View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20721_low_15 (Length: 464)
Name: NF20721_low_15
Description: NF20721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20721_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 4 - 464
Target Start/End: Complemental strand, 43540690 - 43540245
Alignment:
| Q |
4 |
tagaattatacatgctatgctatgatattaatttaaagaaagccataattaacttgacttgcctgaaaagcaaatacactgatgaaagaagttgcatttt |
103 |
Q |
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| T |
43540690 |
tagaattatacctgctatgctatgatattaatttaaagaaagccataattaacttgacttgcctgaaaagcaaatacactgatgaaagaagttgcatttt |
43540591 |
T |
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| Q |
104 |
gagtgatatttactttgtgattggcattcatccataaaagcatcaatctcatacacaaacaattcaccattgtaaatcaatgtaacatcacatgtctttg |
203 |
Q |
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| T |
43540590 |
gagtgatatttactttgtgattggcattcatccataaaagcatcaatctcatacacaaacaattcaccattgtaaatcaatgtaacatcacatgtctttg |
43540491 |
T |
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| Q |
204 |
gtgcatttttcttcacaaactctccttcccttaatttatcattgcgcctgttaattcatatacataatttaacatcattaattagttaaagaagataaat |
303 |
Q |
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| T |
43540490 |
gtgcatttttcttcacaaactctccttcccttaatttatcattgcgcctgttaattcatatacataatttaacatcattaattagttaaagaagataaat |
43540391 |
T |
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| Q |
304 |
attccttaaccatgcatgttactgacacaatagtcactaattgatttgtagtgtcatatattgtataccgtagatttttgactccaactccacggttggt |
403 |
Q |
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| T |
43540390 |
attccttaaccatgcatgttagtgacaatattgtcactaattga---------------gttgtataccgtagctttttgactcccaatacaaggttggt |
43540306 |
T |
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| Q |
404 |
tatgtttagaatagagatgcaatccagacttgatttttctttgtccttactctctagaatc |
464 |
Q |
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| T |
43540305 |
tatgttaagaatagagatgagatccagaatggcttttcctttgtccttgctctctagaatc |
43540245 |
T |
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