View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20721_low_14 (Length: 477)

Name: NF20721_low_14
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20721_low_14
NF20721_low_14
[»] chr3 (3 HSPs)
chr3 (16-434)||(6751725-6752144)
chr3 (19-314)||(6466502-6466798)
chr3 (137-174)||(13501824-13501861)
[»] chr8 (3 HSPs)
chr8 (18-434)||(6956450-6956867)
chr8 (137-174)||(13524666-13524703)
chr8 (137-174)||(13614201-13614238)
[»] chr7 (4 HSPs)
chr7 (16-304)||(22009881-22010170)
chr7 (344-428)||(22010176-22010260)
chr7 (137-174)||(21503517-21503554)
chr7 (137-173)||(5085079-5085115)
[»] chr2 (1 HSPs)
chr2 (16-402)||(21272731-21273118)
[»] scaffold0006 (1 HSPs)
scaffold0006 (137-174)||(204702-204739)


Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 16 - 434
Target Start/End: Original strand, 6751725 - 6752144
Alignment:
Q  16 caagaagtgccatattgaacatatataaattcttaaaacccataccaccgcttcttttatggacacataacttgtcccatgaaagctacctgattccctt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||    
T  6751725 caagaagtgccatattgaacatatataaattcttaaaacccataccaccgcttcttttatggacatataacttgtaccatgaaagccacctgattccctt 6751824  T
Q  116 atttctatttccaccatttctccaccaaaaagaattcatcattttctcgatttcatcaccaagagatgagggaatcggaaaa-tactcataaaataggta 214  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  6751825 atttctatttccaccatttccccaccaaaaagaattcatcattttttcgatttcatcaccaagagatgagggaatcagaaaaatactcataaaataggta 6751924  T
Q  215 ggaatagattggagtacatatttaatcatcacctcttttcccgccttagataaagagcgtcctccccatgaattgatcttcctccatacttggtccttaa 314  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6751925 ggaatagattggagtgcagatttaatcatcacctcttttcccgccttagataaagagcgtcctccccatgaattgatcttcctccatacttggtccttaa 6752024  T
Q  315 tgaatttaaacatgtctttcttgctcctccctatcatggaaggaaggctgagatatttaccgatttcaattgcaatgttgacttgtaagatatttgatat 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6752025 tgaatttaaacatgtctttcttgctcctccctatcatggaaggaaggccgagatatttatcgatttcaattgcaatgttgacttgtaagatatttgatat 6752124  T
Q  415 gtccactttggcttctgcac 434  Q
    || |||||||||||||||||    
T  6752125 gttcactttggcttctgcac 6752144  T

