View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20721_high_62 (Length: 210)

Name: NF20721_high_62
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20721_high_62
NF20721_high_62
[»] chr7 (1 HSPs)
chr7 (4-185)||(45830126-45830307)
[»] chr3 (1 HSPs)
chr3 (89-185)||(42557882-42557978)


Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 45830307 - 45830126
Alignment:
Q  4 gagcacagatatagtttatagtcattggttgactctaagcctctagtcattggttgcatagatatagtttatccaaggaaaaatgtaattcaaaattcag 103  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||    
T  45830307 gagcacatatatagtttatagtcattggttgacactaagcctctagtcattggttgcatatatatagtttatctgaggaaaaatgtaattcaaaattcag 45830208  T
Q  104 agtcttttcttgtatgatttattgttgattatattcattcaagtgaaatattttaccagaaattctttatagtcaagaacac 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45830207 agtcttttcttgtatgatttattgttgattatattcattcaagtgaaatattttaccataaattctttatagtcaagaacac 45830126  T

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Target: chr3 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 42557882 - 42557978
Alignment:
Q  89 taattcaaaattcagagtcttttcttgtatgatttattgttgattatattcattcaagtgaaatattttaccagaaattctttatagtcaagaacac 185  Q
    |||||||||||||||||||||||||||||| ||  ||||||| ||||||   ||||||||||||| |||||||||||||||||||||||||||||||    
T  42557882 taattcaaaattcagagtcttttcttgtattatagattgttgtttatataatttcaagtgaaatactttaccagaaattctttatagtcaagaacac 42557978  T

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