaaaaatggcaggacaccaagctttgtttgatggacc |
210 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
41759345 |
gtattcatacttcattctccatttgaagtttaatattcttcttttatctctatcacacaaaaatggcaggacaacaacctttgtttgatggacc |
41759252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 8023971 - 8023832
Alignment:
| Q |
17 |
aatattaagtacctgcaataattaagtgtattggaatcatggtttacggtattgaaatcaacaggattacaactatttagtgtattgaaatcacatgata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8023971 |
aatattaagtacctgcaataattaagtgtattggaatcatggtttacggtattgaaatcaacaggattacaactatttagtgtattgaaatcacatgata |
8023872 |
T |
|
| Q |
117 |
gtattcatgcttccttctccatttgaagtttaatattctt |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8023871 |
atattcatgcttccttctccatttgaagtttaatattctt |
8023832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 44470317 - 44470124
Alignment:
| Q |
17 |
aatattaagtacctgcaataattaagtgtattggaatcatggtttacggtattgaaatcaacaggattacaactatttagtgtattgaaatcacatgata |
116 |
Q |
| |
|
|||||||||||| || |||| |||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44470317 |
aatattaagtacttgtaatatttaagtgtattgtaatcatgttttactgtattgaaatcaacaggattacaactatttagtgtattgaaatcacatgata |
44470218 |
T |
|
| Q |
117 |
gtattcatgcttccttctccatttgaagtttaatattcttcttttatctctatcacacaaaaatggcaggacaccaagctttgtttgatggacc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44470217 |
gtattcatgcttccttctccatttgaagtttaatattcttcttttatctctatcacacaaaaatggcaggacaccaacctttgtttgatggacc |
44470124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 24521364 - 24521456
Alignment:
| Q |
17 |
aatattaagtacctgcaataattaagtgtattggaatcatggtttacggtattgaaatcaacaggattacaactatttagtgtattgaaatca |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24521364 |
aatattaagtacctgcaataattaagtgtattggaatcatggtttacggtattgaaatcaacaggattacaactatttagtgtattgaaatca |
24521456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 24528304 - 24528396
Alignment:
| Q |
17 |
aatattaagtacctgcaataattaagtgtattggaatcatggtttacggtattgaaatcaacaggattacaactatttagtgtattgaaatca |
109 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24528304 |
aatattaagtacctgtaataattaagtgtattggaatcatggtttacggtattgaaatcaacaggattacaactatttagtgtattaaaatca |
24528396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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