View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20721_low_11 (Length: 497)
Name: NF20721_low_11
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_low_11 |
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| [»] scaffold0771 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 10 - 479
Target Start/End: Complemental strand, 1886811 - 1886347
Alignment:
| Q |
10 |
ataatactgatgaggagagataaaggaagaggaagagaacatgtatagttggtagtatgactcgtataaagacacataagagggacaaggggcagagaca |
109 |
Q |
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| T |
1886811 |
ataatactgatgaggagagataaaggaagaggaagagaacatgtatagatggtagtatgactcgtatatagacacataagagggacaagggacagaaaca |
1886712 |
T |
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| Q |
110 |
aagttgagctagcggagtgttgcaaagctccctcaacccctgcccttgcgtttgacccaaatgtgttttaggcccaattgttgttgggggagggtggagg |
209 |
Q |
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| T |
1886711 |
aggttgagctagcggagtgttgcaaagctccctcaacccatgcccttgcgtttgacccaaatgtgttttagacccaattgttgttgggggagggtggagg |
1886612 |
T |
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| Q |
210 |
gtggaggggtgatagcatccaatggtacgattcatgggtattgttgtaatttgact--tagtactatatctactttgtaaaccctaattcatcaaaagaa |
307 |
Q |
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| T |
1886611 |
g-------gcgatagcatccagtggtacggttcatgggtattgttgtaatttgacccatagtactatatctactttgtaaaccctaattcatcaaaagaa |
1886519 |
T |
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| Q |
308 |
atgtatcaaactataattgctctattgtcgtagaggtggatacaattggttgaattacgtgaacaaagattgagtctaacaatgctccacaaatagcaat |
407 |
Q |
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| T |
1886518 |
atgtatcaaactataattgctctattgtcgtagaggtggacacaattggttgaattacgtgaacaaagattgagtctaacaatgctccacaaatagcaat |
1886419 |
T |
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| Q |
408 |
gtgggattttatgtttaaaatatgaacaaaatattccacaaatcctaccagtaaaatgtaccatagtgaaaa |
479 |
Q |
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| T |
1886418 |
gtgggattttatgtttaaaatatgaacaaaatattccacaaatcctaccagtaaaatgtaccatagtgaaaa |
1886347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 421 - 479
Target Start/End: Complemental strand, 1879817 - 1879759
Alignment:
| Q |
421 |
tttaaaatatgaacaaaatattccacaaatcctaccagtaaaatgtaccatagtgaaaa |
479 |
Q |
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| T |
1879817 |
tttaaaatatgatcaaaacattccataaatcctaccattaaaatgtaccaaagtgaaaa |
1879759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 23849649 - 23849719
Alignment:
| Q |
125 |
agtgttgcaaagctccctcaacccctgcccttgcgtttgacccaaatgtgttttaggcccaattgttgttg |
195 |
Q |
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| T |
23849649 |
agtgttgcgaagcaccctccacccccgcccttgcttttgggccaaatgtgtgttaggcccaattgttgttg |
23849719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 63 - 195
Target Start/End: Complemental strand, 21399963 - 21399834
Alignment:
| Q |
63 |
agtatgactcgtataaagacacataagagggacaaggggcagagacaaagttgagctagcggagtgttgcaaagctccctcaacccctgcccttgcgttt |
162 |
Q |
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| T |
21399963 |
agtatggctcatatatagacacagaagaagggcaatgggcagtga---agctgagctagcagagtgttgcaaagctccctccaccactgttcttgcattt |
21399867 |
T |
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| Q |
163 |
gacccaaatgtgttttaggcccaattgttgttg |
195 |
Q |
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| T |
21399866 |
ggcccaaacgtgtgttaggccaaactgttgttg |
21399834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 199
Target Start/End: Complemental strand, 34251281 - 34251147
Alignment:
| Q |
63 |
agtatgactcgtataaagacacataagagggacaaggggcagagacaaagttgagctagcggagtgttgcaaagctccctcaacccctgccctt-gcgtt |
161 |
Q |
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| T |
34251281 |
agtatgactcatatatagacacaaaagaggg-caaggggcggagacggagctgagctagtggagcgttgtgaagcttccgctgtccctgccctttgcgtt |
34251183 |
T |
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| Q |
162 |
tgacccaaatgtgttttaggcccaattgttgttggggg |
199 |
Q |
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| T |
34251182 |
tggctcaaacgtgtt--aggcccaattgtagttggggg |
34251147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 13951061 - 13951109
Alignment:
| Q |
135 |
agctccctcaacccctgcccttgcgtttgacccaaatgtgttttaggcc |
183 |
Q |
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| T |
13951061 |
agctccctccgcccctacccttgcgtttgacccaaacgtgtgttaggcc |
13951109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 3201 - 3249
Alignment:
| Q |
135 |
agctccctcaacccctgcccttgcgtttgacccaaatgtgttttaggcc |
183 |
Q |
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| T |
3201 |
agctccctccgcccctacccttgcgtttgacccaaacgtgtgttaggcc |
3249 |
T |
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