View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20721_low_10 (Length: 520)
Name: NF20721_low_10
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 156 - 510
Target Start/End: Complemental strand, 8168194 - 8167840
Alignment:
| Q |
156 |
aaatgtgaaactaaaaacaatccttcccaaaaaagagagttgctagagaatggaagagagttgttccaacaatttatttattgatattaacttactcatt |
255 |
Q |
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| T |
8168194 |
aaatgtgaaactaaaaacaatccttcacaaaaaagagagttgctagagaatggaagagagttgttccaacaatttatttattgatattaacttactcatt |
8168095 |
T |
|
| Q |
256 |
tcagcattacataattggtatcaccaattatctcaatacatatgaaagcaagtaatatactaaggtgacattggaaattcgaaaaacaacatgggaaaat |
355 |
Q |
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| T |
8168094 |
tcagcattacataattggtatcaccaattatctcaatacatatgaaagcaagtaatatactaaggtgacattggaaattcgacaaacaacaatggaaaat |
8167995 |
T |
|
| Q |
356 |
cttagacatgccaaatgaacatcaaatttagtgttttcccttgagaagaaacttttgcagccaaaaagcagagtacttgggatatcttttcaaattgtta |
455 |
Q |
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| T |
8167994 |
cttagacatgccaaatgaacatcaaatttagtgttttcccttgagaaggaacttttgcagccaaaaagcagagtacttgggatatctcttcaaattgtta |
8167895 |
T |
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| Q |
456 |
acgaaatcgacataaattattccaaatcgtactgtgtaccctgcatcccattcat |
510 |
Q |
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| T |
8167894 |
acgaaatcgacataaattattccaaatcgtactgtgtaccctgcatcccattcat |
8167840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 193 - 510
Target Start/End: Complemental strand, 8143348 - 8143018
Alignment:
| Q |
193 |
agttgctagagaatggaagagagttgttccaacaatttattt-attgatattaacttactcatttcagcat------------tacataattggtatcac |
279 |
Q |
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| T |
8143348 |
agttgctagagaatgaaagatagttgttccaacaatttatttcatttatattgactcactcatttcagcatgcccttaaggtttatttaattggtatcac |
8143249 |
T |
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| Q |
280 |
caattatctcaatacatatgaaagcaagtaatatactaaggtgacattggaaattcgaaaaacaacatgggaaaatcttagacatgccaaatgaacatca |
379 |
Q |
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| T |
8143248 |
caattatctcaatacatatgagcgcaagtaacatactaaggtgacactggaaattcgacaaacaacaatggaaaatcttagacatgccaaatgaacatca |
8143149 |
T |
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| Q |
380 |
aatttagtgttttcccttgagaagaaacttttgcagccaaaaagcagagtacttgggatatcttttcaaattgttaacgaaatcgacataaattattcca |
479 |
Q |
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| T |
8143148 |
aatttagtgttttcccttgagaaggaacttttgcagccaaaaagcagagtacttgggatatctcttcaatttgttaacgaaatccacataaattattcca |
8143049 |
T |
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| Q |
480 |
aatcgtactgtgtaccctgcatcccattcat |
510 |
Q |
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| T |
8143048 |
aatcgtactgtgtaccctgcatcccattcat |
8143018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 8168358 - 8168220
Alignment:
| Q |
20 |
ccaaagacattatgacagcgaggtgcagaatcaggaaccaaaatgatcattcactcaataaaagtaggagagatctaaaattcaatgaatagcaattaaa |
119 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8168358 |
ccaaagacgttatgacagcgaggtgcagaatcaggaaccaaaatgatcattcacccaataaaagtaggaaagatctaaaattcaatgaatagcaattaaa |
8168259 |
T |
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| Q |
120 |
ataataagttcataaacaacggaaactcatgtaacgaaa |
158 |
Q |
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| T |
8168258 |
ataataagttcataaacagcggaaactcatgtaacgaaa |
8168220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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