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Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 6466798 - 6466502
Alignment:
Q  19 gaagtgccatattgaacatatataaattcttaaaacccataccaccgcttcttttatggacacataacttgtcccatgaaagctacctgattcccttatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  6466798 gaagtgccatattgaacatatataaattcttaaaacccataccacggcttcttttatggacatataacttgtcccatgaaagccacctgattcccttatt 6466699  T
Q  119 tctatttccaccatttctccaccaaaaagaattcatcattttctcgatttcatcaccaagagatgagggaatc-ggaaaatactcataaaataggtagga 217  Q
    ||||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||   |||||||| |||||||||||||||    
T  6466698 tctatttccaccattttcccaccaaaaataattcatgattttctcgatttcatcaccaagagatgagggaatcaaaaaaatacttataaaataggtagga 6466599  T
Q  218 atagattggagtacatatttaatcatcacctcttttcccgccttagataaagagcgtcctccccatgaattgatcttcctccatacttggtccttaa 314  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6466598 atagattggagtatatatttaatcatcacctcttttcccgccttagataaagagcgtcctccccatgaattgatcttccttcatacttggtccttaa 6466502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 13501861 - 13501824
Alignment:
Q  137 ccaccaaaaagaattcatcattttctcgatttcatcac 174  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  13501861 ccaccaaaaagaattcatcattttctcaatttcatcac 13501824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 434
Target Start/End: Original strand, 6956450 - 6956867
Alignment:
Q  18 agaagtgccatattgaacatatataaattcttaaaacccataccaccgcttcttttatggacacataacttgtcccatgaaagctacctgattcccttat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||| || |||||||||||| ||||||||| |||||    
T  6956450 agaagtgccatattgaacatatataaattcttaaaacccataccaccatttcttttatggacatataatttatcccatgaaagccacctgattctcttat 6956549  T
Q  118 ttctatttccaccatttctccaccaaaaagaattcatcattttctcgatttcatcaccaagagatgagggaatcggaaaa-tactcataaaataggtagg 216  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||| |||||||||||    
T  6956550 ttctattttcaccatttccccaccaaaaagaattcatcattttctcgatttcatcaccaagagatgagggaattagaaaaatactcatgaaataggtagg 6956649  T
Q  217 aatagattggagtacatatttaatcatcacctcttttcccgccttagataaagagcgtcctccccatgaattgatcttcctccatacttggtccttaatg 316  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||| | | |||||||||    
T  6956650 aatagattggagtacagatttaatcatcacctcttttcccgccgtagataaagagcgtcatccccatgacttgatcttcctccatattcgatccttaatg 6956749  T
Q  317 aatttaaacatgtctttcttgctcctccctatcatggaaggaaggctgagatatttaccgatttcaattgcaatgttgacttgtaagatatttgatatgt 416  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||  ||||||||||||| || |||||||||||||||||||||||||||| |||||||    
T  6956750 aatttaaacaagtctttcttgctcctccctgtcatggaaggaaggtcgagatatttaccggttccaattgcaatgttgacttgtaagatattcgatatgt 6956849  T
Q  417 ccactttggcttctgcac 434  Q
     |||||||||||||||||    
T  6956850 tcactttggcttctgcac 6956867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 13524666 - 13524703
Alignment:
Q  137 ccaccaaaaagaattcatcattttctcgatttcatcac 174  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  13524666 ccacaaaaaagaattcatcattttctcaatttcatcac 13524703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 13614201 - 13614238
Alignment:
Q  137 ccaccaaaaagaattcatcattttctcgatttcatcac 174  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  13614201 ccacaaaaaagaattcatcattttctcaatttcatcac 13614238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 22009881 - 22010170
Alignment:
Q  16 caagaagtgccatattgaacatatataaattcttaaaacccataccaccgcttcttttatggacacataacttgtcccatgaaagctacctgattccctt 115  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||| |||| ||||||||||||||| |||||||||||||    
T  22009881 caagaagtgccatattgaacaaatataaattcttaaaacccataccaccatttcttttatggacaaataatttgtcccatgaaagccacctgattccctt 22009980  T
Q  116 atttctatttccaccatttctccaccaaaaagaattcatcattttctcgatttcatcaccaagagatgagggaa-tcggaaaatactcataaaataggta 214  Q
    |||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| | | |||||||| ||||| ||||||    
T  22009981 atttctatttccaccatttccctaccataaagaattcatcattttctcgatttcatcaccaagagatgagggaattagaaaaatacttataaagtaggta 22010080  T
Q  215 ggaatagattggagtacatatttaatcatcacctcttttcccgccttagataaagagcgtcctccccatgaattgatcttcctccatact 304  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||  || ||||||||||||||||||    
T  22010081 ggaatagattggagtacagatttaatcatcaccacttttcccgccttagataaagagcgccctcccctagagttgatcttcctccatact 22010170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 344 - 428
Target Start/End: Original strand, 22010176 - 22010260
Alignment:
Q  344 cctatcatggaaggaaggctgagatatttaccgatttcaattgcaatgttgacttgtaagatatttgatatgtccactttggctt 428  Q
    ||||||| |||||||||||  || ||||||||| ||  |||||||||||||||||||||||||||  ||||||  ||||||||||    
T  22010176 cctatcacggaaggaaggccaaggtatttaccggttcaaattgcaatgttgacttgtaagatattcaatatgtttactttggctt 22010260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 21503554 - 21503517
Alignment:
Q  137 ccaccaaaaagaattcatcattttctcgatttcatcac 174  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  21503554 ccaccaaaaagaattcatcattttctcaatttcatcac 21503517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 5085115 - 5085079
Alignment:
Q  137 ccaccaaaaagaattcatcattttctcgatttcatca 173  Q
    |||||||||||| |||||||| |||||||||||||||    
T  5085115 ccaccaaaaagagttcatcatcttctcgatttcatca 5085079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 7e-90; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 16 - 402
Target Start/End: Original strand, 21272731 - 21273118
Alignment:
Q  16 caagaagtgccatattgaacatatataaattcttaaaacccataccaccgcttcttttatggacacataacttgtcccatgaaagctacctgattccctt 115  Q
    ||||||||||||||||||||||||||||||||||  ||| |||||| ||   ||||||||||||  |||  || ||||| || ||| || ||||||||||    
T  21272731 caagaagtgccatattgaacatatataaattcttctaactcatacctccatctcttttatggacggatagtttatcccacgatagccacttgattccctt 21272830  T
Q  116 atttctatttccaccatttctccaccaaaaagaattcatcattttctcgatttcatcaccaagagatgagggaatcggaaaa-tactcataaaataggta 214  Q
     || |||||||||||||||  |||||||||||||||||| |||||||| ||||| || |||| |||||| |||||  ||||| ||||||| || ||||||    
T  21272831 gttcctatttccaccattttcccaccaaaaagaattcatgattttctcaatttcgtctccaatagatgatggaattagaaaaatactcatgaagtaggta 21272930  T
Q  215 ggaatagattggagtacatatttaatcatcacctcttttcccgccttagataaagagcgtcctccccatgaattgatcttcctccatacttggtccttaa 314  Q
    ||||||||||| || ||| |||||||||||| || ||||||| ||||||||||||||||||||||||| || || ||||||||||| |||  ||||||||    
T  21272931 ggaatagattgaagcacagatttaatcatcaacttttttcccaccttagataaagagcgtcctccccacgagttaatcttcctccacactcagtccttaa 21273030  T
Q  315 tgaatttaaacatgtctttcttgctcctccctatcatggaaggaaggctgagatatttaccgatttcaattgcaatgttgacttgtaa 402  Q
    || ||||||||||||| |||||| ||||||||||||||||||||| ||  ||||||||| || || | ||||||||||||| ||||||    
T  21273031 tgtatttaaacatgtccttcttgttcctccctatcatggaaggaaagccaagatatttatcggttcctattgcaatgttgatttgtaa 21273118  T

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Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 204702 - 204739
Alignment:
Q  137 ccaccaaaaagaattcatcattttctcgatttcatcac 174  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  204702 ccaccaaaaagaattcatcattttctcaatttcatcac 204739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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